Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006266.1

Orthogroup ID

OG0011267

Physical Location & Seq

Genomic Coordinates Forward (+)

271127 .. 273482

Gene Structure 2356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006266.1_g000067.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

atggtgttaacactgaaagtcatctcatgtgcaataaattacaatgatgggatattgaaagaggaagggctacgtgaggctcagaagaagaatcggttgattaagttgccctcattaattgagtactttggttactgtctctcctgtggtagtcactttgccggcccagtttatgagatgaaggattatctcgactgtactgaaagcaaggggatttggagcccctcggagaaaggactgtctccatcaccatttggagcagcagttcgagctcttctccaagctgcattctgcatggcattgtatttgtatttggttccccaatttcctttgacaagatttaccgagcccatataccaagaatggggtttctggaaacgactgagctaccagtatatgtcaggatttacagcacggtggaaatattatttcatctggtcaatttcagaggcctccattattctttctggtctaggtttcagtggctggacagactcctcaccaccaaagccaaaatgggaccgtgcaaaaaatgttgatattctaggcgttgagtttgcaaagagtgcggttcagttgccacttgtttggaacatacaagtcagcacctggcttcgtcactatgtttatgaaaggcttgttaagcccgggaagaaggctggtttcttccagttactagctacacagactgttagtgctgtttggcatggactgtatcctgggtacatcatattctttgttcagtcagcattgatgattgctggttcaagagtgatttacagatggcagcaatctgtacctcaaggaatggatgttgttaagaacattctggtgttcctgaacttcgcttacactgttttagttctgaactactcatgtgttggatttattgtactgagcctccgtgaaacacttgcctcgtacgggagtgtttattacattggaaccgttctgccttttgtattgatattgcttggtaaaataatcaagcctgcaaggcctgttaagaaggttcggaaggaagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019374 GO:0019375 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046467 GO:0046486 GO:0071617 GO:0071704 GO:0071944 GO:0090407 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko00565 ko01100 ko01110 map00561 map00564 map00565 map01100 map01110

Pfam Domains

Protein Families

MBOAT

Protein Analysis

342

Amino Acids

38.95

Weight (kDa)

9.43

Isoelectric Point (pI)

50.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12640 AT1G63050
fragaria_vesca	FvH4_5g01510 FvH4_5g01510
malus_domestica	MD04G1067300.v1.1 MD06G1073000.v1.1
prunus_persica	Prupe.5G091400_v2.0.a1 Prupe.5G091400_v2.0.a1 Prupe.5G091400_v2.0.a1 Prupe.5G091400_v2.0.a1
pyrus_communis	pycom04g06040 pycom06g07240
rosa_chinensis	RchiOBHm_Chr7g0199181
rosa_laevigata	RLG00000003808
rosa_multiflora	Rmu_co8406081.1_g000001 Rmu_sc0006266.1_g000067
rosa_roxburghii	Rroxscaffold_3G00256980
rosa_rugosa	Rorug07G0053100
rosa_samantha	Rh7BG180400
rosa_wichuraiana	Rw7G015560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	569
AfaI	GTAC	6 cut(s)	125, 199, 725, 798, 894, 923
AfiI	CCNNNNNNNGG	2 cut(s)	364, 924
AgsI	TTSAA	2 cut(s)	58, 768
AjnI	CCWGG	2 cut(s)	608, 718
AloI	GAACNNNNNNTCC	2 cut(s)	249, 281
AluBI	AGCT	4 cut(s)	272, 284, 387, 680
AluI	AGCT	4 cut(s)	272, 284, 387, 680
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	2 cut(s)	143, 246
AlwNI	CAGNNNCTG	2 cut(s)	486, 609
Ama87I	CYCGRG	1 cut(s)	647
AoxI	GGCC	3 cut(s)	163, 450, 998
ApeKI	GCWGC	3 cut(s)	260, 284, 787
AseI	ATTAAT	1 cut(s)	116
AspS9I	GGNCC	2 cut(s)	164, 520
AsuC2I	CCSGG	2 cut(s)	648, 649
AsuHPI	GGTGA	2 cut(s)	240, 492
AvaI	CYCGRG	1 cut(s)	647
AvaII	GGWCC	1 cut(s)	520
BanII	GRGCYC	3 cut(s)	224, 274, 351
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	3 cut(s)	271, 272, 799
BccI	CCATC	3 cut(s)	41, 253, 777
BciT130I	CCWGG	2 cut(s)	610, 720
BciVI	GTATCC	1 cut(s)	726
BcnI	CCSGG	2 cut(s)	648, 649
BcoDI	GTCTC	2 cut(s)	143, 246
BfaI	CTAG	3 cut(s)	473, 545, 677
BfuI	GTATCC	1 cut(s)	726
BglI	GCCNNNNNGGC	1 cut(s)	997
BisI	GCNGC	3 cut(s)	261, 285, 788
BlsI	GCNGC	3 cut(s)	262, 286, 789
BmcAI	AGTACT	1 cut(s)	125
Bme1390I	CCNGG	4 cut(s)	610, 648, 649, 720
Bme18I	GGWCC	1 cut(s)	520
BmeT110I	CYCGRG	1 cut(s)	647
BmgT120I	GGNCC	2 cut(s)	164, 520
BmiI	GGNNCC	4 cut(s)	221, 318, 521, 946
BmrFI	CCNGG	4 cut(s)	610, 648, 649, 720
BmrI	ACTGGG	1 cut(s)	161
BmuI	ACTGGG	1 cut(s)	161
BplI	GAGNNNNNCTC	2 cut(s)	261, 293
BpuEI	CTTGAG	1 cut(s)	786
BpuMI	CCSGG	2 cut(s)	648, 649
BsaAI	YACGTR	1 cut(s)	74
BsaJI	CCNNGG	3 cut(s)	225, 647, 719
BsaXI	ACNNNNNCTCC	6 cut(s)	125, 155, 249, 279, 885, 915
Bsc4I	CCNNNNNNNGG	2 cut(s)	364, 924
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	3 cut(s)	167, 391, 670
BseBI	CCWGG	2 cut(s)	610, 720
BseDI	CCNNGG	3 cut(s)	225, 647, 719
BseGI	GGATG	1 cut(s)	817
BseLI	CCNNNNNNNGG	2 cut(s)	364, 924
BseMII	CTCAG	3 cut(s)	95, 374, 887
BseNI	ACTGG	3 cut(s)	167, 391, 670
BseRI	GAGGAG	1 cut(s)	487
BseXI	GCAGC	3 cut(s)	271, 272, 799
BshFI	GGCC	3 cut(s)	165, 452, 1000
BsiHKAI	GWGCWC	1 cut(s)	274
BsiHKCI	CYCGRG	1 cut(s)	647
BsiSI	CCGG	2 cut(s)	162, 648
BsiWI	CGTACG	1 cut(s)	921
BslFI	GGGAC	1 cut(s)	533
BslI	CCNNNNNNNGG	2 cut(s)	364, 924
BsmAI	GTCTC	2 cut(s)	143, 246
BsmFI	GGGAC	1 cut(s)	533
BsmI	GAATGC	1 cut(s)	287
BsnI	GGCC	3 cut(s)	165, 452, 1000
BsoBI	CYCGRG	1 cut(s)	647
Bsp1286I	GDGCHC	3 cut(s)	224, 274, 351
BspACI	CCGC	1 cut(s)	569
BspANI	GGCC	3 cut(s)	165, 452, 1000
BspCNI	CTCAG	3 cut(s)	94, 375, 888
BspLI	GGNNCC	4 cut(s)	221, 318, 521, 946
BspQI	GCTCTTC	1 cut(s)	279
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	3 cut(s)	167, 391, 670
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	3 cut(s)	225, 647, 719
Bst2UI	CCWGG	2 cut(s)	610, 720
Bst4CI	ACNGT	9 cut(s)	137, 197, 240, 417, 524, 691, 714, 856, 949
Bst6I	CTCTTC	1 cut(s)	279
BstAPI	GCANNNNNTGC	1 cut(s)	566
BstBAI	YACGTR	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	163, 993
BstDEI	CTNAG	3 cut(s)	81, 383, 896
BstF5I	GGATG	1 cut(s)	817
BstMAI	GTCTC	2 cut(s)	143, 246
BstMWI	GCNNNNNNNGC	4 cut(s)	269, 566, 643, 997
BstNI	CCWGG	2 cut(s)	610, 720
BstSCI	CCNGG	4 cut(s)	608, 646, 647, 718
BstV1I	GCAGC	3 cut(s)	271, 272, 799
BstXI	CCANNNNNNTGG	1 cut(s)	588
BsuI	GTATCC	1 cut(s)	726
BsuRI	GGCC	3 cut(s)	165, 452, 1000
BtsCI	GGATG	1 cut(s)	817
BtsIMutI	CAGTG	3 cut(s)	11, 487, 852
Cac8I	GCNNGC	2 cut(s)	163, 993
CaiI	CAGNNNCTG	2 cut(s)	486, 609
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	164, 520
Cfr9I	CCCGGG	1 cut(s)	647
Csp6I	GTAC	6 cut(s)	124, 198, 724, 797, 893, 922
CviAII	CATG	4 cut(s)	27, 295, 707, 876
CviQI	GTAC	6 cut(s)	124, 198, 724, 797, 893, 922
DdeI	CTNAG	3 cut(s)	81, 383, 896
Eam1104I	CTCTTC	1 cut(s)	279
EarI	CTCTTC	1 cut(s)	279
Ecl136II	GAGCTC	1 cut(s)	272
Eco147I	AGGCCT	2 cut(s)	452, 1000
Eco24I	GRGCYC	3 cut(s)	224, 274, 351
Eco47I	GGWCC	1 cut(s)	520
Eco53kI	GAGCTC	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	647
EcoICRI	GAGCTC	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	608, 718
EcoT38I	GRGCYC	3 cut(s)	224, 274, 351
FaeI	CATG	4 cut(s)	30, 298, 710, 879
FaqI	GGGAC	1 cut(s)	533
FatI	CATG	4 cut(s)	26, 294, 706, 875
Fnu4HI	GCNGC	3 cut(s)	261, 285, 788
FokI	GGATG	1 cut(s)	824
FriOI	GRGCYC	3 cut(s)	224, 274, 351
Fsp4HI	GCNGC	3 cut(s)	261, 285, 788
FspBI	CTAG	3 cut(s)	473, 545, 677
GluI	GCNGC	3 cut(s)	261, 285, 788
HaeIII	GGCC	3 cut(s)	165, 452, 1000
HapII	CCGG	2 cut(s)	162, 648
Hin1II	CATG	4 cut(s)	30, 298, 710, 879
HincII	GTYRAC	1 cut(s)	9
HindII	GTYRAC	1 cut(s)	9
HinfI	GANTC	2 cut(s)	91, 494
HpaI	GTTAAC	1 cut(s)	9
HpaII	CCGG	2 cut(s)	162, 648
HphI	GGTGA	2 cut(s)	240, 492
Hpy166II	GTNNAC	1 cut(s)	9
Hpy188I	TCNGA	5 cut(s)	84, 229, 448, 867, 1017
Hpy188III	TCNNGA	5 cut(s)	191, 373, 402, 768, 838
Hpy8I	GTNNAC	1 cut(s)	9
HpyAV	CCTTC	5 cut(s)	59, 175, 649, 1003, 1012
HpyCH4III	ACNGT	9 cut(s)	137, 197, 240, 417, 524, 691, 714, 856, 949
HpyCH4IV	ACGT	1 cut(s)	73
HpyCH4V	TGCA	6 cut(s)	32, 287, 294, 527, 560, 995
HpyF10VI	GCNNNNNNNGC	4 cut(s)	269, 566, 643, 997
HpyF3I	CTNAG	3 cut(s)	81, 383, 896
HpySE526I	ACGT	1 cut(s)	73
Hsp92II	CATG	4 cut(s)	30, 298, 710, 879
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
KspAI	GTTAAC	1 cut(s)	9
LguI	GCTCTTC	1 cut(s)	279
LmnI	GCTCC	2 cut(s)	219, 257
Lsp1109I	GCAGC	3 cut(s)	271, 272, 799
MaeI	CTAG	3 cut(s)	473, 545, 677
MaeII	ACGT	1 cut(s)	73
MaeIII	GTNAC	4 cut(s)	131, 152, 617, 672
MboII	GAAGA	5 cut(s)	97, 100, 266, 658, 664
MhlI	GDGCHC	3 cut(s)	224, 274, 351
MluCI	AATT	4 cut(s)	37, 117, 323, 441
MlyI	GAGTC	1 cut(s)	488
MmeI	TCCRAC	1 cut(s)	862
MroNI	GCCGGC	1 cut(s)	161
MseI	TTAA	6 cut(s)	8, 102, 116, 642, 819, 1005
MslI	CAYNNNNRTG	1 cut(s)	830
MspI	CCGG	2 cut(s)	162, 648
MspR9I	CCNGG	4 cut(s)	610, 648, 649, 720
Mva1269I	GAATGC	1 cut(s)	287
MvaI	CCWGG	2 cut(s)	610, 720
MwoI	GCNNNNNNNGC	4 cut(s)	269, 566, 643, 997
NaeI	GCCGGC	1 cut(s)	163
NciI	CCSGG	2 cut(s)	648, 649
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	4 cut(s)	30, 298, 710, 879
NlaIV	GGNNCC	4 cut(s)	221, 318, 521, 946
NmuCI	GTSAC	2 cut(s)	152, 617
PceI	AGGCCT	2 cut(s)	452, 1000
PciSI	GCTCTTC	1 cut(s)	279
PctI	GAATGC	1 cut(s)	287
PdiI	GCCGGC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	91
Pfl23II	CGTACG	1 cut(s)	921
PkrI	GCNGC	3 cut(s)	262, 286, 789
PleI	GAGTC	1 cut(s)	488
PpsI	GAGTC	1 cut(s)	488
Ppu21I	YACGTR	1 cut(s)	74
PshBI	ATTAAT	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	274
Psp6I	CCWGG	2 cut(s)	608, 718
PspGI	CCWGG	2 cut(s)	608, 718
PspLI	CGTACG	1 cut(s)	921
PspN4I	GGNNCC	4 cut(s)	221, 318, 521, 946
PspPI	GGNCC	2 cut(s)	164, 520
PsrI	GAACNNNNNNTAC	2 cut(s)	833, 865
PstNI	CAGNNNCTG	2 cut(s)	486, 609
RsaI	GTAC	6 cut(s)	125, 199, 725, 798, 894, 923
RsaNI	GTAC	6 cut(s)	124, 198, 724, 797, 893, 922
RseI	CAYNNNNRTG	1 cut(s)	830
SacI	GAGCTC	1 cut(s)	274
SapI	GCTCTTC	1 cut(s)	279
SaqAI	TTAA	6 cut(s)	8, 102, 116, 642, 819, 1005
SatI	GCNGC	3 cut(s)	261, 285, 788
Sau96I	GGNCC	2 cut(s)	164, 520
ScaI	AGTACT	1 cut(s)	125
SchI	GAGTC	1 cut(s)	488
ScrFI	CCNGG	4 cut(s)	610, 648, 649, 720
SduI	GDGCHC	3 cut(s)	224, 274, 351
SetI	ASST	9 cut(s)	76, 274, 286, 389, 478, 611, 682, 802, 1014
SinI	GGWCC	1 cut(s)	520
SmaI	CCCGGG	1 cut(s)	649
SmiMI	CAYNNNNRTG	1 cut(s)	830
SmlI	CTYRAG	1 cut(s)	801
SmoI	CTYRAG	1 cut(s)	801
Sse9I	AATT	4 cut(s)	37, 117, 323, 441
SseBI	AGGCCT	2 cut(s)	452, 1000
SsiI	CCGC	1 cut(s)	569
SspI	AATATT	1 cut(s)	425
SspMI	CTAG	3 cut(s)	473, 545, 677
SstI	GAGCTC	1 cut(s)	274
StuI	AGGCCT	2 cut(s)	452, 1000
StyD4I	CCNGG	4 cut(s)	608, 646, 647, 718
TaaI	ACNGT	9 cut(s)	137, 197, 240, 417, 524, 691, 714, 856, 949
TaiI	ACGT	1 cut(s)	76
TaqI	TCGA	2 cut(s)	192, 268
TasI	AATT	4 cut(s)	37, 117, 323, 441
TatI	WGTACW	3 cut(s)	123, 197, 892
TfiI	GAWTC	1 cut(s)	91
Tru1I	TTAA	6 cut(s)	8, 102, 116, 642, 819, 1005
Tru9I	TTAA	6 cut(s)	8, 102, 116, 642, 819, 1005
TscAI	CASTG	3 cut(s)	18, 487, 859
TseFI	GTSAC	2 cut(s)	152, 617
TseI	GCWGC	3 cut(s)	260, 284, 787
Tsp45I	GTSAC	2 cut(s)	152, 617
TspDTI	ATGAA	3 cut(s)	194, 421, 645
TspGWI	ACGGA	1 cut(s)	893
TspMI	CCCGGG	1 cut(s)	647
TspRI	CASTG	3 cut(s)	18, 487, 859
VpaK11BI	GGWCC	1 cut(s)	520
VspI	ATTAAT	1 cut(s)	116
XcmI	CCANNNNNNNNNTGG	1 cut(s)	513
XmaI	CCCGGG	1 cut(s)	647
XspI	CTAG	3 cut(s)	473, 545, 677
ZrmI	AGTACT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.