FvH4_6g20010
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000883
Physical Location & Seq
Forward (+)
13438478 .. 13439578
1101 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20010.t1

Sequence Viewer

Length: 903 bp
ATGAGTTCTACATCAAATTCCCGAGGAAGAGGCCAAAATAAACGTTATTGGACAGATGAGGAAGACGACAAGCTGCTAGAGTCGCTTCTAGAGTTACACCATGACAAAAAGTGGAAAGCTGATACCGGATTTAAGAATTGTTATCTCAAACAACTACAACATGTGATGGAATCTAAGCTTCCAGGTTGTGGAATATTAGCAAACCCTCATATTGAATCAAGGATCAAGACACTAAAGACAAAATATGCTGCTTTAGCTGAGATGTTGAACCAAAGTGGTTTTAGCTGGAATGAGCAAGAAATGATGCTAGTGTGTGAAAAAAGTGTTTACATTGAATGGGTAGAGAAATATATATATGGTAGAGATCGTGCAAATGGAATGAATGTTGGAAATGCGGATGATGATGAAGAGGAAATTGCGCGTGAGAACACTAATGCTGATGATTTCAATTTAGATGATGACATTCTCTTTGGCAATGTCAACCCAATTGGTGATATGGGATCACACCATGGAGGAGTTGAGGATGTTGATGCTTCCGTTACACAACCAAGTGCCCCACAACAGATGCCTACACCAAGCGCTTCTTCCAATACTAGCCGTCGGAAAGGAAAAGCATTGGATGAAATGAGCAAGAACTTTGGTCTTATGGCAAAAGTTGTGGCTGGGATGGCACCTAAGCTTGATGGATTGGTCAACGTTCTATCCACAGACAAGGAGTTAACTGATCTCCAATCAAGACTTGATGGGGAGTTGAGCAAAATGGAATCCTTAACCCCGATTCAAGTGTTCCATGTCACAAATATTTTGGCACAGAAACATGATCTGCTCAGGGTATTCTTTACCATGAATGATGAAAGGAATGCATCATATGTGAGGAACCTACTCGAATTTGGCTTACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

301

Amino Acids

33.74

Weight (kDa)

5.12

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 16 - 109 1.8e-09 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 670
AccB7I CCANNNNNTGG 1 cut(s) 188
AccII CGCG 1 cut(s) 421
AciI CCGC 1 cut(s) 395
AclI AACGTT 2 cut(s) 43, 696
AclWI GGATC 2 cut(s) 230, 508
AcsI RAATTY 2 cut(s) 16, 887
AfeI AGCGCT 1 cut(s) 580
AfiI CCNNNNNNNGG 1 cut(s) 188
AflIII ACRYGT 1 cut(s) 160
AgsI TTSAA 5 cut(s) 215, 268, 335, 448, 782
AjnI CCWGG 1 cut(s) 181
AjuI GAANNNNNNNTTGG 2 cut(s) 568, 600
AluBI AGCT 6 cut(s) 73, 119, 178, 257, 285, 679
AluI AGCT 6 cut(s) 73, 119, 178, 257, 285, 679
AlwI GGATC 2 cut(s) 230, 508
Ama87I CYCGRG 1 cut(s) 21
Aor51HI AGCGCT 1 cut(s) 580
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 2 cut(s) 73, 248
ApoI RAATTY 2 cut(s) 16, 887
ArsI GACNNNNNNTTYG 2 cut(s) 452, 484
AspLEI GCGC 2 cut(s) 421, 581
AsuHPI GGTGA 1 cut(s) 503
AvaI CYCGRG 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 556
BanI GGYRCC 1 cut(s) 670
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 60, 235
BccI CCATC 4 cut(s) 160, 661, 677, 737
BceAI ACGGC 1 cut(s) 582
BciT130I CCWGG 1 cut(s) 183
BfaI CTAG 4 cut(s) 77, 89, 308, 594
BfoI RGCGCY 1 cut(s) 582
BisI GCNGC 2 cut(s) 74, 249
BlsI GCNGC 2 cut(s) 75, 250
Bme1390I CCNGG 1 cut(s) 183
BmeT110I CYCGRG 1 cut(s) 21
BmiI GGNNCC 2 cut(s) 672, 878
BmrFI CCNGG 1 cut(s) 183
BmsI GCATC 4 cut(s) 294, 520, 555, 872
BpiI GAAGAC 1 cut(s) 69
Bpu10I CCTNAGC 2 cut(s) 675, 827
BsaJI CCNNGG 2 cut(s) 22, 508
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 1 cut(s) 188
Bse3DI GCAATG 1 cut(s) 481
BseBI CCWGG 1 cut(s) 183
BseDI CCNNGG 2 cut(s) 22, 508
BseGI GGATG 4 cut(s) 403, 529, 625, 672
BseLI CCNNNNNNNGG 1 cut(s) 188
BseMI GCAATG 1 cut(s) 481
BseMII CTCAG 2 cut(s) 249, 841
BseRI GAGGAG 1 cut(s) 528
BseSI GKGCMC 1 cut(s) 556
BseXI GCAGC 2 cut(s) 60, 235
BseYI CCCAGC 1 cut(s) 662
Bsh1236I CGCG 1 cut(s) 421
BshFI GGCC 1 cut(s) 33
BshNI GGYRCC 1 cut(s) 670
BsiHKCI CYCGRG 1 cut(s) 21
BsiSI CCGG 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 188
BsmI GAATGC 1 cut(s) 865
BsnI GGCC 1 cut(s) 33
BsoBI CYCGRG 1 cut(s) 21
Bsp1286I GDGCHC 1 cut(s) 556
Bsp143I GATC 5 cut(s) 222, 364, 500, 724, 820
Bsp19I CCATGG 1 cut(s) 508
BspACI CCGC 1 cut(s) 395
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 2 cut(s) 250, 840
BspFNI CGCG 1 cut(s) 421
BspLI GGNNCC 2 cut(s) 672, 878
BspPI GGATC 2 cut(s) 230, 508
BspT107I GGYRCC 1 cut(s) 670
BsrDI GCAATG 1 cut(s) 481
BssECI CCNNGG 2 cut(s) 22, 508
BssMI GATC 5 cut(s) 222, 364, 500, 724, 820
BssT1I CCWWGG 1 cut(s) 508
Bst2UI CCWGG 1 cut(s) 183
Bst6I CTCTTC 2 cut(s) 22, 402
BstDEI CTNAG 4 cut(s) 174, 258, 675, 827
BstDSI CCRYGG 1 cut(s) 508
BstF5I GGATG 4 cut(s) 403, 529, 625, 672
BstFNI CGCG 1 cut(s) 421
BstH2I RGCGCY 1 cut(s) 582
BstHHI GCGC 2 cut(s) 421, 581
BstKTI GATC 5 cut(s) 225, 367, 503, 727, 823
BstMBI GATC 5 cut(s) 222, 364, 500, 724, 820
BstMWI GCNNNNNNNGC 3 cut(s) 82, 254, 668
BstNI CCWGG 1 cut(s) 183
BstNSI RCATGY 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 181
BstSLI GKGCMC 1 cut(s) 556
BstUI CGCG 1 cut(s) 421
BstV1I GCAGC 2 cut(s) 60, 235
BstV2I GAAGAC 1 cut(s) 69
BsuRI GGCC 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 508
BtsCI GGATG 4 cut(s) 403, 529, 625, 672
CfoI GCGC 2 cut(s) 421, 581
CspCI CAANNNNNGTGG 2 cut(s) 639, 674
CviAII CATG 7 cut(s) 101, 161, 509, 791, 818, 844, 900
DdeI CTNAG 4 cut(s) 174, 258, 675, 827
DpnI GATC 5 cut(s) 224, 366, 502, 726, 822
DpnII GATC 5 cut(s) 222, 364, 500, 724, 820
Eam1104I CTCTTC 2 cut(s) 22, 402
EarI CTCTTC 2 cut(s) 22, 402
Eco130I CCWWGG 1 cut(s) 508
Eco47III AGCGCT 1 cut(s) 580
Eco88I CYCGRG 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 181
EcoT14I CCWWGG 1 cut(s) 508
EcoT22I ATGCAT 1 cut(s) 865
ErhI CCWWGG 1 cut(s) 508
FaeI CATG 7 cut(s) 104, 164, 512, 794, 821, 847, 903
FalI AAGNNNNNCTT 2 cut(s) 568, 600
FatI CATG 7 cut(s) 100, 160, 508, 790, 817, 843, 899
FauNDI CATATG 1 cut(s) 868
Fnu4HI GCNGC 2 cut(s) 74, 249
FokI GGATG 4 cut(s) 410, 536, 632, 679
Fsp4HI GCNGC 2 cut(s) 74, 249
FspBI CTAG 4 cut(s) 77, 89, 308, 594
GlaI GCGC 2 cut(s) 420, 580
GluI GCNGC 2 cut(s) 74, 249
GsaI CCCAGC 1 cut(s) 666
HaeII RGCGCY 1 cut(s) 582
HaeIII GGCC 1 cut(s) 33
HapII CCGG 1 cut(s) 126
HhaI GCGC 2 cut(s) 421, 581
Hin1II CATG 7 cut(s) 104, 164, 512, 794, 821, 847, 903
Hin6I GCGC 2 cut(s) 419, 579
HinP1I GCGC 2 cut(s) 419, 579
HincII GTYRAC 3 cut(s) 481, 694, 720
HindII GTYRAC 3 cut(s) 481, 694, 720
HindIII AAGCTT 2 cut(s) 176, 677
HinfI GANTC 5 cut(s) 80, 170, 215, 764, 778
HpaI GTTAAC 1 cut(s) 720
HpaII CCGG 1 cut(s) 126
HphI GGTGA 1 cut(s) 503
Hpy166II GTNNAC 4 cut(s) 328, 481, 694, 720
Hpy188I TCNGA 1 cut(s) 603
Hpy188III TCNNGA 4 cut(s) 21, 89, 226, 735
Hpy8I GTNNAC 4 cut(s) 328, 481, 694, 720
Hpy99I CGWCG 1 cut(s) 603
HpyCH4IV ACGT 2 cut(s) 43, 696
HpyCH4V TGCA 2 cut(s) 371, 863
HpyF10VI GCNNNNNNNGC 3 cut(s) 82, 254, 668
HpyF3I CTNAG 4 cut(s) 174, 258, 675, 827
HpySE526I ACGT 2 cut(s) 43, 696
Hsp92II CATG 7 cut(s) 104, 164, 512, 794, 821, 847, 903
HspAI GCGC 2 cut(s) 419, 579
KspAI GTTAAC 1 cut(s) 720
Kzo9I GATC 5 cut(s) 222, 364, 500, 724, 820
LpnPI CCDG 6 cut(s) 139, 168, 195, 271, 648, 814
Lsp1109I GCAGC 2 cut(s) 60, 235
LweI GCATC 4 cut(s) 294, 520, 555, 872
MaeI CTAG 4 cut(s) 77, 89, 308, 594
MaeII ACGT 2 cut(s) 43, 696
MaeIII GTNAC 3 cut(s) 93, 538, 793
MalI GATC 5 cut(s) 224, 366, 502, 726, 822
MboI GATC 5 cut(s) 222, 364, 500, 724, 820
MboII GAAGA 4 cut(s) 39, 74, 419, 576
MfeI CAATTG 1 cut(s) 486
MhlI GDGCHC 1 cut(s) 556
MluCI AATT 6 cut(s) 16, 136, 414, 448, 486, 887
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 2 cut(s) 367, 581
MnlI CCTC 8 cut(s) 17, 23, 52, 216, 403, 506, 514, 867
Mph1103I ATGCAT 1 cut(s) 865
MseI TTAA 3 cut(s) 132, 719, 770
MspI CCGG 1 cut(s) 126
MspR9I CCNGG 1 cut(s) 183
MunI CAATTG 1 cut(s) 486
Mva1269I GAATGC 1 cut(s) 865
MvaI CCWGG 1 cut(s) 183
MvnI CGCG 1 cut(s) 421
MwoI GCNNNNNNNGC 3 cut(s) 82, 254, 668
NcoI CCATGG 1 cut(s) 508
NdeI CATATG 1 cut(s) 868
NdeII GATC 5 cut(s) 222, 364, 500, 724, 820
NlaIII CATG 7 cut(s) 104, 164, 512, 794, 821, 847, 903
NlaIV GGNNCC 2 cut(s) 672, 878
NmuCI GTSAC 1 cut(s) 793
NsiI ATGCAT 1 cut(s) 865
NspI RCATGY 1 cut(s) 164
PciI ACATGT 1 cut(s) 160
PctI GAATGC 1 cut(s) 865
PfeI GAWTC 4 cut(s) 170, 215, 764, 778
PflMI CCANNNNNTGG 1 cut(s) 188
PkrI GCNGC 2 cut(s) 75, 250
PleI GAGTC 1 cut(s) 88
PpsI GAGTC 1 cut(s) 88
PscI ACATGT 1 cut(s) 160
Psp1406I AACGTT 2 cut(s) 43, 696
Psp6I CCWGG 1 cut(s) 181
PspFI CCCAGC 1 cut(s) 662
PspGI CCWGG 1 cut(s) 181
PspN4I GGNNCC 2 cut(s) 672, 878
SaqAI TTAA 3 cut(s) 132, 719, 770
SatI GCNGC 2 cut(s) 74, 249
Sau3AI GATC 5 cut(s) 222, 364, 500, 724, 820
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 1 cut(s) 183
SduI GDGCHC 1 cut(s) 556
SfaNI GCATC 4 cut(s) 294, 520, 555, 872
Sse9I AATT 6 cut(s) 16, 136, 414, 448, 486, 887
SsiI CCGC 1 cut(s) 395
SspI AATATT 2 cut(s) 195, 802
SspMI CTAG 4 cut(s) 77, 89, 308, 594
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 508
TaiI ACGT 2 cut(s) 46, 699
TaqI TCGA 1 cut(s) 885
TasI AATT 6 cut(s) 16, 136, 414, 448, 486, 887
TfiI GAWTC 4 cut(s) 170, 215, 764, 778
Tru1I TTAA 3 cut(s) 132, 719, 770
Tru9I TTAA 3 cut(s) 132, 719, 770
TseFI GTSAC 1 cut(s) 793
TseI GCWGC 2 cut(s) 73, 248
Tsp45I GTSAC 1 cut(s) 793
TspDTI ATGAA 5 cut(s) 395, 420, 636, 860, 867
TspGWI ACGGA 1 cut(s) 526
Van91I CCANNNNNTGG 1 cut(s) 188
XapI RAATTY 2 cut(s) 16, 887
XbaI TCTAGA 1 cut(s) 88
XceI RCATGY 1 cut(s) 164
XspI CTAG 4 cut(s) 77, 89, 308, 594
Zsp2I ATGCAT 1 cut(s) 865
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.