Rmu_sc0006234.1_g000001

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006234.1
OG0017055
Physical Location & Seq
Forward (+)
12 .. 650
639 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 639 bp
atgagttggatcgagtcgattgtattcttctccggcctaggtaatggaagtgccatctccgacttgagaagccggtacttaaaagagaaaggttttttcaaagcgaaatcagactatgtccggaccgcaatttcttacacgggcataatggctgcagtggaaatacttgaggaggagccaaaagggtacgtcatcttagacccttacggtggtattatgcatcgtataagcagtgaatccattgcttttccccacagaaagggtaatctctttacaattcagtacctggtggagtggaaggaagaagaaaattacaaaagaaatgagtacataggttggataagaagattatataattcaatgacacaatatgtgtcatggggtccaaggactgcttatattaactacattgaccttgacctcggagtgatgcgtttggttgacactagagttccaacgaaggataagggtgctgtggagattgccagggtttggggtgagaagtacttcttgaacaactatgacagattggtgagagcgaaaacaattattgatccaagtaacatttttagtaatcaacaagggattcctccactgtcgtatctgagtcagcctagtagtaccgctgagagtatgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
BBE FAD_binding_4

Protein Analysis

212

Amino Acids

24.43

Weight (kDa)

8.6

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BBE PF08031 132 - 197 2.8e-17 Berberine and berberine like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017055)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G44380 AT5G44380
fragaria_vesca FvH4_2g00110
malus_domestica MD00G1103700.v1.1
prunus_persica Prupe.4G257400_v2.0.a1
pyrus_communis pycom10g00010
rosa_chinensis RchiOBHm_Chr6g0249371
rosa_laevigata RLG00000015586
rosa_multiflora Rmu_co8327045.1_g000001 Rmu_sc0006234.1_g000001
rosa_roxburghii Rroxscaffold_7G00217810
rosa_rugosa Rorug05G0491200
rosa_wichuraiana Rw6G000210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 492
AccIII TCCGGA 1 cut(s) 120
AciI CCGC 2 cut(s) 126, 624
AclWI GGATC 2 cut(s) 17, 548
AfaI GTAC 6 cut(s) 77, 188, 284, 329, 506, 622
AfiI CCNNNNNNNGG 3 cut(s) 209, 259, 492
AgsI TTSAA 3 cut(s) 100, 360, 514
AjnI CCWGG 2 cut(s) 285, 485
AlwI GGATC 2 cut(s) 17, 548
AlwNI CAGNNNCTG 1 cut(s) 286
Aor13HI TCCGGA 1 cut(s) 120
AoxI GGCC 1 cut(s) 34
ApeKI GCWGC 1 cut(s) 152
Asp700I GAANNNNTTC 1 cut(s) 506
AspA2I CCTAGG 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 123, 383
AsuHPI GGTGA 2 cut(s) 509, 544
AvaII GGWCC 2 cut(s) 123, 383
AvrII CCTAGG 1 cut(s) 37
BaeI ACNNNNGTAYC 2 cut(s) 584, 617
BbvI GCAGC 1 cut(s) 139
BccI CCATC 1 cut(s) 62
BciT130I CCWGG 2 cut(s) 287, 487
BfaI CTAG 3 cut(s) 38, 447, 615
BfmI CTRYAG 1 cut(s) 153
BisI GCNGC 1 cut(s) 153
BlnI CCTAGG 1 cut(s) 37
BlsI GCNGC 1 cut(s) 154
BmcAI AGTACT 1 cut(s) 506
Bme1390I CCNGG 2 cut(s) 287, 487
Bme18I GGWCC 2 cut(s) 123, 383
BmgT120I GGNCC 2 cut(s) 123, 383
BmiI GGNNCC 2 cut(s) 177, 384
BmrFI CCNGG 2 cut(s) 287, 487
BmsI GCATC 2 cut(s) 229, 420
BpuEI CTTGAG 2 cut(s) 85, 188
BsaJI CCNNGG 4 cut(s) 37, 386, 421, 486
BsaWI WCCGGW 1 cut(s) 120
Bsc4I CCNNNNNNNGG 3 cut(s) 209, 259, 492
Bse118I RCCGGY 1 cut(s) 72
Bse3DI GCAATG 1 cut(s) 240
BseAI TCCGGA 1 cut(s) 120
BseBI CCWGG 2 cut(s) 287, 487
BseDI CCNNGG 4 cut(s) 37, 386, 421, 486
BseLI CCNNNNNNNGG 3 cut(s) 209, 259, 492
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 2 cut(s) 596, 618
BseRI GAGGAG 2 cut(s) 185, 188
BseXI GCAGC 1 cut(s) 139
BshFI GGCC 1 cut(s) 36
BsiSI CCGG 3 cut(s) 33, 73, 121
BslI CCNNNNNNNGG 3 cut(s) 209, 259, 492
BsnI GGCC 1 cut(s) 36
Bsp13I TCCGGA 1 cut(s) 120
Bsp143I GATC 2 cut(s) 9, 553
BspACI CCGC 2 cut(s) 126, 624
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 2 cut(s) 597, 619
BspEI TCCGGA 1 cut(s) 120
BspLI GGNNCC 2 cut(s) 177, 384
BspMAI CTGCAG 1 cut(s) 157
BspPI GGATC 2 cut(s) 17, 548
BsrDI GCAATG 1 cut(s) 240
BsrFI RCCGGY 1 cut(s) 72
BssAI RCCGGY 1 cut(s) 72
BssECI CCNNGG 4 cut(s) 37, 386, 421, 486
BssMI GATC 2 cut(s) 9, 553
BssT1I CCWWGG 2 cut(s) 37, 386
Bst2UI CCWGG 2 cut(s) 287, 487
Bst4CI ACNGT 2 cut(s) 209, 597
BstDEI CTNAG 3 cut(s) 196, 605, 627
BstKTI GATC 2 cut(s) 12, 556
BstMBI GATC 2 cut(s) 9, 553
BstNI CCWGG 2 cut(s) 287, 487
BstSCI CCNGG 2 cut(s) 285, 485
BstSFI CTRYAG 1 cut(s) 153
BstV1I GCAGC 1 cut(s) 139
BsuRI GGCC 1 cut(s) 36
BtsI GCAGTG 2 cut(s) 162, 238
BtsIMutI CAGTG 3 cut(s) 162, 238, 593
CaiI CAGNNNCTG 1 cut(s) 286
Cfr10I RCCGGY 1 cut(s) 72
Cfr13I GGNCC 2 cut(s) 123, 383
CpoI CGGWCCG 1 cut(s) 123
CsiI ACCWGGT 1 cut(s) 285
Csp6I GTAC 6 cut(s) 76, 187, 283, 328, 505, 621
CspI CGGWCCG 1 cut(s) 123
CviAII CATG 1 cut(s) 378
CviJI RGCY 5 cut(s) 36, 72, 152, 178, 613
CviKI_1 RGCY 5 cut(s) 36, 72, 152, 178, 613
CviQI GTAC 6 cut(s) 76, 187, 283, 328, 505, 621
DdeI CTNAG 3 cut(s) 196, 605, 627
DpnI GATC 2 cut(s) 11, 555
DpnII GATC 2 cut(s) 9, 553
Eco130I CCWWGG 2 cut(s) 37, 386
Eco47I GGWCC 2 cut(s) 123, 383
EcoRII CCWGG 2 cut(s) 285, 485
EcoT14I CCWWGG 2 cut(s) 37, 386
EcoT22I ATGCAT 1 cut(s) 222
ErhI CCWWGG 2 cut(s) 37, 386
FaeI CATG 1 cut(s) 381
FalI AAGNNNNNCTT 4 cut(s) 379, 411, 494, 526
FatI CATG 1 cut(s) 377
Fnu4HI GCNGC 1 cut(s) 153
Fsp4HI GCNGC 1 cut(s) 153
FspBI CTAG 3 cut(s) 38, 447, 615
GluI GCNGC 1 cut(s) 153
HaeIII GGCC 1 cut(s) 36
HapII CCGG 3 cut(s) 33, 73, 121
Hin1II CATG 1 cut(s) 381
HincII GTYRAC 1 cut(s) 442
HindII GTYRAC 1 cut(s) 442
HinfI GANTC 4 cut(s) 14, 236, 586, 607
HpaII CCGG 3 cut(s) 33, 73, 121
HphI GGTGA 2 cut(s) 509, 544
Hpy166II GTNNAC 1 cut(s) 442
Hpy188I TCNGA 4 cut(s) 61, 112, 425, 606
Hpy188III TCNNGA 2 cut(s) 121, 511
Hpy8I GTNNAC 1 cut(s) 442
HpyAV CCTTC 2 cut(s) 292, 454
HpyCH4III ACNGT 2 cut(s) 209, 597
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 2 cut(s) 155, 220
HpyF3I CTNAG 3 cut(s) 196, 605, 627
HpySE526I ACGT 1 cut(s) 189
Hsp92II CATG 1 cut(s) 381
Kpn2I TCCGGA 1 cut(s) 120
Kzo9I GATC 2 cut(s) 9, 553
LmnI GCTCC 1 cut(s) 175
LpnPI CCDG 7 cut(s) 46, 86, 134, 272, 299, 472, 499
Lsp1109I GCAGC 1 cut(s) 139
LweI GCATC 2 cut(s) 229, 420
MabI ACCWGGT 1 cut(s) 285
MaeI CTAG 3 cut(s) 38, 447, 615
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 560
MalI GATC 2 cut(s) 11, 555
MboI GATC 2 cut(s) 9, 553
MboII GAAGA 4 cut(s) 19, 314, 317, 357
MluCI AATT 5 cut(s) 129, 276, 310, 355, 546
MlyI GAGTC 2 cut(s) 23, 616
MmeI TCCRAC 3 cut(s) 84, 317, 479
MnlI CCTC 4 cut(s) 163, 166, 431, 600
Mph1103I ATGCAT 1 cut(s) 222
MroI TCCGGA 1 cut(s) 120
MroXI GAANNNNTTC 1 cut(s) 506
MseI TTAA 2 cut(s) 80, 402
MspA1I CMGCKG 1 cut(s) 626
MspI CCGG 3 cut(s) 33, 73, 121
MspR9I CCNGG 2 cut(s) 287, 487
MvaI CCWGG 2 cut(s) 287, 487
NdeII GATC 2 cut(s) 9, 553
NlaIII CATG 1 cut(s) 381
NlaIV GGNNCC 2 cut(s) 177, 384
NsiI ATGCAT 1 cut(s) 222
PdmI GAANNNNTTC 1 cut(s) 506
PfeI GAWTC 2 cut(s) 236, 586
PflFI GACNNNGTC 1 cut(s) 116
PflMI CCANNNNNTGG 1 cut(s) 492
PkrI GCNGC 1 cut(s) 154
PleI GAGTC 2 cut(s) 22, 615
PpsI GAGTC 2 cut(s) 22, 615
Psp6I CCWGG 2 cut(s) 285, 485
PspGI CCWGG 2 cut(s) 285, 485
PspN4I GGNNCC 2 cut(s) 177, 384
PspPI GGNCC 2 cut(s) 123, 383
PstI CTGCAG 1 cut(s) 157
PstNI CAGNNNCTG 1 cut(s) 286
PsyI GACNNNGTC 1 cut(s) 116
RsaI GTAC 6 cut(s) 77, 188, 284, 329, 506, 622
RsaNI GTAC 6 cut(s) 76, 187, 283, 328, 505, 621
Rsr2I CGGWCCG 1 cut(s) 123
RsrII CGGWCCG 1 cut(s) 123
SaqAI TTAA 2 cut(s) 80, 402
SatI GCNGC 1 cut(s) 153
Sau3AI GATC 2 cut(s) 9, 553
Sau96I GGNCC 2 cut(s) 123, 383
ScaI AGTACT 1 cut(s) 506
SchI GAGTC 2 cut(s) 23, 616
ScrFI CCNGG 2 cut(s) 287, 487
SetI ASST 7 cut(s) 43, 94, 192, 288, 337, 417, 423
SexAI ACCWGGT 1 cut(s) 285
SfaNI GCATC 2 cut(s) 229, 420
SfcI CTRYAG 1 cut(s) 153
SinI GGWCC 2 cut(s) 123, 383
SmlI CTYRAG 2 cut(s) 64, 167
SmoI CTYRAG 2 cut(s) 64, 167
Sse9I AATT 5 cut(s) 129, 276, 310, 355, 546
SsiI CCGC 2 cut(s) 126, 624
SspMI CTAG 3 cut(s) 38, 447, 615
StyD4I CCNGG 2 cut(s) 285, 485
StyI CCWWGG 2 cut(s) 37, 386
TaaI ACNGT 2 cut(s) 209, 597
TaiI ACGT 1 cut(s) 192
TaqI TCGA 2 cut(s) 12, 17
TasI AATT 5 cut(s) 129, 276, 310, 355, 546
TatI WGTACW 2 cut(s) 327, 504
TfiI GAWTC 2 cut(s) 236, 586
Tru1I TTAA 2 cut(s) 80, 402
Tru9I TTAA 2 cut(s) 80, 402
TscAI CASTG 3 cut(s) 162, 238, 600
TseI GCWGC 1 cut(s) 152
TspRI CASTG 3 cut(s) 162, 238, 600
Tth111I GACNNNGTC 1 cut(s) 116
Van91I CCANNNNNTGG 1 cut(s) 492
VpaK11BI GGWCC 2 cut(s) 123, 383
XmaJI CCTAGG 1 cut(s) 37
XmnI GAANNNNTTC 1 cut(s) 506
XspI CTAG 3 cut(s) 38, 447, 615
ZrmI AGTACT 1 cut(s) 506
Zsp2I ATGCAT 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.