Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000883

Physical Location & Seq

Genomic Coordinates Reverse (-)

15654549 .. 15660535

Gene Structure 5987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22621.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTTGAATGCACATGTTGAAGGATCGAAAGGACATGTTGAAGGATTGAAGCGTGAGAAGGAGAACTGTAACAGTGATGTGGAGATTCTAAATGAAACAAAGACGTTGGAGTGTGACATAGATGTATTTGATGAGTGGGCAAAGAACAAAAAGGATGCAAAAGTTTTGTATGTAATTGATGAAACTGAAAATGAATATGTGTCTTTTGCACAACCAAGTCCTTCCCAGCCACAAAGTGTTAAGCAACGTGCTAAACAGAAGGGATTGGCCCAAGATGCAGAAAATGCTCCAAATAATACTCGAAGAAAGGCAAGAGCTTTGGATGATATGACAAAAAAATTTAGAGTGATCACCGAATCCATTGCAGCCATGGCTATAAAGTTTGAAGGTTTGGTTGATGTTCTCTCAACAGATAAGGATATTGCTGATATGCAAGGCAAACTTCATGGTGAGCTTAGCAAAATGAACATATTGTCTCCGGTGCAGGCAAAGGCCAAGGCCAAGAAGGATGGAGCTAAGGCAAAGGAGGGAGCAGTGGAGATAAGAATTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

185

Amino Acids

20.41

Weight (kDa)

6.85

Isoelectric Point (pI)

40.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000883)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08720 FvH4_3g22621 FvH4_4g11702 FvH4_5g01520 FvH4_5g01520 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g36380 FvH4_6g01730 FvH4_6g09170 FvH4_6g20010 FvH4_6g28113
malus_domestica	MD06G1073100.v1.1
prunus_persica	Prupe.2G067700_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.7G013000_v2.0.a1
pyrus_communis	pycom01g10330 pycom06g07250
rosa_chinensis	RchiOBHm_Chr7g0199161 RchiOBHm_Chr7g0199171
rosa_laevigata	RLG00000003809 RLG00000014802
rosa_multiflora	Rmu_sc0004791.1_g000001 Rmu_sc0006115.1_g000003 Rmu_sc0037059.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015450 Rroxscaffold_1G00015460 Rroxscaffold_3G00256990 Rroxscaffold_3G00257000 Rroxscaffold_4G00326050 Rroxscaffold_7G00182010
rosa_rugosa	Rorug03G0005500 Rorug03G0273000 Rorug05G0372800 Rorug05G0372900 Rorug07G0053100
rosa_samantha	Rh1BG202800 Rh1DG102500 Rh3AG101900 Rh3AG320900 Rh3CG107700 Rh3DG355100 Rh7AG176700 Rh7AG176800 Rh7AG365300 Rh7BG180300 Rh7CG185900 Rh7CG186000 Rh7CG384200 Rh7DG179700 Rh7DG179800
rosa_wichuraiana	Rw1G014270 Rw3G028010 Rw7G015540 Rw7G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	31
AcsI	RAATTY	1 cut(s)	338
AdeI	CACNNNGTG	1 cut(s)	236
AflIII	ACRYGT	2 cut(s)	13, 34
AgsI	TTSAA	5 cut(s)	7, 20, 41, 49, 386
AluBI	AGCT	3 cut(s)	317, 454, 515
AluI	AGCT	3 cut(s)	317, 454, 515
Alw26I	GTCTC	1 cut(s)	480
AlwI	GGATC	1 cut(s)	31
AoxI	GGCC	3 cut(s)	267, 492, 498
ApeKI	GCWGC	1 cut(s)	365
ApoI	RAATTY	1 cut(s)	338
AspS9I	GGNCC	1 cut(s)	268
AsuHPI	GGTGA	2 cut(s)	343, 461
BbvI	GCAGC	1 cut(s)	377
BccI	CCATC	1 cut(s)	503
BcgI	CGANNNNNNTGC	2 cut(s)	344, 378
BclI	TGATCA	1 cut(s)	348
BcoDI	GTCTC	1 cut(s)	480
BisI	GCNGC	1 cut(s)	366
BlpI	GCTNAGC	1 cut(s)	455
BlsI	GCNGC	1 cut(s)	367
BmgT120I	GGNCC	1 cut(s)	268
BmsI	GCATC	2 cut(s)	145, 265
Bpu10I	CCTNAGC	1 cut(s)	516
Bpu1102I	GCTNAGC	1 cut(s)	455
BsaJI	CCNNGG	2 cut(s)	369, 495
BsaWI	WCCGGW	1 cut(s)	478
Bse3DI	GCAATG	1 cut(s)	360
BseDI	CCNNGG	2 cut(s)	369, 495
BseGI	GGATG	3 cut(s)	160, 328, 514
BseMI	GCAATG	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	377
BseYI	CCCAGC	1 cut(s)	225
BsgI	GTGCAG	1 cut(s)	503
BshFI	GGCC	3 cut(s)	269, 494, 500
BsiSI	CCGG	1 cut(s)	479
BsmAI	GTCTC	1 cut(s)	480
BsmI	GAATGC	1 cut(s)	13
BsnI	GGCC	3 cut(s)	269, 494, 500
Bsp143I	GATC	2 cut(s)	23, 348
Bsp1720I	GCTNAGC	1 cut(s)	455
Bsp19I	CCATGG	1 cut(s)	369
BspANI	GGCC	3 cut(s)	269, 494, 500
BspPI	GGATC	1 cut(s)	31
BsrDI	GCAATG	1 cut(s)	360
BssECI	CCNNGG	2 cut(s)	369, 495
BssMI	GATC	2 cut(s)	23, 348
BssT1I	CCWWGG	2 cut(s)	369, 495
Bst4CI	ACNGT	2 cut(s)	68, 74
BstAPI	GCANNNNNTGC	1 cut(s)	284
BstC8I	GCNNGC	1 cut(s)	486
BstDEI	CTNAG	2 cut(s)	455, 516
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	3 cut(s)	160, 328, 514
BstKTI	GATC	2 cut(s)	26, 351
BstMAI	GTCTC	1 cut(s)	480
BstMBI	GATC	2 cut(s)	23, 348
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 284, 371
BstNSI	RCATGY	2 cut(s)	17, 38
BstV1I	GCAGC	1 cut(s)	377
BsuRI	GGCC	3 cut(s)	269, 494, 500
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	3 cut(s)	160, 328, 514
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	2 cut(s)	79, 540
Cac8I	GCNNGC	1 cut(s)	486
Cfr13I	GGNCC	1 cut(s)	268
CviAII	CATG	4 cut(s)	14, 35, 370, 446
CviJI	RGCY	9 cut(s)	229, 269, 317, 368, 374, 454, 494, 500, 515
CviKI_1	RGCY	9 cut(s)	229, 269, 317, 368, 374, 454, 494, 500, 515
DdeI	CTNAG	2 cut(s)	455, 516
DpnI	GATC	2 cut(s)	25, 350
DpnII	GATC	2 cut(s)	23, 348
DraIII	CACNNNGTG	1 cut(s)	236
Eco130I	CCWWGG	2 cut(s)	369, 495
EcoT14I	CCWWGG	2 cut(s)	369, 495
ErhI	CCWWGG	2 cut(s)	369, 495
FaeI	CATG	4 cut(s)	17, 38, 373, 449
FalI	AAGNNNNNCTT	2 cut(s)	426, 458
FatI	CATG	4 cut(s)	13, 34, 369, 445
FbaI	TGATCA	1 cut(s)	348
Fnu4HI	GCNGC	1 cut(s)	366
FokI	GGATG	3 cut(s)	167, 335, 521
Fsp4HI	GCNGC	1 cut(s)	366
GluI	GCNGC	1 cut(s)	366
GsaI	CCCAGC	1 cut(s)	229
HaeIII	GGCC	3 cut(s)	269, 494, 500
HapII	CCGG	1 cut(s)	479
Hin1II	CATG	4 cut(s)	17, 38, 373, 449
HinfI	GANTC	2 cut(s)	85, 356
HpaII	CCGG	1 cut(s)	479
HphI	GGTGA	2 cut(s)	343, 461
HpyAV	CCTTC	7 cut(s)	14, 35, 52, 231, 253, 380, 499
HpyCH4III	ACNGT	2 cut(s)	68, 74
HpyCH4IV	ACGT	2 cut(s)	104, 247
HpyCH4V	TGCA	7 cut(s)	11, 158, 209, 278, 365, 433, 484
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 284, 371
HpyF3I	CTNAG	2 cut(s)	455, 516
HpySE526I	ACGT	2 cut(s)	104, 247
Hsp92II	CATG	4 cut(s)	17, 38, 373, 449
Ksp22I	TGATCA	1 cut(s)	348
Kzo9I	GATC	2 cut(s)	23, 348
LmnI	GCTCC	3 cut(s)	292, 512, 530
LpnPI	CCDG	3 cut(s)	239, 470, 492
Lsp1109I	GCAGC	1 cut(s)	377
LweI	GCATC	2 cut(s)	145, 265
MaeII	ACGT	2 cut(s)	104, 247
MaeIII	GTNAC	2 cut(s)	68, 113
MalI	GATC	2 cut(s)	25, 350
MboI	GATC	2 cut(s)	23, 348
MboII	GAAGA	1 cut(s)	315
MluCI	AATT	3 cut(s)	174, 338, 546
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	1 cut(s)	520
MseI	TTAA	1 cut(s)	240
MspI	CCGG	1 cut(s)	479
Mva1269I	GAATGC	1 cut(s)	13
MwoI	GCNNNNNNNGC	3 cut(s)	275, 284, 371
NcoI	CCATGG	1 cut(s)	369
NdeII	GATC	2 cut(s)	23, 348
NlaIII	CATG	4 cut(s)	17, 38, 373, 449
NmuCI	GTSAC	1 cut(s)	113
NspI	RCATGY	2 cut(s)	17, 38
PciI	ACATGT	2 cut(s)	13, 34
PctI	GAATGC	1 cut(s)	13
PfeI	GAWTC	2 cut(s)	85, 356
PkrI	GCNGC	1 cut(s)	367
PscI	ACATGT	2 cut(s)	13, 34
PspFI	CCCAGC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	268
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	1 cut(s)	366
Sau3AI	GATC	2 cut(s)	23, 348
Sau96I	GGNCC	1 cut(s)	268
SetI	ASST	6 cut(s)	107, 250, 319, 391, 456, 517
SfaNI	GCATC	2 cut(s)	145, 265
Sse9I	AATT	3 cut(s)	174, 338, 546
StyI	CCWWGG	2 cut(s)	369, 495
TaaI	ACNGT	2 cut(s)	68, 74
TaiI	ACGT	2 cut(s)	107, 250
TaqI	TCGA	2 cut(s)	26, 301
TasI	AATT	3 cut(s)	174, 338, 546
TfiI	GAWTC	2 cut(s)	85, 356
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	2 cut(s)	79, 540
TseFI	GTSAC	1 cut(s)	113
TseI	GCWGC	1 cut(s)	365
Tsp45I	GTSAC	1 cut(s)	113
TspDTI	ATGAA	5 cut(s)	108, 195, 207, 434, 479
TspRI	CASTG	2 cut(s)	79, 540
XapI	RAATTY	1 cut(s)	338
XceI	RCATGY	2 cut(s)	17, 38
XcmI	CCANNNNNNNNNTGG	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.