Rroxscaffold_5G00342480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0025606
Physical Location & Seq
Reverse (-)
11444647 .. 11445523
877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00342480.1

Sequence Viewer

Length: 393 bp
ATGTTGCGGTACGGATATGCGATACGGGTACGCGGAACTGTCGCCGCCGCCGCCGCCGCAGATCTAGAGGAAGCCGAGGCGAACAGTCCTTCCTTATCTCCGTCGACCCCGGCGGTTATGGCTCCAAGAGCACCGCAGAGCAAGTCACCGACAGCTGCCCCGATATCCGCTCCATCACGGCCATCATCACGGTGCTACGTCGGGGATTGGAGCCGTGACGGTGCGAGTATTAGCCAAGCGCGGCACCAAACTGGTCCTCCCTGCTCGGAGCCTCAAAGCCACCGAGGACGCAAGGCGCGAGTTCGCTATGTTTGGCGACCCGCATTGCGAATGCCCCGCGATTGGATTCGTGAGATCCGGAACATTGTCGCTGCGGTGCAGCGTTTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

130

Amino Acids

14.28

Weight (kDa)

11.32

Isoelectric Point (pI)

68.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025606)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0006264.1_g000021
rosa_roxburghii Rroxscaffold_5G00342480
rosa_samantha Rh5AG412700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 243
AccBSI CCGCTC 1 cut(s) 170
AccI GTMKAC 1 cut(s) 104
AccII CGCG 4 cut(s) 33, 241, 298, 339
AccIII TCCGGA 1 cut(s) 357
AclWI GGATC 1 cut(s) 349
AcoI YGGCCR 1 cut(s) 179
AfaI GTAC 2 cut(s) 11, 30
AfiI CCNNNNNNNGG 1 cut(s) 342
AloI GAACNNNNNNTCC 2 cut(s) 74, 106
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
Alw21I GWGCWC 1 cut(s) 133
AlwI GGATC 1 cut(s) 349
Aor13HI TCCGGA 1 cut(s) 357
AoxI GGCC 1 cut(s) 179
ApeKI GCWGC 3 cut(s) 155, 371, 379
AspLEI GCGC 2 cut(s) 241, 298
AspS9I GGNCC 1 cut(s) 254
AsuC2I CCSGG 1 cut(s) 110
AsuHPI GGTGA 1 cut(s) 138
AvaII GGWCC 1 cut(s) 254
BanI GGYRCC 1 cut(s) 243
Bbv12I GWGCWC 1 cut(s) 133
BbvI GCAGC 2 cut(s) 142, 358
BccI CCATC 2 cut(s) 181, 190
BceAI ACGGC 2 cut(s) 194, 198
BcnI CCSGG 1 cut(s) 110
BfaI CTAG 1 cut(s) 65
BglII AGATCT 1 cut(s) 61
BisI GCNGC 9 cut(s) 45, 48, 51, 54, 57, 156, 242, 372, 380
BlsI GCNGC 9 cut(s) 46, 49, 52, 55, 58, 157, 243, 373, 381
Bme1390I CCNGG 1 cut(s) 110
Bme18I GGWCC 1 cut(s) 254
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 4 cut(s) 123, 212, 245, 270
BmrFI CCNGG 1 cut(s) 110
BpuMI CCSGG 1 cut(s) 110
BsaJI CCNNGG 3 cut(s) 75, 108, 283
BsaWI WCCGGW 2 cut(s) 357, 387
BsaXI ACNNNNNCTCC 2 cut(s) 241, 271
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse1I ACTGG 1 cut(s) 256
Bse3DI GCAATG 1 cut(s) 323
BseAI TCCGGA 1 cut(s) 357
BseDI CCNNGG 3 cut(s) 75, 108, 283
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMI GCAATG 1 cut(s) 323
BseNI ACTGG 1 cut(s) 256
BseXI GCAGC 2 cut(s) 142, 358
Bsh1236I CGCG 4 cut(s) 33, 241, 298, 339
BshFI GGCC 1 cut(s) 181
BshNI GGYRCC 1 cut(s) 243
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 3 cut(s) 110, 358, 388
BslI CCNNNNNNNGG 1 cut(s) 342
BsmI GAATGC 1 cut(s) 336
BsnI GGCC 1 cut(s) 181
Bsp1286I GDGCHC 1 cut(s) 133
Bsp13I TCCGGA 1 cut(s) 357
Bsp143I GATC 2 cut(s) 61, 354
BspANI GGCC 1 cut(s) 181
BspEI TCCGGA 1 cut(s) 357
BspFNI CGCG 4 cut(s) 33, 241, 298, 339
BspLI GGNNCC 4 cut(s) 123, 212, 245, 270
BspPI GGATC 1 cut(s) 349
BspT107I GGYRCC 1 cut(s) 243
BsrBI CCGCTC 1 cut(s) 170
BsrDI GCAATG 1 cut(s) 323
BsrI ACTGG 1 cut(s) 256
BssECI CCNNGG 3 cut(s) 75, 108, 283
BssMI GATC 2 cut(s) 61, 354
Bst4CI ACNGT 4 cut(s) 40, 86, 192, 221
BstFNI CGCG 4 cut(s) 33, 241, 298, 339
BstHHI GCGC 2 cut(s) 241, 298
BstKTI GATC 2 cut(s) 64, 357
BstMBI GATC 2 cut(s) 61, 354
BstMWI GCNNNNNNNGC 5 cut(s) 50, 53, 56, 119, 128
BstSCI CCNGG 1 cut(s) 108
BstUI CGCG 4 cut(s) 33, 241, 298, 339
BstV1I GCAGC 2 cut(s) 142, 358
BstX2I RGATCY 2 cut(s) 61, 354
BstYI RGATCY 2 cut(s) 61, 354
BsuRI GGCC 1 cut(s) 181
CfoI GCGC 2 cut(s) 241, 298
Cfr13I GGNCC 1 cut(s) 254
CseI GACGC 1 cut(s) 297
Csp6I GTAC 2 cut(s) 10, 29
CviJI RGCY 8 cut(s) 74, 122, 155, 181, 213, 234, 271, 279
CviKI_1 RGCY 8 cut(s) 74, 122, 155, 181, 213, 234, 271, 279
CviQI GTAC 2 cut(s) 10, 29
DpnI GATC 2 cut(s) 63, 356
DpnII GATC 2 cut(s) 61, 354
EaeI YGGCCR 1 cut(s) 179
Eco32I GATATC 1 cut(s) 165
Eco47I GGWCC 1 cut(s) 254
EcoRV GATATC 1 cut(s) 165
FaiI YATR 3 cut(s) 18, 119, 309
FauI CCCGC 2 cut(s) 328, 344
FblI GTMKAC 1 cut(s) 104
Fnu4HI GCNGC 9 cut(s) 45, 48, 51, 54, 57, 156, 242, 372, 380
Fsp4HI GCNGC 9 cut(s) 45, 48, 51, 54, 57, 156, 242, 372, 380
FspBI CTAG 1 cut(s) 65
GlaI GCGC 2 cut(s) 240, 297
GluI GCNGC 9 cut(s) 45, 48, 51, 54, 57, 156, 242, 372, 380
HaeIII GGCC 1 cut(s) 181
HapII CCGG 3 cut(s) 110, 358, 388
HgaI GACGC 1 cut(s) 297
HhaI GCGC 2 cut(s) 241, 298
Hin6I GCGC 2 cut(s) 239, 296
HinP1I GCGC 2 cut(s) 239, 296
HincII GTYRAC 1 cut(s) 105
HindII GTYRAC 1 cut(s) 105
HinfI GANTC 1 cut(s) 346
HpaII CCGG 3 cut(s) 110, 358, 388
HphI GGTGA 1 cut(s) 138
Hpy166II GTNNAC 1 cut(s) 105
Hpy188I TCNGA 1 cut(s) 268
Hpy188III TCNNGA 3 cut(s) 65, 350, 358
Hpy8I GTNNAC 1 cut(s) 105
Hpy99I CGWCG 2 cut(s) 106, 203
HpyAV CCTTC 1 cut(s) 99
HpyCH4III ACNGT 4 cut(s) 40, 86, 192, 221
HpyCH4IV ACGT 1 cut(s) 198
HpyCH4V TGCA 1 cut(s) 379
HpyF10VI GCNNNNNNNGC 5 cut(s) 50, 53, 56, 119, 128
HpySE526I ACGT 1 cut(s) 198
HspAI GCGC 2 cut(s) 239, 296
Kpn2I TCCGGA 1 cut(s) 357
Kzo9I GATC 2 cut(s) 61, 354
LmnI GCTCC 4 cut(s) 127, 175, 210, 268
LpnPI CCDG 4 cut(s) 123, 237, 274, 371
Lsp1109I GCAGC 2 cut(s) 142, 358
MaeI CTAG 1 cut(s) 65
MaeII ACGT 1 cut(s) 198
MaeIII GTNAC 2 cut(s) 144, 215
MalI GATC 2 cut(s) 63, 356
MbiI CCGCTC 1 cut(s) 170
MboI GATC 2 cut(s) 61, 354
MflI RGATCY 2 cut(s) 61, 354
MhlI GDGCHC 1 cut(s) 133
MnlI CCTC 5 cut(s) 61, 70, 267, 278, 282
MroI TCCGGA 1 cut(s) 357
MslI CAYNNNNRTG 1 cut(s) 190
MspA1I CMGCKG 1 cut(s) 155
MspI CCGG 3 cut(s) 110, 358, 388
MspR9I CCNGG 1 cut(s) 110
Mva1269I GAATGC 1 cut(s) 336
MvnI CGCG 4 cut(s) 33, 241, 298, 339
MwoI GCNNNNNNNGC 5 cut(s) 50, 53, 56, 119, 128
NciI CCSGG 1 cut(s) 110
NdeII GATC 2 cut(s) 61, 354
NlaIV GGNNCC 4 cut(s) 123, 212, 245, 270
NmeAIII GCCGAG 1 cut(s) 100
NmuCI GTSAC 2 cut(s) 144, 215
PcsI WCGNNNNNNNCGW 1 cut(s) 295
PctI GAATGC 1 cut(s) 336
PfeI GAWTC 1 cut(s) 346
PkrI GCNGC 9 cut(s) 46, 49, 52, 55, 58, 157, 243, 373, 381
PspN4I GGNNCC 4 cut(s) 123, 212, 245, 270
PspPI GGNCC 1 cut(s) 254
PsuI RGATCY 2 cut(s) 61, 354
PvuII CAGCTG 1 cut(s) 155
RsaI GTAC 2 cut(s) 11, 30
RsaNI GTAC 2 cut(s) 10, 29
RseI CAYNNNNRTG 1 cut(s) 190
SalI GTCGAC 1 cut(s) 103
SatI GCNGC 9 cut(s) 45, 48, 51, 54, 57, 156, 242, 372, 380
Sau3AI GATC 2 cut(s) 61, 354
Sau96I GGNCC 1 cut(s) 254
ScrFI CCNGG 1 cut(s) 110
SduI GDGCHC 1 cut(s) 133
SetI ASST 2 cut(s) 157, 201
SinI GGWCC 1 cut(s) 254
SmiMI CAYNNNNRTG 1 cut(s) 190
SspMI CTAG 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 108
TaaI ACNGT 4 cut(s) 40, 86, 192, 221
TaiI ACGT 1 cut(s) 201
TaqI TCGA 1 cut(s) 104
TauI GCSGC 6 cut(s) 47, 50, 53, 56, 59, 244
TfiI GAWTC 1 cut(s) 346
TseFI GTSAC 2 cut(s) 144, 215
TseI GCWGC 3 cut(s) 155, 371, 379
Tsp45I GTSAC 2 cut(s) 144, 215
TspGWI ACGGA 2 cut(s) 27, 90
VpaK11BI GGWCC 1 cut(s) 254
XbaI TCTAGA 1 cut(s) 64
XmiI GTMKAC 1 cut(s) 104
XspI CTAG 1 cut(s) 65
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.