Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0000883

Physical Location & Seq

Genomic Coordinates Reverse (-)

3769925 .. 3773012

Gene Structure 3088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0053100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGCTTCCTCACACTGCTTTGCTCCTTTTGTATTTCTACTACTTGTTGGATGTTCTGGAAGGCCATTATATCCACTTCCAAGTAAGGAGGCCAATAGATATAGACAGCCTCTACAAACTTCTAGACCATACAACATTGCACATCGAGGATCAAATGGAGAGATTCCTGAAGAAACTGCTGCAGCATACATGAGAGCAATTGAAGAGGGTGCAGACTTCATTGAAACAGATATTCTATCTTCTAAAGATGGTGTCCTTATATGCTTTCATGATGTGACCCTCGATGAGACAACTGATATTGCAAAGCATAAGGAATTTGCAGATCGCAAACGGACCTATGACGTTCAAGGGGTCAACACCACTGGTTTTTTCACTGTTGATTTTACACTTAAAGAACTGAAGACATTACGAGTGAAGCAGAGATGCCCATTTCGTGATCAACAATATAATGGAAAATTTCCTATTATTACTTTTGAGGAGTTTATTTCAATCGCACTGGATGCACCCAGAGTTGTTGGCATATATCCGGAGATTAAGAATCCTGTATTGATCAACCAACATGTAAAGTGGTCAAATGGTAAGAGATTCGAGGACAAGTTTGTGGAGACACTTAAAAAGTACGGATACAAGGGTTCATATATGTCGAAAGATTGGCTGAAACAACCTGCATTTATCCAGTCATTTGCTCCAACTTCACTTGTTTATGTATCAAATCTGACGGACTTGCCCAAGATCTTTTTGATTGACGATATCACAATTCCTACTCAAGACACCAATCAGTCGTATTGGGAAATTACTTCAGACAGCTACCTTAGCTACATTAAGGAGTATGTGGTAGGCATTGGACCTTGGAAGGATACTGTGGTTCCTGTAGTAAATAATTATTTGCAAACACCTACAGATCTGGTCCCCAGGGCTCATGCACATAACCTACAGGTGCACCCTTATACATTCAGGAATGAGAACTCCTTCCTGCACTTTGACTTTCATGAAGATCCGTATCAAGAGTACGAGTACTGGCTTAATAAGATTGGTGTTGATGGACTCTTTACAGACTTCACAGGCAGCCTGCATAATTATCAAGAATGGACCTCTTTTAATCAAAGTGATAACAATAATGCATCAAAGCTATTGCATAAAATAGCATTGCTGGTCTCTTCCTATACAAAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005886 GO:0006629 GO:0006643 GO:0006644 GO:0006664 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009247 GO:0009987 GO:0012505 GO:0016020 GO:0016740 GO:0016746 GO:0016747 GO:0019374 GO:0019375 GO:0019637 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0045017 GO:0046467 GO:0046486 GO:0071617 GO:0071704 GO:0071944 GO:0090407 GO:1901135 GO:1901137 GO:1901576 GO:1903509

KEGG Pathways

Metabolic & Signaling

ko00561 ko00564 ko00565 ko01100 ko01110 map00561 map00564 map00565 map01100 map01110

Pfam Domains

Protein Families

MBOAT

Protein Analysis

391

Amino Acids

45.06

Weight (kDa)

5.96

Isoelectric Point (pI)

36.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	48 - 355	4.5e-56	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000883)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08720 FvH4_3g22621 FvH4_4g11702 FvH4_5g01520 FvH4_5g01520 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g36380 FvH4_6g01730 FvH4_6g09170 FvH4_6g20010 FvH4_6g28113
malus_domestica	MD06G1073100.v1.1
prunus_persica	Prupe.2G067700_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.7G013000_v2.0.a1
pyrus_communis	pycom01g10330 pycom06g07250
rosa_chinensis	RchiOBHm_Chr7g0199161 RchiOBHm_Chr7g0199171
rosa_laevigata	RLG00000003809 RLG00000014802
rosa_multiflora	Rmu_sc0004791.1_g000001 Rmu_sc0006115.1_g000003 Rmu_sc0037059.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015450 Rroxscaffold_1G00015460 Rroxscaffold_3G00256990 Rroxscaffold_3G00257000 Rroxscaffold_4G00326050 Rroxscaffold_7G00182010
rosa_rugosa	Rorug03G0005500 Rorug03G0273000 Rorug05G0372800 Rorug05G0372900 Rorug07G0053100
rosa_samantha	Rh1BG202800 Rh1DG102500 Rh3AG101900 Rh3AG320900 Rh3CG107700 Rh3DG355100 Rh7AG176700 Rh7AG176800 Rh7AG365300 Rh7BG180300 Rh7CG185900 Rh7CG186000 Rh7CG384200 Rh7DG179700 Rh7DG179800
rosa_wichuraiana	Rw1G014270 Rw3G028010 Rw7G015540 Rw7G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	673
AccIII	TCCGGA	1 cut(s)	526
AclWI	GGATC	2 cut(s)	157, 989
AcsI	RAATTY	2 cut(s)	314, 455
AcuI	CTGAAG	3 cut(s)	189, 419, 783
AfaI	GTAC	3 cut(s)	620, 1010, 1016
AflIII	ACRYGT	1 cut(s)	559
AgsI	TTSAA	4 cut(s)	203, 224, 347, 489
AjnI	CCWGG	1 cut(s)	911
AluBI	AGCT	3 cut(s)	807, 816, 1129
AluI	AGCT	3 cut(s)	807, 816, 1129
Alw21I	GWGCWC	1 cut(s)	942
Alw26I	GTCTC	3 cut(s)	281, 599, 1159
Alw44I	GTGCAC	1 cut(s)	938
AlwI	GGATC	2 cut(s)	157, 989
Aor13HI	TCCGGA	1 cut(s)	526
AoxI	GGCC	2 cut(s)	62, 90
ApaLI	GTGCAC	1 cut(s)	938
ApeKI	GCWGC	3 cut(s)	179, 182, 1065
ApoI	RAATTY	2 cut(s)	314, 455
Asp700I	GAANNNNTTC	1 cut(s)	968
AspS9I	GGNCC	4 cut(s)	333, 845, 907, 1089
AvaII	GGWCC	4 cut(s)	333, 845, 907, 1089
BaeGI	GKGCMC	1 cut(s)	942
BaeI	ACNNNNGTAYC	4 cut(s)	616, 649, 849, 882
BanII	GRGCYC	1 cut(s)	919
BbsI	GAAGAC	1 cut(s)	407
Bbv12I	GWGCWC	1 cut(s)	942
BbvI	GCAGC	3 cut(s)	166, 194, 1077
BccI	CCATC	2 cut(s)	242, 1034
BciT130I	CCWGG	1 cut(s)	913
BciVI	GTATCC	2 cut(s)	617, 850
BclI	TGATCA	2 cut(s)	436, 549
BcoDI	GTCTC	3 cut(s)	281, 599, 1159
BfaI	CTAG	1 cut(s)	123
BfmI	CTRYAG	4 cut(s)	180, 870, 897, 932
BfuAI	ACCTGC	1 cut(s)	673
BfuI	GTATCC	2 cut(s)	617, 850
BglII	AGATCT	2 cut(s)	732, 901
BisI	GCNGC	3 cut(s)	180, 183, 1066
BlsI	GCNGC	3 cut(s)	181, 184, 1067
BmcAI	AGTACT	1 cut(s)	1016
Bme1390I	CCNGG	1 cut(s)	913
Bme18I	GGWCC	4 cut(s)	333, 845, 907, 1089
BmgT120I	GGNCC	4 cut(s)	333, 845, 907, 1089
BmiI	GGNNCC	2 cut(s)	867, 909
BmrFI	CCNGG	1 cut(s)	913
BmsI	GCATC	3 cut(s)	413, 490, 1130
BpiI	GAAGAC	1 cut(s)	407
Bpu10I	CCTNAGC	1 cut(s)	812
BpuEI	CTTGAG	1 cut(s)	750
BsaBI	GATNNNNATC	1 cut(s)	999
BsaI	GGTCTC	1 cut(s)	1159
BsaJI	CCNNGG	3 cut(s)	848, 911, 912
BsaWI	WCCGGW	1 cut(s)	526
Bse1I	ACTGG	4 cut(s)	367, 501, 676, 1022
Bse3DI	GCAATG	2 cut(s)	135, 1145
Bse8I	GATNNNNATC	1 cut(s)	999
BseAI	TCCGGA	1 cut(s)	526
BseBI	CCWGG	1 cut(s)	913
BseDI	CCNNGG	3 cut(s)	848, 911, 912
BseGI	GGATG	2 cut(s)	56, 505
BseJI	GATNNNNATC	1 cut(s)	999
BseMI	GCAATG	2 cut(s)	135, 1145
BseNI	ACTGG	4 cut(s)	367, 501, 676, 1022
BseRI	GAGGAG	1 cut(s)	491
BseSI	GKGCMC	1 cut(s)	942
BseXI	GCAGC	3 cut(s)	166, 194, 1077
BsgI	GTGCAG	2 cut(s)	231, 959
BshFI	GGCC	2 cut(s)	64, 92
BsiHKAI	GWGCWC	1 cut(s)	942
BsiSI	CCGG	1 cut(s)	527
BslFI	GGGAC	1 cut(s)	893
BsmAI	GTCTC	3 cut(s)	281, 599, 1159
BsmFI	GGGAC	1 cut(s)	893
BsnI	GGCC	2 cut(s)	64, 92
Bso31I	GGTCTC	1 cut(s)	1159
Bsp1286I	GDGCHC	2 cut(s)	919, 942
Bsp13I	TCCGGA	1 cut(s)	526
Bsp143I	GATC	7 cut(s)	149, 322, 436, 549, 732, 901, 994
BspANI	GGCC	2 cut(s)	64, 92
BspEI	TCCGGA	1 cut(s)	526
BspHI	TCATGA	2 cut(s)	268, 988
BspLI	GGNNCC	2 cut(s)	867, 909
BspMAI	CTGCAG	1 cut(s)	184
BspMI	ACCTGC	1 cut(s)	673
BspPI	GGATC	2 cut(s)	157, 989
BspTNI	GGTCTC	1 cut(s)	1159
BsrDI	GCAATG	2 cut(s)	135, 1145
BsrI	ACTGG	4 cut(s)	367, 501, 676, 1022
BssECI	CCNNGG	3 cut(s)	848, 911, 912
BssMI	GATC	7 cut(s)	149, 322, 436, 549, 732, 901, 994
BssT1I	CCWWGG	1 cut(s)	848
Bst2UI	CCWGG	1 cut(s)	913
Bst4CI	ACNGT	2 cut(s)	376, 862
Bst6I	CTCTTC	2 cut(s)	198, 1162
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstC8I	GCNNGC	1 cut(s)	1070
BstDEI	CTNAG	1 cut(s)	812
BstF5I	GGATG	2 cut(s)	56, 505
BstKTI	GATC	7 cut(s)	152, 325, 439, 552, 735, 904, 997
BstMAI	GTCTC	3 cut(s)	281, 599, 1159
BstMBI	GATC	7 cut(s)	149, 322, 436, 549, 732, 901, 994
BstMWI	GCNNNNNNNGC	2 cut(s)	500, 813
BstNI	CCWGG	1 cut(s)	913
BstNSI	RCATGY	1 cut(s)	563
BstSCI	CCNGG	1 cut(s)	911
BstSFI	CTRYAG	4 cut(s)	180, 870, 897, 932
BstSLI	GKGCMC	1 cut(s)	942
BstV1I	GCAGC	3 cut(s)	166, 194, 1077
BstV2I	GAAGAC	1 cut(s)	407
BstX2I	RGATCY	3 cut(s)	732, 901, 994
BstYI	RGATCY	3 cut(s)	732, 901, 994
BsuI	GTATCC	2 cut(s)	617, 850
BsuRI	GGCC	2 cut(s)	64, 92
BtsCI	GGATG	2 cut(s)	56, 505
BtsI	GCAGTG	1 cut(s)	13
BtsIMutI	CAGTG	4 cut(s)	13, 360, 372, 494
BveI	ACCTGC	1 cut(s)	673
Cac8I	GCNNGC	1 cut(s)	1070
CciI	TCATGA	2 cut(s)	268, 988
Cfr13I	GGNCC	4 cut(s)	333, 845, 907, 1089
Csp6I	GTAC	3 cut(s)	619, 1009, 1015
CviAII	CATG	6 cut(s)	190, 269, 560, 920, 989, 1173
CviQI	GTAC	3 cut(s)	619, 1009, 1015
DdeI	CTNAG	1 cut(s)	812
DpnI	GATC	7 cut(s)	151, 324, 438, 551, 734, 903, 996
DpnII	GATC	7 cut(s)	149, 322, 436, 549, 732, 901, 994
Eam1104I	CTCTTC	2 cut(s)	198, 1162
EarI	CTCTTC	2 cut(s)	198, 1162
Eco130I	CCWWGG	1 cut(s)	848
Eco24I	GRGCYC	1 cut(s)	919
Eco31I	GGTCTC	1 cut(s)	1159
Eco32I	GATATC	1 cut(s)	751
Eco47I	GGWCC	4 cut(s)	333, 845, 907, 1089
Eco57I	CTGAAG	3 cut(s)	189, 419, 783
EcoRII	CCWGG	1 cut(s)	911
EcoRV	GATATC	1 cut(s)	751
EcoT14I	CCWWGG	1 cut(s)	848
EcoT22I	ATGCAT	1 cut(s)	1123
EcoT38I	GRGCYC	1 cut(s)	919
ErhI	CCWWGG	1 cut(s)	848
FaeI	CATG	6 cut(s)	193, 272, 563, 923, 992, 1176
FaqI	GGGAC	1 cut(s)	893
FatI	CATG	6 cut(s)	189, 268, 559, 919, 988, 1172
FbaI	TGATCA	2 cut(s)	436, 549
Fnu4HI	GCNGC	3 cut(s)	180, 183, 1066
FokI	GGATG	2 cut(s)	63, 512
FriOI	GRGCYC	1 cut(s)	919
Fsp4HI	GCNGC	3 cut(s)	180, 183, 1066
FspBI	CTAG	1 cut(s)	123
GluI	GCNGC	3 cut(s)	180, 183, 1066
HaeIII	GGCC	2 cut(s)	64, 92
HapII	CCGG	1 cut(s)	527
Hin1II	CATG	6 cut(s)	193, 272, 563, 923, 992, 1176
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HinfI	GANTC	4 cut(s)	163, 538, 585, 1044
HpaII	CCGG	1 cut(s)	527
Hpy166II	GTNNAC	2 cut(s)	355, 940
Hpy188I	TCNGA	2 cut(s)	717, 802
Hpy8I	GTNNAC	2 cut(s)	355, 940
HpyAV	CCTTC	3 cut(s)	54, 847, 979
HpyCH4III	ACNGT	2 cut(s)	376, 862
HpyCH4IV	ACGT	1 cut(s)	342
HpyF10VI	GCNNNNNNNGC	2 cut(s)	500, 813
HpyF3I	CTNAG	1 cut(s)	812
HpySE526I	ACGT	1 cut(s)	342
Hsp92II	CATG	6 cut(s)	193, 272, 563, 923, 992, 1176
Kpn2I	TCCGGA	1 cut(s)	526
Ksp22I	TGATCA	2 cut(s)	436, 549
Kzo9I	GATC	7 cut(s)	149, 322, 436, 549, 732, 901, 994
LmnI	GCTCC	2 cut(s)	28, 691
Lsp1109I	GCAGC	3 cut(s)	166, 194, 1077
LweI	GCATC	3 cut(s)	413, 490, 1130
MaeI	CTAG	1 cut(s)	123
MaeII	ACGT	1 cut(s)	342
MaeIII	GTNAC	1 cut(s)	274
MalI	GATC	7 cut(s)	151, 324, 438, 551, 734, 903, 996
MboI	GATC	7 cut(s)	149, 322, 436, 549, 732, 901, 994
MboII	GAAGA	6 cut(s)	182, 215, 231, 412, 1004, 1149
MfeI	CAATTG	1 cut(s)	198
MflI	RGATCY	3 cut(s)	732, 901, 994
MhlI	GDGCHC	2 cut(s)	919, 942
MluCI	AATT	7 cut(s)	198, 314, 455, 756, 792, 880, 1075
MlyI	GAGTC	1 cut(s)	1038
MmeI	TCCRAC	2 cut(s)	28, 713
MnlI	CCTC	9 cut(s)	19, 82, 120, 140, 199, 290, 469, 583, 1102
Mph1103I	ATGCAT	1 cut(s)	1123
MroI	TCCGGA	1 cut(s)	526
MroXI	GAANNNNTTC	1 cut(s)	968
MseI	TTAA	6 cut(s)	390, 534, 612, 822, 1023, 1098
MspI	CCGG	1 cut(s)	527
MspR9I	CCNGG	1 cut(s)	913
MunI	CAATTG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	913
MwoI	GCNNNNNNNGC	2 cut(s)	500, 813
NdeII	GATC	7 cut(s)	149, 322, 436, 549, 732, 901, 994
NlaIII	CATG	6 cut(s)	193, 272, 563, 923, 992, 1176
NlaIV	GGNNCC	2 cut(s)	867, 909
NmuCI	GTSAC	1 cut(s)	274
NsiI	ATGCAT	1 cut(s)	1123
NspI	RCATGY	1 cut(s)	563
PagI	TCATGA	2 cut(s)	268, 988
PasI	CCCWGGG	1 cut(s)	912
PciI	ACATGT	1 cut(s)	559
PdmI	GAANNNNTTC	1 cut(s)	968
PfeI	GAWTC	3 cut(s)	163, 538, 585
PkrI	GCNGC	3 cut(s)	181, 184, 1067
PleI	GAGTC	1 cut(s)	1038
PpsI	GAGTC	1 cut(s)	1038
PscI	ACATGT	1 cut(s)	559
Psp6I	CCWGG	1 cut(s)	911
PspGI	CCWGG	1 cut(s)	911
PspN4I	GGNNCC	2 cut(s)	867, 909
PspPI	GGNCC	4 cut(s)	333, 845, 907, 1089
PstI	CTGCAG	1 cut(s)	184
PsuI	RGATCY	3 cut(s)	732, 901, 994
RsaI	GTAC	3 cut(s)	620, 1010, 1016
RsaNI	GTAC	3 cut(s)	619, 1009, 1015
SaqAI	TTAA	6 cut(s)	390, 534, 612, 822, 1023, 1098
SatI	GCNGC	3 cut(s)	180, 183, 1066
Sau3AI	GATC	7 cut(s)	149, 322, 436, 549, 732, 901, 994
Sau96I	GGNCC	4 cut(s)	333, 845, 907, 1089
ScaI	AGTACT	1 cut(s)	1016
SchI	GAGTC	1 cut(s)	1038
ScrFI	CCNGG	1 cut(s)	913
SduI	GDGCHC	2 cut(s)	919, 942
SfaNI	GCATC	3 cut(s)	413, 490, 1130
SfcI	CTRYAG	4 cut(s)	180, 870, 897, 932
SinI	GGWCC	4 cut(s)	333, 845, 907, 1089
SmlI	CTYRAG	1 cut(s)	765
SmoI	CTYRAG	1 cut(s)	765
Sse9I	AATT	7 cut(s)	198, 314, 455, 756, 792, 880, 1075
SspMI	CTAG	1 cut(s)	123
StyD4I	CCNGG	1 cut(s)	911
StyI	CCWWGG	1 cut(s)	848
TaaI	ACNGT	2 cut(s)	376, 862
TaiI	ACGT	1 cut(s)	345
TaqI	TCGA	4 cut(s)	145, 282, 588, 644
TasI	AATT	7 cut(s)	198, 314, 455, 756, 792, 880, 1075
TatI	WGTACW	1 cut(s)	1014
TfiI	GAWTC	3 cut(s)	163, 538, 585
Tru1I	TTAA	6 cut(s)	390, 534, 612, 822, 1023, 1098
Tru9I	TTAA	6 cut(s)	390, 534, 612, 822, 1023, 1098
TscAI	CASTG	4 cut(s)	20, 367, 379, 501
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	3 cut(s)	179, 182, 1065
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	5 cut(s)	208, 257, 624, 977, 1005
TspGWI	ACGGA	4 cut(s)	346, 636, 734, 987
TspRI	CASTG	4 cut(s)	20, 367, 379, 501
VneI	GTGCAC	1 cut(s)	938
VpaK11BI	GGWCC	4 cut(s)	333, 845, 907, 1089
XapI	RAATTY	2 cut(s)	314, 455
XbaI	TCTAGA	1 cut(s)	122
XceI	RCATGY	1 cut(s)	563
XmnI	GAANNNNTTC	1 cut(s)	968
XspI	CTAG	1 cut(s)	123
ZrmI	AGTACT	1 cut(s)	1016
Zsp2I	ATGCAT	1 cut(s)	1123

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.