Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006264.1

Orthogroup ID

OG0025606

Physical Location & Seq

Genomic Coordinates Reverse (-)

77068 .. 77397

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006264.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgtcgtgcatccacccaccaaaaaagccagaggcgagcagtccatccttctctccgtcggcctcagcagttaaggctttaagagcaccgttgagcaagtcaccaatagctgccccgatctgcgctccatcacggccatcatcacaggtgtggaggatcggagccgagacggcgcaagtgttagccaagcgctgcgccgaactagtcctccctgctcggagcctcaaagccgccgaagacgccaaggcgcgagttcgctctgtttggcgatccggatcgcgaacgccccgcgattgggttcgtccgatccggaacgcggttcgccggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

109

Amino Acids

11.79

Weight (kDa)

11.63

Isoelectric Point (pI)

81.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025606)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006264.1_g000021
rosa_roxburghii	Rroxscaffold_5G00342480
rosa_samantha	Rh5AG412700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	4 cut(s)	250, 280, 291, 317
AccIII	TCCGGA	2 cut(s)	272, 309
AciI	CCGC	3 cut(s)	231, 289, 317
AclWI	GGATC	4 cut(s)	164, 264, 283, 301
AcoI	YGGCCR	1 cut(s)	134
AcyI	GRCGYC	1 cut(s)	240
AfeI	AGCGCT	1 cut(s)	191
AfiI	CCNNNNNNNGG	3 cut(s)	294, 295, 316
AhlI	ACTAGT	1 cut(s)	202
AleI	CACNNNNGTG	1 cut(s)	148
AloI	GAACNNNNNNTCC	2 cut(s)	192, 224
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	4 cut(s)	164, 264, 283, 301
Aor13HI	TCCGGA	2 cut(s)	272, 309
Aor51HI	AGCGCT	1 cut(s)	191
AoxI	GGCC	2 cut(s)	60, 134
ApeKI	GCWGC	2 cut(s)	110, 192
AspLEI	GCGC	5 cut(s)	125, 175, 192, 197, 250
AsuHPI	GGTGA	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	88
BbvCI	CCTCAGC	1 cut(s)	64
BbvI	GCAGC	2 cut(s)	97, 179
BccI	CCATC	3 cut(s)	52, 136, 145
BceAI	ACGGC	2 cut(s)	149, 186
BcoDI	GTCTC	1 cut(s)	161
BcuI	ACTAGT	1 cut(s)	202
BfaI	CTAG	1 cut(s)	203
BfoI	RGCGCY	1 cut(s)	193
BglI	GCCNNNNNGGC	1 cut(s)	170
BisI	GCNGC	3 cut(s)	111, 193, 231
BlsI	GCNGC	3 cut(s)	112, 194, 232
BmiI	GGNNCC	2 cut(s)	163, 221
BmsI	GCATC	1 cut(s)	18
BpiI	GAAGAC	1 cut(s)	243
Bpu10I	CCTNAGC	1 cut(s)	64
BsaBI	GATNNNNATC	1 cut(s)	274
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	243
BsaWI	WCCGGW	2 cut(s)	272, 309
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
Bsc4I	CCNNNNNNNGG	3 cut(s)	294, 295, 316
Bse118I	RCCGGY	1 cut(s)	324
Bse8I	GATNNNNATC	1 cut(s)	274
BseAI	TCCGGA	2 cut(s)	272, 309
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	2 cut(s)	9, 44
BseJI	GATNNNNATC	1 cut(s)	274
BseLI	CCNNNNNNNGG	3 cut(s)	294, 295, 316
BseMII	CTCAG	1 cut(s)	78
BseXI	GCAGC	2 cut(s)	97, 179
Bsh1236I	CGCG	4 cut(s)	250, 280, 291, 317
BshFI	GGCC	2 cut(s)	62, 136
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	3 cut(s)	273, 310, 325
BslI	CCNNNNNNNGG	3 cut(s)	294, 295, 316
BsmAI	GTCTC	1 cut(s)	161
BsmBI	CGTCTC	1 cut(s)	161
BsnI	GGCC	2 cut(s)	62, 136
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp13I	TCCGGA	2 cut(s)	272, 309
Bsp143I	GATC	5 cut(s)	117, 156, 269, 275, 306
Bsp68I	TCGCGA	1 cut(s)	280
BspACI	CCGC	3 cut(s)	231, 289, 317
BspANI	GGCC	2 cut(s)	62, 136
BspCNI	CTCAG	1 cut(s)	77
BspEI	TCCGGA	2 cut(s)	272, 309
BspFNI	CGCG	4 cut(s)	250, 280, 291, 317
BspLI	GGNNCC	2 cut(s)	163, 221
BspPI	GGATC	4 cut(s)	164, 264, 283, 301
BsrFI	RCCGGY	1 cut(s)	324
BssAI	RCCGGY	1 cut(s)	324
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	5 cut(s)	117, 156, 269, 275, 306
BssNI	GRCGYC	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	37
BstDEI	CTNAG	1 cut(s)	64
BstF5I	GGATG	2 cut(s)	9, 44
BstFNI	CGCG	4 cut(s)	250, 280, 291, 317
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	5 cut(s)	125, 175, 192, 197, 250
BstKTI	GATC	5 cut(s)	120, 159, 272, 278, 309
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	5 cut(s)	117, 156, 269, 275, 306
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 83, 170, 239
BstUI	CGCG	4 cut(s)	250, 280, 291, 317
BstV1I	GCAGC	2 cut(s)	97, 179
BstV2I	GAAGAC	1 cut(s)	243
BsuRI	GGCC	2 cut(s)	62, 136
BtsCI	GGATG	2 cut(s)	9, 44
BtuMI	TCGCGA	1 cut(s)	280
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	5 cut(s)	125, 175, 192, 197, 250
Cfr10I	RCCGGY	1 cut(s)	324
CseI	GACGC	1 cut(s)	248
CviJI	RGCY	9 cut(s)	28, 62, 77, 110, 136, 164, 185, 222, 230
CviKI_1	RGCY	9 cut(s)	28, 62, 77, 110, 136, 164, 185, 222, 230
DdeI	CTNAG	1 cut(s)	64
DpnI	GATC	5 cut(s)	119, 158, 271, 277, 308
DpnII	GATC	5 cut(s)	117, 156, 269, 275, 306
EaeI	YGGCCR	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	243
Eco47III	AGCGCT	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	161
FauI	CCCGC	1 cut(s)	296
Fnu4HI	GCNGC	3 cut(s)	111, 193, 231
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	3 cut(s)	111, 193, 231
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	5 cut(s)	124, 174, 191, 196, 249
GluI	GCNGC	3 cut(s)	111, 193, 231
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	2 cut(s)	62, 136
HapII	CCGG	3 cut(s)	273, 310, 325
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	5 cut(s)	125, 175, 192, 197, 250
Hin1I	GRCGYC	1 cut(s)	240
Hin6I	GCGC	5 cut(s)	123, 173, 190, 195, 248
HinP1I	GCGC	5 cut(s)	123, 173, 190, 195, 248
HpaII	CCGG	3 cut(s)	273, 310, 325
HphI	GGTGA	1 cut(s)	93
Hpy188I	TCNGA	3 cut(s)	161, 219, 306
Hpy188III	TCNNGA	3 cut(s)	273, 279, 310
Hpy99I	CGWCG	1 cut(s)	61
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4V	TGCA	1 cut(s)	9
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 83, 170, 239
HpyF3I	CTNAG	1 cut(s)	64
Hsp92I	GRCGYC	1 cut(s)	240
HspAI	GCGC	5 cut(s)	123, 173, 190, 195, 248
Kpn2I	TCCGGA	2 cut(s)	272, 309
Kzo9I	GATC	5 cut(s)	117, 156, 269, 275, 306
LmnI	GCTCC	3 cut(s)	130, 161, 219
LpnPI	CCDG	5 cut(s)	42, 131, 225, 286, 323
Lsp1109I	GCAGC	2 cut(s)	97, 179
LweI	GCATC	1 cut(s)	18
MaeI	CTAG	1 cut(s)	203
MaeIII	GTNAC	1 cut(s)	99
MalI	GATC	5 cut(s)	119, 158, 271, 277, 308
MboI	GATC	5 cut(s)	117, 156, 269, 275, 306
MboII	GAAGA	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	88
MnlI	CCTC	5 cut(s)	25, 73, 147, 218, 233
MroI	TCCGGA	2 cut(s)	272, 309
MseI	TTAA	2 cut(s)	72, 80
MslI	CAYNNNNRTG	1 cut(s)	148
MspI	CCGG	3 cut(s)	273, 310, 325
MteI	GCGCNGCGC	1 cut(s)	193
MvnI	CGCG	4 cut(s)	250, 280, 291, 317
MwoI	GCNNNNNNNGC	4 cut(s)	74, 83, 170, 239
NdeII	GATC	5 cut(s)	117, 156, 269, 275, 306
NlaIV	GGNNCC	2 cut(s)	163, 221
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	99
NruI	TCGCGA	1 cut(s)	280
OliI	CACNNNNGTG	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	112, 194, 232
PspN4I	GGNNCC	2 cut(s)	163, 221
RruI	TCGCGA	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	148
SaqAI	TTAA	2 cut(s)	72, 80
SatI	GCNGC	3 cut(s)	111, 193, 231
Sau3AI	GATC	5 cut(s)	117, 156, 269, 275, 306
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	2 cut(s)	112, 150
SfaNI	GCATC	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	148
SpeI	ACTAGT	1 cut(s)	202
SsiI	CCGC	3 cut(s)	231, 289, 317
SspMI	CTAG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	90
TauI	GCSGC	1 cut(s)	233
Tru1I	TTAA	2 cut(s)	72, 80
Tru9I	TTAA	2 cut(s)	72, 80
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	2 cut(s)	110, 192
Tsp45I	GTSAC	1 cut(s)	99
TspGWI	ACGGA	1 cut(s)	45
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.