Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000883

Physical Location & Seq

Genomic Coordinates Reverse (-)

15684146 .. 15686984

Gene Structure 2839 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G015550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGCTGCAATTTTGGCTGAGCACGAGAGAAGATAGAGAAGCAGCAAAGCAAGGGAATCAACCTTTTTCCCTCAAGAATTATTGTAGGATGATTTCCAATTCAACTACAAAACAAAGAGGAAGGGGCCAGAATAAGCGTTTCTGGACAACCAAGGAGGATTCTGTATTAGTCGAATCTTTGCAAGAATTGTATCACGACACCAAATGGCGATCTGAAAATGGATTCAAAAATGGTTACTTGACCCAGATAGAGGCTATGATGGAAGCCAAAATGCCGGGTTGTGGAATACAGGCCTCTCCCCATATCGAATCACGAGTTAAAACTTTGAAGAAAAAGTATCATGCCTTGGCGGAGATGTTATCTCAAAGTAAGTTTGGTTGGAATGACAATGAAATGATGTTGGTTTGTGAAAGAAGGGTATATGATGAATGGGTCCAGAAAAGAAAGTATGCAAGTGGATTGTATAGTAAGCCATTTCCATACTACTATATGTTGGGGGAGATATATGGAAAAGCTCGTGAAGTTGGTGCATATATTGATAATGCTGATGATGACCAAGAGGAATTTGGACAGGAGGATGAGGATGCAAACATTGATCAAATTCTAGGCATGAACGATGATGCTGCTGCTGGAAATCTGAATCTGAATGTTGATATGAATGTGGAATCACAATCTGAGGGGTCAGAAGAGTTTGACGTATCATACACACTTGGTACCCCAAGTGCCCAACAAAGAAGACCTACAGAAAGTGCCCCAAGTGTTTCAGATCATGGTCGTAGGGTGAAAGCAAAGGTTATGGAGGAGATGAGTAAGAATGTAAGCACAATGTCATCTAAGATTGATGCTCTTGTTAATATTTTTTCAATTGATAAGGAATTGGCTGAATTGCAAGCGAAACTTGATAGTGAGTTGAACAAGATTGACGGCCTTACAGAATTTCAAGTCTTTCGAGCCACAAACATTTTAGCTCGTCAACATGACCTGCTGAGAGTGTTCTTCGGCATGTCCGAGGAAAGGAAACAGACATATGTTACATATCTGTTGGAACATGGCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

352

Amino Acids

40.45

Weight (kDa)

5.32

Isoelectric Point (pI)

59.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	48 - 143	2.6e-10	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000883)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08720 FvH4_3g22621 FvH4_4g11702 FvH4_5g01520 FvH4_5g01520 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g36380 FvH4_6g01730 FvH4_6g09170 FvH4_6g20010 FvH4_6g28113
malus_domestica	MD06G1073100.v1.1
prunus_persica	Prupe.2G067700_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.7G013000_v2.0.a1
pyrus_communis	pycom01g10330 pycom06g07250
rosa_chinensis	RchiOBHm_Chr7g0199161 RchiOBHm_Chr7g0199171
rosa_laevigata	RLG00000003809 RLG00000014802
rosa_multiflora	Rmu_sc0004791.1_g000001 Rmu_sc0006115.1_g000003 Rmu_sc0037059.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015450 Rroxscaffold_1G00015460 Rroxscaffold_3G00256990 Rroxscaffold_3G00257000 Rroxscaffold_4G00326050 Rroxscaffold_7G00182010
rosa_rugosa	Rorug03G0005500 Rorug03G0273000 Rorug05G0372800 Rorug05G0372900 Rorug07G0053100
rosa_samantha	Rh1BG202800 Rh1DG102500 Rh3AG101900 Rh3AG320900 Rh3CG107700 Rh3DG355100 Rh7AG176700 Rh7AG176800 Rh7AG365300 Rh7BG180300 Rh7CG185900 Rh7CG186000 Rh7CG384200 Rh7DG179700 Rh7DG179800
rosa_wichuraiana	Rw1G014270 Rw3G028010 Rw7G015540 Rw7G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	990
Acc65I	GGTACC	1 cut(s)	713
AccB1I	GGYRCC	1 cut(s)	713
AciI	CCGC	1 cut(s)	350
AcsI	RAATTY	3 cut(s)	563, 600, 935
AfaI	GTAC	1 cut(s)	715
AfiI	CCNNNNNNNGG	3 cut(s)	250, 281, 1014
AgsI	TTSAA	6 cut(s)	102, 226, 328, 864, 913, 941
AluBI	AGCT	2 cut(s)	515, 968
AluI	AGCT	2 cut(s)	515, 968
Alw21I	GWGCWC	1 cut(s)	23
AoxI	GGCC	3 cut(s)	124, 291, 925
ApeKI	GCWGC	4 cut(s)	4, 41, 623, 626
ApoI	RAATTY	3 cut(s)	563, 600, 935
Asp718I	GGTACC	1 cut(s)	713
AspS9I	GGNCC	2 cut(s)	124, 433
AsuC2I	CCSGG	1 cut(s)	276
AsuHPI	GGTGA	1 cut(s)	793
AvaII	GGWCC	1 cut(s)	433
BaeGI	GKGCMC	2 cut(s)	727, 754
BanI	GGYRCC	1 cut(s)	713
BauI	CACGAG	3 cut(s)	22, 312, 516
BbsI	GAAGAC	1 cut(s)	742
Bbv12I	GWGCWC	1 cut(s)	23
BbvI	GCAGC	3 cut(s)	53, 610, 613
BccI	CCATC	1 cut(s)	253
BceAI	ACGGC	1 cut(s)	940
BcgI	CGANNNNNNTGC	2 cut(s)	605, 639
BclI	TGATCA	1 cut(s)	595
BcnI	CCSGG	1 cut(s)	276
BfaI	CTAG	1 cut(s)	605
BfmI	CTRYAG	1 cut(s)	741
BfuAI	ACCTGC	1 cut(s)	990
BisI	GCNGC	4 cut(s)	5, 42, 624, 627
BlpI	GCTNAGC	1 cut(s)	17
BlsI	GCNGC	4 cut(s)	6, 43, 625, 628
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	1 cut(s)	433
BmgT120I	GGNCC	2 cut(s)	124, 433
BmiI	GGNNCC	3 cut(s)	125, 434, 715
BmrFI	CCNGG	1 cut(s)	276
BmsI	GCATC	3 cut(s)	574, 610, 832
BpiI	GAAGAC	1 cut(s)	742
Bpu1102I	GCTNAGC	1 cut(s)	17
BpuEI	CTTGAG	1 cut(s)	56
BpuMI	CCSGG	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	150, 345, 1008
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 281, 1014
BseDI	CCNNGG	3 cut(s)	150, 345, 1008
BseGI	GGATG	3 cut(s)	93, 583, 589
BseLI	CCNNNNNNNGG	3 cut(s)	250, 281, 1014
BseMII	CTCAG	3 cut(s)	8, 666, 977
BseRI	GAGGAG	1 cut(s)	815
BseSI	GKGCMC	2 cut(s)	727, 754
BseXI	GCAGC	3 cut(s)	53, 610, 613
BshFI	GGCC	3 cut(s)	126, 293, 927
BshNI	GGYRCC	1 cut(s)	713
BsiHKAI	GWGCWC	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	275
BslI	CCNNNNNNNGG	3 cut(s)	250, 281, 1014
BsnI	GGCC	3 cut(s)	126, 293, 927
Bsp1286I	GDGCHC	3 cut(s)	23, 727, 754
Bsp143I	GATC	3 cut(s)	209, 595, 766
Bsp1720I	GCTNAGC	1 cut(s)	17
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	3 cut(s)	126, 293, 927
BspCNI	CTCAG	3 cut(s)	9, 667, 978
BspLI	GGNNCC	3 cut(s)	125, 434, 715
BspMI	ACCTGC	1 cut(s)	990
BspT107I	GGYRCC	1 cut(s)	713
BssECI	CCNNGG	3 cut(s)	150, 345, 1008
BssMI	GATC	3 cut(s)	209, 595, 766
BssSI	CACGAG	3 cut(s)	22, 312, 516
BssT1I	CCWWGG	2 cut(s)	150, 345
Bst2BI	CACGAG	3 cut(s)	22, 312, 516
Bst6I	CTCTTC	1 cut(s)	681
BstC8I	GCNNGC	1 cut(s)	891
BstDEI	CTNAG	4 cut(s)	17, 675, 834, 986
BstF5I	GGATG	3 cut(s)	93, 583, 589
BstKTI	GATC	3 cut(s)	212, 598, 769
BstMBI	GATC	3 cut(s)	209, 595, 766
BstMWI	GCNNNNNNNGC	1 cut(s)	13
BstNSI	RCATGY	1 cut(s)	1006
BstSCI	CCNGG	1 cut(s)	274
BstSFI	CTRYAG	1 cut(s)	741
BstSLI	GKGCMC	2 cut(s)	727, 754
BstV1I	GCAGC	3 cut(s)	53, 610, 613
BstV2I	GAAGAC	1 cut(s)	742
BsuRI	GGCC	3 cut(s)	126, 293, 927
BtsCI	GGATG	3 cut(s)	93, 583, 589
BveI	ACCTGC	1 cut(s)	990
Cac8I	GCNNGC	1 cut(s)	891
Cfr13I	GGNCC	2 cut(s)	124, 433
Csp6I	GTAC	1 cut(s)	714
CviAII	CATG	6 cut(s)	341, 610, 770, 977, 1003, 1049
CviQI	GTAC	1 cut(s)	714
DdeI	CTNAG	4 cut(s)	17, 675, 834, 986
DpnI	GATC	3 cut(s)	211, 597, 768
DpnII	GATC	3 cut(s)	209, 595, 766
Eam1104I	CTCTTC	1 cut(s)	681
EarI	CTCTTC	1 cut(s)	681
EciI	GGCGGA	1 cut(s)	365
Eco130I	CCWWGG	2 cut(s)	150, 345
Eco147I	AGGCCT	1 cut(s)	293
Eco47I	GGWCC	1 cut(s)	433
EcoT14I	CCWWGG	2 cut(s)	150, 345
ErhI	CCWWGG	2 cut(s)	150, 345
FaeI	CATG	6 cut(s)	344, 613, 773, 980, 1006, 1052
FalI	AAGNNNNNCTT	2 cut(s)	882, 914
FatI	CATG	6 cut(s)	340, 609, 769, 976, 1002, 1048
FauNDI	CATATG	1 cut(s)	1027
FbaI	TGATCA	1 cut(s)	595
Fnu4HI	GCNGC	4 cut(s)	5, 42, 624, 627
FokI	GGATG	3 cut(s)	100, 590, 596
Fsp4HI	GCNGC	4 cut(s)	5, 42, 624, 627
FspBI	CTAG	1 cut(s)	605
GluI	GCNGC	4 cut(s)	5, 42, 624, 627
HaeIII	GGCC	3 cut(s)	126, 293, 927
HapII	CCGG	1 cut(s)	275
Hin1II	CATG	6 cut(s)	344, 613, 773, 980, 1006, 1052
HincII	GTYRAC	1 cut(s)	974
HindII	GTYRAC	1 cut(s)	974
HinfI	GANTC	7 cut(s)	55, 158, 173, 222, 308, 640, 665
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	793
Hpy166II	GTNNAC	1 cut(s)	974
Hpy188I	TCNGA	7 cut(s)	214, 639, 645, 676, 685, 766, 1009
Hpy188III	TCNNGA	6 cut(s)	73, 142, 194, 312, 436, 518
Hpy8I	GTNNAC	1 cut(s)	974
HpyAV	CCTTC	2 cut(s)	114, 408
HpyCH4IV	ACGT	1 cut(s)	696
HpyCH4V	TGCA	6 cut(s)	7, 181, 452, 530, 587, 889
HpyF10VI	GCNNNNNNNGC	1 cut(s)	13
HpyF3I	CTNAG	4 cut(s)	17, 675, 834, 986
HpySE526I	ACGT	1 cut(s)	696
Hsp92II	CATG	6 cut(s)	344, 613, 773, 980, 1006, 1052
KpnI	GGTACC	1 cut(s)	717
Ksp22I	TGATCA	1 cut(s)	595
Kzo9I	GATC	3 cut(s)	209, 595, 766
LpnPI	CCDG	9 cut(s)	127, 140, 257, 275, 288, 449, 557, 615, 995
Lsp1109I	GCAGC	3 cut(s)	53, 610, 613
LweI	GCATC	3 cut(s)	574, 610, 832
MaeI	CTAG	1 cut(s)	605
MaeII	ACGT	1 cut(s)	696
MaeIII	GTNAC	2 cut(s)	233, 1030
MalI	GATC	3 cut(s)	211, 597, 768
MboI	GATC	3 cut(s)	209, 595, 766
MboII	GAAGA	5 cut(s)	41, 340, 698, 747, 988
MfeI	CAATTG	1 cut(s)	864
MhlI	GDGCHC	3 cut(s)	23, 727, 754
MmeI	TCCRAC	2 cut(s)	359, 1023
MseI	TTAA	2 cut(s)	318, 852
MspI	CCGG	1 cut(s)	275
MspR9I	CCNGG	1 cut(s)	276
MunI	CAATTG	1 cut(s)	864
MwoI	GCNNNNNNNGC	1 cut(s)	13
NciI	CCSGG	1 cut(s)	276
NdeI	CATATG	1 cut(s)	1027
NdeII	GATC	3 cut(s)	209, 595, 766
NlaIII	CATG	6 cut(s)	344, 613, 773, 980, 1006, 1052
NlaIV	GGNNCC	3 cut(s)	125, 434, 715
NspI	RCATGY	1 cut(s)	1006
PceI	AGGCCT	1 cut(s)	293
PcsI	WCGNNNNNNNCGW	1 cut(s)	1005
PfeI	GAWTC	7 cut(s)	55, 158, 173, 222, 308, 640, 665
PkrI	GCNGC	4 cut(s)	6, 43, 625, 628
PspN4I	GGNNCC	3 cut(s)	125, 434, 715
PspPI	GGNCC	2 cut(s)	124, 433
RsaI	GTAC	1 cut(s)	715
RsaNI	GTAC	1 cut(s)	714
SaqAI	TTAA	2 cut(s)	318, 852
SatI	GCNGC	4 cut(s)	5, 42, 624, 627
Sau3AI	GATC	3 cut(s)	209, 595, 766
Sau96I	GGNCC	2 cut(s)	124, 433
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	3 cut(s)	23, 727, 754
SetI	ASST	7 cut(s)	64, 517, 699, 742, 795, 970, 984
SfaNI	GCATC	3 cut(s)	574, 610, 832
SfcI	CTRYAG	1 cut(s)	741
SinI	GGWCC	1 cut(s)	433
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
SseBI	AGGCCT	1 cut(s)	293
SsiI	CCGC	1 cut(s)	350
SspI	AATATT	1 cut(s)	856
SspMI	CTAG	1 cut(s)	605
StuI	AGGCCT	1 cut(s)	293
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	2 cut(s)	150, 345
TaiI	ACGT	1 cut(s)	699
TaqI	TCGA	3 cut(s)	171, 306, 949
TfiI	GAWTC	7 cut(s)	55, 158, 173, 222, 308, 640, 665
Tru1I	TTAA	2 cut(s)	318, 852
Tru9I	TTAA	2 cut(s)	318, 852
TseI	GCWGC	4 cut(s)	4, 41, 623, 626
TspDTI	ATGAA	4 cut(s)	405, 441, 626, 671
VpaK11BI	GGWCC	1 cut(s)	433
XapI	RAATTY	3 cut(s)	563, 600, 935
XceI	RCATGY	1 cut(s)	1006
XcmI	CCANNNNNNNNNTGG	1 cut(s)	563
XspI	CTAG	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.