Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0025606

Physical Location & Seq

Genomic Coordinates Forward (+)

71255879 .. 71257119

Gene Structure 1241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG412700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 264 bp

ATGTCGTGCATCCACCCACCAAAAAAGCCAGAGGCGAGCAGTCCATCCTTCTCTCCGTCAGCCCCAGCAGTTACGGCTTCAAGAGCACCGTTGAGCAAGTCACCAATAGCTGCCCCGATCTCCGCTCCATCACGGCCATCATCACAGGTGTGGAGGATCGGAGCCGAGACGGCGCAAGTGTTAGCCAAGCGCTGCGCCAAACTAGTCCTCCCTGCTCGGAGCCTCAAAGCCGCCGAAGACGCCAAGGCGCGATGCAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0016020 GO:0016491 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0042170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0055114 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

87

Amino Acids

9.03

Weight (kDa)

10.46

Isoelectric Point (pI)

81.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025606)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0006264.1_g000021
rosa_roxburghii	Rroxscaffold_5G00342480
rosa_samantha	Rh5AG412700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	125
AccII	CGCG	1 cut(s)	250
AciI	CCGC	2 cut(s)	123, 231
AclWI	GGATC	1 cut(s)	164
AcoI	YGGCCR	1 cut(s)	134
AcyI	GRCGYC	1 cut(s)	240
AfeI	AGCGCT	1 cut(s)	191
AgsI	TTSAA	1 cut(s)	81
AhlI	ACTAGT	1 cut(s)	202
AleI	CACNNNNGTG	1 cut(s)	148
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	161
AlwI	GGATC	1 cut(s)	164
Aor51HI	AGCGCT	1 cut(s)	191
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	2 cut(s)	110, 192
AspLEI	GCGC	4 cut(s)	175, 192, 197, 250
AsuHPI	GGTGA	1 cut(s)	93
BbsI	GAAGAC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	88
BbvI	GCAGC	2 cut(s)	97, 179
BccI	CCATC	3 cut(s)	52, 136, 145
BceAI	ACGGC	3 cut(s)	90, 149, 186
BcoDI	GTCTC	1 cut(s)	161
BcuI	ACTAGT	1 cut(s)	202
BfaI	CTAG	1 cut(s)	203
BfoI	RGCGCY	1 cut(s)	193
BglI	GCCNNNNNGGC	1 cut(s)	170
BisI	GCNGC	3 cut(s)	111, 193, 231
BlsI	GCNGC	3 cut(s)	112, 194, 232
BmiI	GGNNCC	2 cut(s)	163, 221
BmsI	GCATC	2 cut(s)	18, 242
BpiI	GAAGAC	1 cut(s)	243
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	243
BsaXI	ACNNNNNCTCC	2 cut(s)	192, 222
BseDI	CCNNGG	1 cut(s)	243
BseGI	GGATG	2 cut(s)	9, 44
BseXI	GCAGC	2 cut(s)	97, 179
BseYI	CCCAGC	1 cut(s)	64
Bsh1236I	CGCG	1 cut(s)	250
BshFI	GGCC	1 cut(s)	136
BsiHKAI	GWGCWC	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	161
BsmBI	CGTCTC	1 cut(s)	161
BsnI	GGCC	1 cut(s)	136
Bsp1286I	GDGCHC	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	117, 156
BspACI	CCGC	2 cut(s)	123, 231
BspANI	GGCC	1 cut(s)	136
BspFNI	CGCG	1 cut(s)	250
BspLI	GGNNCC	2 cut(s)	163, 221
BspPI	GGATC	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	125
BssECI	CCNNGG	1 cut(s)	243
BssMI	GATC	2 cut(s)	117, 156
BssNI	GRCGYC	1 cut(s)	240
BssT1I	CCWWGG	1 cut(s)	243
Bst4CI	ACNGT	1 cut(s)	90
BstACI	GRCGYC	1 cut(s)	240
BstC8I	GCNNGC	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	9, 44
BstFNI	CGCG	1 cut(s)	250
BstH2I	RGCGCY	1 cut(s)	193
BstHHI	GCGC	4 cut(s)	175, 192, 197, 250
BstKTI	GATC	2 cut(s)	120, 159
BstMAI	GTCTC	1 cut(s)	161
BstMBI	GATC	2 cut(s)	117, 156
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 83, 170, 239
BstUI	CGCG	1 cut(s)	250
BstV1I	GCAGC	2 cut(s)	97, 179
BstV2I	GAAGAC	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	136
BtsCI	GGATG	2 cut(s)	9, 44
Cac8I	GCNNGC	1 cut(s)	37
CfoI	GCGC	4 cut(s)	175, 192, 197, 250
CseI	GACGC	1 cut(s)	248
CviJI	RGCY	9 cut(s)	28, 62, 77, 110, 136, 164, 185, 222, 230
CviKI_1	RGCY	9 cut(s)	28, 62, 77, 110, 136, 164, 185, 222, 230
DpnI	GATC	2 cut(s)	119, 158
DpnII	GATC	2 cut(s)	117, 156
EaeI	YGGCCR	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	243
Eco47III	AGCGCT	1 cut(s)	191
EcoT14I	CCWWGG	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	243
Esp3I	CGTCTC	1 cut(s)	161
Fnu4HI	GCNGC	3 cut(s)	111, 193, 231
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	3 cut(s)	111, 193, 231
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	4 cut(s)	174, 191, 196, 249
GluI	GCNGC	3 cut(s)	111, 193, 231
GsaI	CCCAGC	1 cut(s)	68
HaeII	RGCGCY	1 cut(s)	193
HaeIII	GGCC	1 cut(s)	136
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	4 cut(s)	175, 192, 197, 250
Hin1I	GRCGYC	1 cut(s)	240
Hin6I	GCGC	4 cut(s)	173, 190, 195, 248
HinP1I	GCGC	4 cut(s)	173, 190, 195, 248
HphI	GGTGA	1 cut(s)	93
Hpy188I	TCNGA	2 cut(s)	161, 219
Hpy188III	TCNNGA	1 cut(s)	81
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	90
HpyCH4V	TGCA	2 cut(s)	9, 255
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 83, 170, 239
Hsp92I	GRCGYC	1 cut(s)	240
HspAI	GCGC	4 cut(s)	173, 190, 195, 248
Kzo9I	GATC	2 cut(s)	117, 156
LmnI	GCTCC	3 cut(s)	130, 161, 219
LpnPI	CCDG	4 cut(s)	42, 78, 131, 225
Lsp1109I	GCAGC	2 cut(s)	97, 179
LweI	GCATC	2 cut(s)	18, 242
MaeI	CTAG	1 cut(s)	203
MaeIII	GTNAC	2 cut(s)	70, 99
MalI	GATC	2 cut(s)	119, 158
MbiI	CCGCTC	1 cut(s)	125
MboI	GATC	2 cut(s)	117, 156
MboII	GAAGA	1 cut(s)	248
MhlI	GDGCHC	1 cut(s)	88
MluCI	AATT	1 cut(s)	259
MnlI	CCTC	4 cut(s)	25, 147, 218, 233
MslI	CAYNNNNRTG	1 cut(s)	148
MteI	GCGCNGCGC	1 cut(s)	193
MvnI	CGCG	1 cut(s)	250
MwoI	GCNNNNNNNGC	4 cut(s)	74, 83, 170, 239
NdeII	GATC	2 cut(s)	117, 156
NlaIV	GGNNCC	2 cut(s)	163, 221
NmeAIII	GCCGAG	1 cut(s)	190
NmuCI	GTSAC	1 cut(s)	99
OliI	CACNNNNGTG	1 cut(s)	148
PkrI	GCNGC	3 cut(s)	112, 194, 232
PspFI	CCCAGC	1 cut(s)	64
PspN4I	GGNNCC	2 cut(s)	163, 221
RseI	CAYNNNNRTG	1 cut(s)	148
SatI	GCNGC	3 cut(s)	111, 193, 231
Sau3AI	GATC	2 cut(s)	117, 156
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	2 cut(s)	112, 150
SfaNI	GCATC	2 cut(s)	18, 242
SmiMI	CAYNNNNRTG	1 cut(s)	148
SpeI	ACTAGT	1 cut(s)	202
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	2 cut(s)	123, 231
SspMI	CTAG	1 cut(s)	203
StyI	CCWWGG	1 cut(s)	243
TaaI	ACNGT	1 cut(s)	90
TasI	AATT	1 cut(s)	259
TauI	GCSGC	1 cut(s)	233
TseFI	GTSAC	1 cut(s)	99
TseI	GCWGC	2 cut(s)	110, 192
Tsp45I	GTSAC	1 cut(s)	99
TspGWI	ACGGA	1 cut(s)	45
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.