FvH4_5g36380
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000883
Physical Location & Seq
Reverse (-)
26697112 .. 26698473
1362 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g36380.t1

Sequence Viewer

Length: 909 bp
ATGATGAGTTCTACATCAAATTCCCGAGGAAGAGGCCAAAATAAACGTTACTGGACAGACGAGGAAAACGACAAGCTGCTAGAGTCGCTTCTAGAGTTACACCATGACAAAAAGTGGAAAGCTGATACCGGATTTAAGAATGGTTTTCTTAAACAACTACAACATGTGATGGAATCTAAGCTTCCAGGTTGTGGAATATTAGCAAACCCGCATATTAAATCAAGGATCAAGACACTAAAGACAAAGTATGTTGCTGTAGCTGAGATGTTGAACCAAAGTGGTTTTAGCTGGAATGAGCAAGAAATGATGCTAGTGTGTGAGAAAAGTGTTTACATTAAATGGGTAGAGAAAAGAAATAAAGATGTTGCTGGATTATACGGTAAGCCGTTTCGGCATTATTATATTCTTGGAGAAATTTATGGTAGAGATCGTGCAAATGGAATGAATGTTAGAAATGCGGATGATGATGAAGAGGAAATTGCGCGTGAGAACACTAATGCTGATGATTTCAATTTAGATGATGACATTCTCTTTGGCAATGTCAACCCAATTGGTGATATGGGATCACAACATGGAGGATTTGAGGATGTTGATGCTTCCTTTACACAACCAAGTGCCCCACAACAGATGCCTACACAAAGCGCTTCTTCCAATACTAGCCGTCGGAAAGGAAAAGCATTGGATGAAATGAGCAAGAACTTTGGTCTTATGGCAAAAGCTGTAGCTGGGATGGCACCTAAGATTGATGGATTGGTCAACGTTCTATCCACAGACAAGGAGTTAACTGATCTCCAATCAAGACTTGATGGGGAGTTGAGCAAAATGGAATCCCTAACCCTGATTCAAGTGTTCCATGTCACAAATTTTTGGCACAGAAACATGATCTGCTCAGGGTATTCTTTACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

303

Amino Acids

34.13

Weight (kDa)

6.09

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-bind_3 PF12776 17 - 110 7.9e-10 Myb/SANT-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 733
AccB7I CCANNNNNTGG 1 cut(s) 191
AccII CGCG 1 cut(s) 484
AciI CCGC 2 cut(s) 209, 458
AclI AACGTT 2 cut(s) 46, 759
AclWI GGATC 2 cut(s) 233, 571
AcsI RAATTY 3 cut(s) 19, 414, 862
AfeI AGCGCT 1 cut(s) 643
AfiI CCNNNNNNNGG 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 163
AgsI TTSAA 3 cut(s) 271, 511, 845
AjnI CCWGG 1 cut(s) 184
AluBI AGCT 7 cut(s) 76, 122, 181, 260, 288, 719, 725
AluI AGCT 7 cut(s) 76, 122, 181, 260, 288, 719, 725
AlwI GGATC 2 cut(s) 233, 571
Ama87I CYCGRG 1 cut(s) 24
Aor51HI AGCGCT 1 cut(s) 643
AoxI GGCC 1 cut(s) 34
ApeKI GCWGC 1 cut(s) 76
ApoI RAATTY 3 cut(s) 19, 414, 862
ArsI GACNNNNNNTTYG 2 cut(s) 515, 547
AspLEI GCGC 2 cut(s) 484, 644
AsuHPI GGTGA 1 cut(s) 566
AvaI CYCGRG 1 cut(s) 24
BaeGI GKGCMC 1 cut(s) 619
BanI GGYRCC 1 cut(s) 733
BbvI GCAGC 1 cut(s) 63
BccI CCATC 4 cut(s) 163, 724, 740, 800
BceAI ACGGC 2 cut(s) 370, 645
BciT130I CCWGG 1 cut(s) 186
BfaI CTAG 4 cut(s) 80, 92, 311, 657
BfmI CTRYAG 2 cut(s) 255, 720
BfoI RGCGCY 1 cut(s) 645
BglI GCCNNNNNGGC 1 cut(s) 391
BisI GCNGC 1 cut(s) 77
BlsI GCNGC 1 cut(s) 78
Bme1390I CCNGG 1 cut(s) 186
BmeT110I CYCGRG 1 cut(s) 24
BmiI GGNNCC 1 cut(s) 735
BmrFI CCNGG 1 cut(s) 186
BmsI GCATC 3 cut(s) 297, 583, 618
Bpu10I CCTNAGC 1 cut(s) 889
BsaJI CCNNGG 1 cut(s) 25
BsaWI WCCGGW 1 cut(s) 128
Bsc4I CCNNNNNNNGG 1 cut(s) 191
Bse1I ACTGG 1 cut(s) 56
Bse3DI GCAATG 1 cut(s) 544
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 1 cut(s) 25
BseGI GGATG 4 cut(s) 466, 592, 688, 735
BseLI CCNNNNNNNGG 1 cut(s) 191
BseMI GCAATG 1 cut(s) 544
BseMII CTCAG 2 cut(s) 252, 903
BseNI ACTGG 1 cut(s) 56
BseSI GKGCMC 1 cut(s) 619
BseXI GCAGC 1 cut(s) 63
BseYI CCCAGC 1 cut(s) 725
Bsh1236I CGCG 1 cut(s) 484
BshFI GGCC 1 cut(s) 36
BshNI GGYRCC 1 cut(s) 733
BsiHKCI CYCGRG 1 cut(s) 24
BsiSI CCGG 1 cut(s) 129
BslI CCNNNNNNNGG 1 cut(s) 191
BsnI GGCC 1 cut(s) 36
BsoBI CYCGRG 1 cut(s) 24
Bsp1286I GDGCHC 1 cut(s) 619
Bsp143I GATC 5 cut(s) 225, 427, 563, 787, 882
BspACI CCGC 2 cut(s) 209, 458
BspANI GGCC 1 cut(s) 36
BspCNI CTCAG 2 cut(s) 253, 902
BspFNI CGCG 1 cut(s) 484
BspLI GGNNCC 1 cut(s) 735
BspPI GGATC 2 cut(s) 233, 571
BspT107I GGYRCC 1 cut(s) 733
BsrDI GCAATG 1 cut(s) 544
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 1 cut(s) 25
BssMI GATC 5 cut(s) 225, 427, 563, 787, 882
Bst2UI CCWGG 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 380
Bst6I CTCTTC 2 cut(s) 25, 465
BstDEI CTNAG 4 cut(s) 177, 261, 738, 889
BstF5I GGATG 4 cut(s) 466, 592, 688, 735
BstFNI CGCG 1 cut(s) 484
BstH2I RGCGCY 1 cut(s) 645
BstHHI GCGC 2 cut(s) 484, 644
BstKTI GATC 5 cut(s) 228, 430, 566, 790, 885
BstMBI GATC 5 cut(s) 225, 427, 563, 787, 882
BstMWI GCNNNNNNNGC 3 cut(s) 85, 391, 731
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 184
BstSFI CTRYAG 2 cut(s) 255, 720
BstSLI GKGCMC 1 cut(s) 619
BstUI CGCG 1 cut(s) 484
BstV1I GCAGC 1 cut(s) 63
BsuRI GGCC 1 cut(s) 36
BtsCI GGATG 4 cut(s) 466, 592, 688, 735
CfoI GCGC 2 cut(s) 484, 644
CviAII CATG 6 cut(s) 104, 164, 572, 854, 880, 906
DdeI CTNAG 4 cut(s) 177, 261, 738, 889
DpnI GATC 5 cut(s) 227, 429, 565, 789, 884
DpnII GATC 5 cut(s) 225, 427, 563, 787, 882
Eam1104I CTCTTC 2 cut(s) 25, 465
EarI CTCTTC 2 cut(s) 25, 465
Eco47III AGCGCT 1 cut(s) 643
Eco88I CYCGRG 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 184
FaeI CATG 6 cut(s) 107, 167, 575, 857, 883, 909
FalI AAGNNNNNCTT 2 cut(s) 631, 663
FatI CATG 6 cut(s) 103, 163, 571, 853, 879, 905
FauI CCCGC 1 cut(s) 216
Fnu4HI GCNGC 1 cut(s) 77
FokI GGATG 4 cut(s) 473, 599, 695, 742
Fsp4HI GCNGC 1 cut(s) 77
FspBI CTAG 4 cut(s) 80, 92, 311, 657
GlaI GCGC 2 cut(s) 483, 643
GluI GCNGC 1 cut(s) 77
GsaI CCCAGC 1 cut(s) 729
HaeII RGCGCY 1 cut(s) 645
HaeIII GGCC 1 cut(s) 36
HapII CCGG 1 cut(s) 129
HhaI GCGC 2 cut(s) 484, 644
Hin1II CATG 6 cut(s) 107, 167, 575, 857, 883, 909
Hin6I GCGC 2 cut(s) 482, 642
HinP1I GCGC 2 cut(s) 482, 642
HincII GTYRAC 3 cut(s) 544, 757, 783
HindII GTYRAC 3 cut(s) 544, 757, 783
HindIII AAGCTT 1 cut(s) 179
HinfI GANTC 4 cut(s) 83, 173, 827, 841
HpaI GTTAAC 1 cut(s) 783
HpaII CCGG 1 cut(s) 129
HphI GGTGA 1 cut(s) 566
Hpy166II GTNNAC 4 cut(s) 331, 544, 757, 783
Hpy188I TCNGA 1 cut(s) 666
Hpy188III TCNNGA 4 cut(s) 24, 92, 229, 798
Hpy8I GTNNAC 4 cut(s) 331, 544, 757, 783
Hpy99I CGWCG 1 cut(s) 666
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4IV ACGT 2 cut(s) 46, 759
HpyCH4V TGCA 1 cut(s) 434
HpyF10VI GCNNNNNNNGC 3 cut(s) 85, 391, 731
HpyF3I CTNAG 4 cut(s) 177, 261, 738, 889
HpySE526I ACGT 2 cut(s) 46, 759
Hsp92II CATG 6 cut(s) 107, 167, 575, 857, 883, 909
HspAI GCGC 2 cut(s) 482, 642
KspAI GTTAAC 1 cut(s) 783
Kzo9I GATC 5 cut(s) 225, 427, 563, 787, 882
LpnPI CCDG 9 cut(s) 37, 142, 171, 198, 274, 354, 711, 851, 876
Lsp1109I GCAGC 1 cut(s) 63
LweI GCATC 3 cut(s) 297, 583, 618
MaeI CTAG 4 cut(s) 80, 92, 311, 657
MaeII ACGT 2 cut(s) 46, 759
MaeIII GTNAC 3 cut(s) 47, 96, 856
MalI GATC 5 cut(s) 227, 429, 565, 789, 884
MboI GATC 5 cut(s) 225, 427, 563, 787, 882
MboII GAAGA 3 cut(s) 42, 482, 639
MfeI CAATTG 1 cut(s) 549
MhlI GDGCHC 1 cut(s) 619
MluCI AATT 6 cut(s) 19, 414, 477, 511, 549, 862
MlyI GAGTC 1 cut(s) 92
MmeI TCCRAC 1 cut(s) 644
MnlI CCTC 6 cut(s) 20, 26, 55, 466, 569, 577
MseI TTAA 5 cut(s) 135, 150, 216, 336, 782
MspI CCGG 1 cut(s) 129
MspR9I CCNGG 1 cut(s) 186
MunI CAATTG 1 cut(s) 549
MvaI CCWGG 1 cut(s) 186
MvnI CGCG 1 cut(s) 484
MwoI GCNNNNNNNGC 3 cut(s) 85, 391, 731
NdeII GATC 5 cut(s) 225, 427, 563, 787, 882
NlaIII CATG 6 cut(s) 107, 167, 575, 857, 883, 909
NlaIV GGNNCC 1 cut(s) 735
NmuCI GTSAC 1 cut(s) 856
NspI RCATGY 1 cut(s) 167
PciI ACATGT 1 cut(s) 163
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 3 cut(s) 173, 827, 841
PflMI CCANNNNNTGG 1 cut(s) 191
PkrI GCNGC 1 cut(s) 78
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PscI ACATGT 1 cut(s) 163
Psp1406I AACGTT 2 cut(s) 46, 759
Psp6I CCWGG 1 cut(s) 184
PspFI CCCAGC 1 cut(s) 725
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 1 cut(s) 735
SaqAI TTAA 5 cut(s) 135, 150, 216, 336, 782
SatI GCNGC 1 cut(s) 77
Sau3AI GATC 5 cut(s) 225, 427, 563, 787, 882
SchI GAGTC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 186
SduI GDGCHC 1 cut(s) 619
SfaNI GCATC 3 cut(s) 297, 583, 618
SfcI CTRYAG 2 cut(s) 255, 720
Sse9I AATT 6 cut(s) 19, 414, 477, 511, 549, 862
SsiI CCGC 2 cut(s) 209, 458
SspI AATATT 1 cut(s) 198
SspMI CTAG 4 cut(s) 80, 92, 311, 657
StyD4I CCNGG 1 cut(s) 184
TaaI ACNGT 1 cut(s) 380
TaiI ACGT 2 cut(s) 49, 762
TasI AATT 6 cut(s) 19, 414, 477, 511, 549, 862
TfiI GAWTC 3 cut(s) 173, 827, 841
Tru1I TTAA 5 cut(s) 135, 150, 216, 336, 782
Tru9I TTAA 5 cut(s) 135, 150, 216, 336, 782
TseFI GTSAC 1 cut(s) 856
TseI GCWGC 1 cut(s) 76
Tsp45I GTSAC 1 cut(s) 856
TspDTI ATGAA 3 cut(s) 458, 483, 699
Van91I CCANNNNNTGG 1 cut(s) 191
XapI RAATTY 3 cut(s) 19, 414, 862
XbaI TCTAGA 1 cut(s) 91
XceI RCATGY 1 cut(s) 167
XspI CTAG 4 cut(s) 80, 92, 311, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.