Rroxscaffold_4G00326050
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000883
Physical Location & Seq
Forward (+)
58077299 .. 58079389
2091 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00326050.1

Sequence Viewer

Length: 819 bp
ATGGCTCGTCTAAGTTTGTCCACAAAGAAAAGACTACTTGTCACCATAAATGCATTGCTTGCTTACCTTCGAGTACTATTTGCTGTATGTGCTGCTGGTTATGCCTATGTCAACTTAGCTGTAAAGAAACACCGTCAACTAAGTCGACCATCAGCCATAAGAGTCTATAAACAAAACAAAAAGGATGCAAAAGGTTTGTATGGTAAACCATTTGAACATTATTATGTCCTTGGAGAGATATATGGAAAAGATCGTGCAATGGGAACAAATGCTGGAAATGCTGAAGATGATGAAGAAGAAGTTAGGGAAGAGGATGCAAGCATGAATCAAGAAGGTGTACGAGCTGATGACTTTTTTGAACAAATGAACATGACTACCGATGGTGGATCTCATTATAGGGGATCACAATTTGAAGGGCTTGGTGAAACGGAAGATGATGATATATCCTTTATACAACCAAGTCCCCCCAACCACCAAGTGCCAAGCAACGTGCCAAACAGCAGAGGTCAACTCAAGATAAAGGCAAGAGCTTTGGATGATATGGCTAAAAAATTTGGAGTGATCACCGAAGCCATTGCAGGAATGGCTCCAAAGTTTGAAGGCTTGATTAATGTTCTCTCAACAGATAAGGATCTTGCTAATATGCAAGGCAAACTTGGTGGTGAGCTGAGGAAAATGGATTTCCTATCTCCCTTGCAGGTATTTCACGTCACCAACAAATTAGCTAAAGAGCATGACTTGTTGAGGGTCTTCTTCACCATGACCGATGAGGAAAAGAAGGATTACATAATCAACCTTCTGCAATATGGCCTACGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

272

Amino Acids

30.58

Weight (kDa)

6.62

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 688
AccI GTMKAC 1 cut(s) 145
AclWI GGATC 3 cut(s) 394, 409, 639
AcsI RAATTY 1 cut(s) 551
AcuI CTGAAG 1 cut(s) 303
AdeI CACNNNGTG 1 cut(s) 478
AfaI GTAC 2 cut(s) 75, 339
AgsI TTSAA 4 cut(s) 215, 359, 413, 599
AhdI GACNNNNNGTC 1 cut(s) 38
AjiI CACGTC 1 cut(s) 709
AluBI AGCT 5 cut(s) 119, 344, 530, 667, 725
AluI AGCT 5 cut(s) 119, 344, 530, 667, 725
AlwI GGATC 3 cut(s) 394, 409, 639
AoxI GGCC 1 cut(s) 808
ApeKI GCWGC 1 cut(s) 92
ApoI RAATTY 1 cut(s) 551
AseI ATTAAT 1 cut(s) 609
AsuHPI GGTGA 6 cut(s) 34, 434, 556, 674, 703, 748
BbsI GAAGAC 1 cut(s) 742
BbvCI CCTCAGC 1 cut(s) 668
BbvI GCAGC 1 cut(s) 79
BccI CCATC 2 cut(s) 157, 374
BcgI CGANNNNNNTGC 2 cut(s) 557, 591
BclI TGATCA 1 cut(s) 561
BfuAI ACCTGC 1 cut(s) 688
BisI GCNGC 1 cut(s) 93
BlsI GCNGC 1 cut(s) 94
BmcAI AGTACT 1 cut(s) 75
BmeRI GACNNNNNGTC 1 cut(s) 38
BmgBI CACGTC 1 cut(s) 709
BmiI GGNNCC 1 cut(s) 588
BmsI GCATC 2 cut(s) 175, 304
BpiI GAAGAC 1 cut(s) 742
BplI GAGNNNNNCTC 2 cut(s) 495, 527
Bpu10I CCTNAGC 1 cut(s) 668
BpuEI CTTGAG 1 cut(s) 497
BsaBI GATNNNNATC 1 cut(s) 630
BsaJI CCNNGG 1 cut(s) 229
Bse3DI GCAATG 3 cut(s) 53, 264, 573
Bse8I GATNNNNATC 1 cut(s) 630
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 3 cut(s) 190, 319, 541
BseJI GATNNNNATC 1 cut(s) 630
BseMI GCAATG 3 cut(s) 53, 264, 573
BseMII CTCAG 1 cut(s) 659
BseXI GCAGC 1 cut(s) 79
BshFI GGCC 1 cut(s) 810
BslFI GGGAC 1 cut(s) 447
BsmFI GGGAC 1 cut(s) 447
BsnI GGCC 1 cut(s) 810
Bsp143I GATC 5 cut(s) 250, 386, 401, 561, 631
BspANI GGCC 1 cut(s) 810
BspCNI CTCAG 1 cut(s) 660
BspLI GGNNCC 1 cut(s) 588
BspMI ACCTGC 1 cut(s) 688
BspPI GGATC 3 cut(s) 394, 409, 639
BsrDI GCAATG 3 cut(s) 53, 264, 573
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 5 cut(s) 250, 386, 401, 561, 631
BssT1I CCWWGG 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 134
Bst6I CTCTTC 1 cut(s) 303
BstAPI GCANNNNNTGC 1 cut(s) 59
BstC8I GCNNGC 2 cut(s) 60, 319
BstDEI CTNAG 4 cut(s) 11, 115, 140, 668
BstF5I GGATG 3 cut(s) 190, 319, 541
BstKTI GATC 5 cut(s) 253, 389, 404, 564, 634
BstMBI GATC 5 cut(s) 250, 386, 401, 561, 631
BstMWI GCNNNNNNNGC 5 cut(s) 59, 89, 101, 278, 584
BstV1I GCAGC 1 cut(s) 79
BstV2I GAAGAC 1 cut(s) 742
BstX2I RGATCY 2 cut(s) 386, 631
BstYI RGATCY 2 cut(s) 386, 631
BsuRI GGCC 1 cut(s) 810
BtrI CACGTC 1 cut(s) 709
BtsCI GGATG 3 cut(s) 190, 319, 541
BveI ACCTGC 1 cut(s) 688
Cac8I GCNNGC 2 cut(s) 60, 319
Csp6I GTAC 2 cut(s) 74, 338
CspCI CAANNNNNGTGG 2 cut(s) 640, 675
CviAII CATG 4 cut(s) 322, 370, 734, 760
CviQI GTAC 2 cut(s) 74, 338
DdeI CTNAG 4 cut(s) 11, 115, 140, 668
DpnI GATC 5 cut(s) 252, 388, 403, 563, 633
DpnII GATC 5 cut(s) 250, 386, 401, 561, 631
DraIII CACNNNGTG 1 cut(s) 478
DriI GACNNNNNGTC 1 cut(s) 38
Eam1104I CTCTTC 1 cut(s) 303
Eam1105I GACNNNNNGTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 303
Eco130I CCWWGG 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 303
EcoT14I CCWWGG 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 55
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 4 cut(s) 325, 373, 737, 763
FalI AAGNNNNNCTT 2 cut(s) 639, 671
FaqI GGGAC 1 cut(s) 447
FatI CATG 4 cut(s) 321, 369, 733, 759
FbaI TGATCA 1 cut(s) 561
FblI GTMKAC 1 cut(s) 145
Fnu4HI GCNGC 1 cut(s) 93
FokI GGATG 3 cut(s) 197, 326, 548
Fsp4HI GCNGC 1 cut(s) 93
GluI GCNGC 1 cut(s) 93
HaeIII GGCC 1 cut(s) 810
Hin1II CATG 4 cut(s) 325, 373, 737, 763
HincII GTYRAC 4 cut(s) 112, 137, 146, 509
HindII GTYRAC 4 cut(s) 112, 137, 146, 509
HinfI GANTC 2 cut(s) 162, 325
HphI GGTGA 6 cut(s) 34, 434, 556, 674, 703, 748
Hpy166II GTNNAC 7 cut(s) 21, 112, 137, 146, 206, 338, 509
Hpy188III TCNNGA 2 cut(s) 329, 514
Hpy8I GTNNAC 7 cut(s) 21, 112, 137, 146, 206, 338, 509
HpyAV CCTTC 6 cut(s) 77, 326, 407, 593, 772, 806
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 3 cut(s) 489, 708, 814
HpyCH4V TGCA 8 cut(s) 53, 188, 257, 317, 578, 646, 697, 802
HpyF10VI GCNNNNNNNGC 5 cut(s) 59, 89, 101, 278, 584
HpyF3I CTNAG 4 cut(s) 11, 115, 140, 668
HpySE526I ACGT 3 cut(s) 489, 708, 814
Hsp92II CATG 4 cut(s) 325, 373, 737, 763
Ksp22I TGATCA 1 cut(s) 561
Kzo9I GATC 5 cut(s) 250, 386, 401, 561, 631
LmnI GCTCC 1 cut(s) 592
LpnPI CCDG 4 cut(s) 81, 258, 564, 683
Lsp1109I GCAGC 1 cut(s) 79
LweI GCATC 2 cut(s) 175, 304
MaeII ACGT 3 cut(s) 489, 708, 814
MaeIII GTNAC 2 cut(s) 40, 709
MalI GATC 5 cut(s) 252, 388, 403, 563, 633
MboI GATC 5 cut(s) 250, 386, 401, 561, 631
MboII GAAGA 7 cut(s) 296, 305, 308, 320, 443, 742, 745
MflI RGATCY 2 cut(s) 386, 631
MluCI AATT 3 cut(s) 407, 551, 719
MlyI GAGTC 1 cut(s) 171
MnlI CCTC 5 cut(s) 304, 497, 663, 738, 763
Mph1103I ATGCAT 1 cut(s) 55
MseI TTAA 1 cut(s) 609
MslI CAYNNNNRTG 1 cut(s) 222
MwoI GCNNNNNNNGC 5 cut(s) 59, 89, 101, 278, 584
NdeII GATC 5 cut(s) 250, 386, 401, 561, 631
NlaIII CATG 4 cut(s) 325, 373, 737, 763
NlaIV GGNNCC 1 cut(s) 588
NmuCI GTSAC 2 cut(s) 40, 709
NsiI ATGCAT 1 cut(s) 55
PfeI GAWTC 1 cut(s) 325
PkrI GCNGC 1 cut(s) 94
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PshBI ATTAAT 1 cut(s) 609
PspN4I GGNNCC 1 cut(s) 588
PsuI RGATCY 2 cut(s) 386, 631
RsaI GTAC 2 cut(s) 75, 339
RsaNI GTAC 2 cut(s) 74, 338
RseI CAYNNNNRTG 1 cut(s) 222
SalI GTCGAC 1 cut(s) 144
SaqAI TTAA 1 cut(s) 609
SatI GCNGC 1 cut(s) 93
Sau3AI GATC 5 cut(s) 250, 386, 401, 561, 631
ScaI AGTACT 1 cut(s) 75
SchI GAGTC 1 cut(s) 171
SfaNI GCATC 2 cut(s) 175, 304
SmiMI CAYNNNNRTG 1 cut(s) 222
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 3 cut(s) 407, 551, 719
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 3 cut(s) 492, 711, 817
TaqI TCGA 2 cut(s) 70, 145
TaqII GACCGA 1 cut(s) 779
TasI AATT 3 cut(s) 407, 551, 719
TatI WGTACW 1 cut(s) 73
TfiI GAWTC 1 cut(s) 325
Tru1I TTAA 1 cut(s) 609
Tru9I TTAA 1 cut(s) 609
TseFI GTSAC 2 cut(s) 40, 709
TseI GCWGC 1 cut(s) 92
Tsp45I GTSAC 2 cut(s) 40, 709
TspDTI ATGAA 3 cut(s) 306, 338, 380
TspGWI ACGGA 1 cut(s) 443
VspI ATTAAT 1 cut(s) 609
XapI RAATTY 1 cut(s) 551
XcmI CCANNNNNNNNNTGG 1 cut(s) 580
XmiI GTMKAC 1 cut(s) 145
ZrmI AGTACT 1 cut(s) 75
Zsp2I ATGCAT 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.