Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000883

Physical Location & Seq

Genomic Coordinates Reverse (-)

15520436 .. 15523351

Gene Structure 2916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG176800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGATTTCCAATTCAACTACAAAACAAAGAGGAAGGGGCCAGAATAAGCGTTTCTGGACAACCAAGGAGGATTCTGTATTAGTCGAATGTTTGCAAGAATTGTATCACGACACCAAATGGCGATCTGAAAATGGATTCAAAAATGGTTACTTGACCCAGATAGAGGCTATGATGGATGCCAAAATGCCGGGTTGTGGAATACAGGCCTCTCCCCATATCGAATCGCGAGTTAAAACTTTGAAGAAAAAGTATCATGCCTTGGCGGAGATGTTATCTCAAAGTAAGTTTGGTTGGAATGACGATGAAATGATGTTGGTTTGTGAAAGAAGGGTATATGATGAATGGGTCCAGAAAAGAAAGTATGCAAGTGGATTGTATAGTAAGCCATTTCCATACTACTATATGTTGGGGGAGATATATGGAAAAGCTCGTGAAGTTGGTGCATATATTGATAATGCTGATGATGACCAAGAGGAATTTGGACAGGAGGATGAGGATGCAAACATTGATCAAATTCTAGGCGTGAATGATGATGATGCTGCTGGAAATCTGAATCTGAATGTTGATATGAATGTGGAATCACAATCTGAGGGGTCAGAAGAGTTTGATGTATCATACACACTTGGTACCCCAAGTGCCCAACAAAGAAGACCTACAGAAAGTGCCCCAAGTGTTTCAGATCATGGTCGTAGGGTGAAAGCAAAGGTTATGGAGGAGATGAGTAAGAATGTAAGCACAATGTCATCTAAGATTGATGCTCTTGTTAATATTTTTTCAAGTGATAAGGAAGTGGCTGAATTGCAAGCGAAACTTGATAGTGAGTTGAACAAGATTGACGGCCTTACAGAATTTCAAGTCTTTCGAGCCACGAACATTTTAGCTAGTCAACATGACCTGCTGAGAGTGTTCTTCGGCATGTCCGAGGAAAGGAAACAGACATATGTTACATATCTGTTGGAACATGGCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

323

Amino Acids

36.86

Weight (kDa)

4.97

Isoelectric Point (pI)

63.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	19 - 114	9.5e-10	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000883)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08720 FvH4_3g22621 FvH4_4g11702 FvH4_5g01520 FvH4_5g01520 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g36380 FvH4_6g01730 FvH4_6g09170 FvH4_6g20010 FvH4_6g28113
malus_domestica	MD06G1073100.v1.1
prunus_persica	Prupe.2G067700_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.7G013000_v2.0.a1
pyrus_communis	pycom01g10330 pycom06g07250
rosa_chinensis	RchiOBHm_Chr7g0199161 RchiOBHm_Chr7g0199171
rosa_laevigata	RLG00000003809 RLG00000014802
rosa_multiflora	Rmu_sc0004791.1_g000001 Rmu_sc0006115.1_g000003 Rmu_sc0037059.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015450 Rroxscaffold_1G00015460 Rroxscaffold_3G00256990 Rroxscaffold_3G00257000 Rroxscaffold_4G00326050 Rroxscaffold_7G00182010
rosa_rugosa	Rorug03G0005500 Rorug03G0273000 Rorug05G0372800 Rorug05G0372900 Rorug07G0053100
rosa_samantha	Rh1BG202800 Rh1DG102500 Rh3AG101900 Rh3AG320900 Rh3CG107700 Rh3DG355100 Rh7AG176700 Rh7AG176800 Rh7AG365300 Rh7BG180300 Rh7CG185900 Rh7CG186000 Rh7CG384200 Rh7DG179700 Rh7DG179800
rosa_wichuraiana	Rw1G014270 Rw3G028010 Rw7G015540 Rw7G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	903
Acc65I	GGTACC	1 cut(s)	626
AccB1I	GGYRCC	1 cut(s)	626
AccII	CGCG	1 cut(s)	226
AciI	CCGC	1 cut(s)	263
AcsI	RAATTY	3 cut(s)	476, 513, 848
AfaI	GTAC	1 cut(s)	628
AfiI	CCNNNNNNNGG	3 cut(s)	163, 194, 927
AgsI	TTSAA	6 cut(s)	15, 139, 241, 777, 826, 854
AluBI	AGCT	2 cut(s)	428, 881
AluI	AGCT	2 cut(s)	428, 881
AoxI	GGCC	3 cut(s)	37, 204, 838
ApeKI	GCWGC	1 cut(s)	539
ApoI	RAATTY	3 cut(s)	476, 513, 848
Asp718I	GGTACC	1 cut(s)	626
AspS9I	GGNCC	2 cut(s)	37, 346
AsuC2I	CCSGG	1 cut(s)	189
AsuHPI	GGTGA	1 cut(s)	706
AvaII	GGWCC	1 cut(s)	346
BaeGI	GKGCMC	2 cut(s)	640, 667
BanI	GGYRCC	1 cut(s)	626
BauI	CACGAG	1 cut(s)	429
BbsI	GAAGAC	1 cut(s)	655
BbvI	GCAGC	1 cut(s)	526
BccI	CCATC	1 cut(s)	166
BceAI	ACGGC	1 cut(s)	853
BclI	TGATCA	1 cut(s)	508
BcnI	CCSGG	1 cut(s)	189
BfaI	CTAG	2 cut(s)	518, 882
BfmI	CTRYAG	1 cut(s)	654
BfuAI	ACCTGC	1 cut(s)	903
BisI	GCNGC	1 cut(s)	540
BlsI	GCNGC	1 cut(s)	541
Bme1390I	CCNGG	1 cut(s)	189
Bme18I	GGWCC	1 cut(s)	346
BmgT120I	GGNCC	2 cut(s)	37, 346
BmiI	GGNNCC	3 cut(s)	38, 347, 628
BmrFI	CCNGG	1 cut(s)	189
BmsI	GCATC	4 cut(s)	166, 487, 526, 745
BpiI	GAAGAC	1 cut(s)	655
BpuMI	CCSGG	1 cut(s)	189
BsaJI	CCNNGG	3 cut(s)	63, 258, 921
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 194, 927
BseDI	CCNNGG	3 cut(s)	63, 258, 921
BseGI	GGATG	3 cut(s)	181, 496, 502
BseLI	CCNNNNNNNGG	3 cut(s)	163, 194, 927
BseMII	CTCAG	2 cut(s)	579, 890
BseRI	GAGGAG	1 cut(s)	728
BseSI	GKGCMC	2 cut(s)	640, 667
BseXI	GCAGC	1 cut(s)	526
Bsh1236I	CGCG	1 cut(s)	226
BshFI	GGCC	3 cut(s)	39, 206, 840
BshNI	GGYRCC	1 cut(s)	626
BsiSI	CCGG	1 cut(s)	188
BslI	CCNNNNNNNGG	3 cut(s)	163, 194, 927
BsnI	GGCC	3 cut(s)	39, 206, 840
Bsp1286I	GDGCHC	2 cut(s)	640, 667
Bsp143I	GATC	3 cut(s)	122, 508, 679
Bsp68I	TCGCGA	1 cut(s)	226
BspACI	CCGC	1 cut(s)	263
BspANI	GGCC	3 cut(s)	39, 206, 840
BspCNI	CTCAG	2 cut(s)	580, 891
BspFNI	CGCG	1 cut(s)	226
BspLI	GGNNCC	3 cut(s)	38, 347, 628
BspMI	ACCTGC	1 cut(s)	903
BspT107I	GGYRCC	1 cut(s)	626
BssECI	CCNNGG	3 cut(s)	63, 258, 921
BssMI	GATC	3 cut(s)	122, 508, 679
BssSI	CACGAG	1 cut(s)	429
BssT1I	CCWWGG	2 cut(s)	63, 258
Bst2BI	CACGAG	1 cut(s)	429
Bst6I	CTCTTC	1 cut(s)	594
BstC8I	GCNNGC	1 cut(s)	804
BstDEI	CTNAG	3 cut(s)	588, 747, 899
BstF5I	GGATG	3 cut(s)	181, 496, 502
BstFNI	CGCG	1 cut(s)	226
BstKTI	GATC	3 cut(s)	125, 511, 682
BstMBI	GATC	3 cut(s)	122, 508, 679
BstNSI	RCATGY	1 cut(s)	919
BstSCI	CCNGG	1 cut(s)	187
BstSFI	CTRYAG	1 cut(s)	654
BstSLI	GKGCMC	2 cut(s)	640, 667
BstUI	CGCG	1 cut(s)	226
BstV1I	GCAGC	1 cut(s)	526
BstV2I	GAAGAC	1 cut(s)	655
BsuRI	GGCC	3 cut(s)	39, 206, 840
BtsCI	GGATG	3 cut(s)	181, 496, 502
BtuMI	TCGCGA	1 cut(s)	226
BveI	ACCTGC	1 cut(s)	903
Cac8I	GCNNGC	1 cut(s)	804
Cfr13I	GGNCC	2 cut(s)	37, 346
Csp6I	GTAC	1 cut(s)	627
CviAII	CATG	5 cut(s)	254, 683, 890, 916, 962
CviJI	RGCY	9 cut(s)	39, 167, 206, 385, 428, 794, 840, 866, 881
CviKI_1	RGCY	9 cut(s)	39, 167, 206, 385, 428, 794, 840, 866, 881
CviQI	GTAC	1 cut(s)	627
DdeI	CTNAG	3 cut(s)	588, 747, 899
DpnI	GATC	3 cut(s)	124, 510, 681
DpnII	GATC	3 cut(s)	122, 508, 679
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
EciI	GGCGGA	1 cut(s)	278
Eco130I	CCWWGG	2 cut(s)	63, 258
Eco147I	AGGCCT	1 cut(s)	206
Eco47I	GGWCC	1 cut(s)	346
EcoT14I	CCWWGG	2 cut(s)	63, 258
ErhI	CCWWGG	2 cut(s)	63, 258
FaeI	CATG	5 cut(s)	257, 686, 893, 919, 965
FalI	AAGNNNNNCTT	2 cut(s)	795, 827
FatI	CATG	5 cut(s)	253, 682, 889, 915, 961
FauNDI	CATATG	1 cut(s)	940
FbaI	TGATCA	1 cut(s)	508
Fnu4HI	GCNGC	1 cut(s)	540
FokI	GGATG	3 cut(s)	188, 503, 509
Fsp4HI	GCNGC	1 cut(s)	540
FspBI	CTAG	2 cut(s)	518, 882
GluI	GCNGC	1 cut(s)	540
HaeIII	GGCC	3 cut(s)	39, 206, 840
HapII	CCGG	1 cut(s)	188
Hin1II	CATG	5 cut(s)	257, 686, 893, 919, 965
HincII	GTYRAC	1 cut(s)	887
HindII	GTYRAC	1 cut(s)	887
HinfI	GANTC	5 cut(s)	71, 135, 221, 553, 578
HpaII	CCGG	1 cut(s)	188
HphI	GGTGA	1 cut(s)	706
Hpy166II	GTNNAC	1 cut(s)	887
Hpy188I	TCNGA	7 cut(s)	127, 552, 558, 589, 598, 679, 922
Hpy188III	TCNNGA	5 cut(s)	55, 107, 225, 349, 431
Hpy8I	GTNNAC	1 cut(s)	887
HpyAV	CCTTC	2 cut(s)	27, 321
HpyCH4V	TGCA	5 cut(s)	94, 365, 443, 500, 802
HpyF3I	CTNAG	3 cut(s)	588, 747, 899
Hsp92II	CATG	5 cut(s)	257, 686, 893, 919, 965
KpnI	GGTACC	1 cut(s)	630
Ksp22I	TGATCA	1 cut(s)	508
Kzo9I	GATC	3 cut(s)	122, 508, 679
LpnPI	CCDG	9 cut(s)	40, 53, 170, 188, 201, 362, 470, 528, 908
Lsp1109I	GCAGC	1 cut(s)	526
LweI	GCATC	4 cut(s)	166, 487, 526, 745
MaeI	CTAG	2 cut(s)	518, 882
MaeIII	GTNAC	2 cut(s)	146, 943
MalI	GATC	3 cut(s)	124, 510, 681
MboI	GATC	3 cut(s)	122, 508, 679
MboII	GAAGA	4 cut(s)	253, 611, 660, 901
MhlI	GDGCHC	2 cut(s)	640, 667
MluCI	AATT	6 cut(s)	10, 98, 476, 513, 797, 848
MmeI	TCCRAC	2 cut(s)	272, 936
MseI	TTAA	2 cut(s)	231, 765
MspI	CCGG	1 cut(s)	188
MspR9I	CCNGG	1 cut(s)	189
MvnI	CGCG	1 cut(s)	226
NciI	CCSGG	1 cut(s)	189
NdeI	CATATG	1 cut(s)	940
NdeII	GATC	3 cut(s)	122, 508, 679
NlaIII	CATG	5 cut(s)	257, 686, 893, 919, 965
NlaIV	GGNNCC	3 cut(s)	38, 347, 628
NruI	TCGCGA	1 cut(s)	226
NspI	RCATGY	1 cut(s)	919
PceI	AGGCCT	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	1 cut(s)	918
PfeI	GAWTC	5 cut(s)	71, 135, 221, 553, 578
PkrI	GCNGC	1 cut(s)	541
PspN4I	GGNNCC	3 cut(s)	38, 347, 628
PspPI	GGNCC	2 cut(s)	37, 346
RruI	TCGCGA	1 cut(s)	226
RsaI	GTAC	1 cut(s)	628
RsaNI	GTAC	1 cut(s)	627
SaqAI	TTAA	2 cut(s)	231, 765
SatI	GCNGC	1 cut(s)	540
Sau3AI	GATC	3 cut(s)	122, 508, 679
Sau96I	GGNCC	2 cut(s)	37, 346
ScrFI	CCNGG	1 cut(s)	189
SduI	GDGCHC	2 cut(s)	640, 667
SetI	ASST	5 cut(s)	430, 655, 708, 883, 897
SfaNI	GCATC	4 cut(s)	166, 487, 526, 745
SfcI	CTRYAG	1 cut(s)	654
SinI	GGWCC	1 cut(s)	346
Sse9I	AATT	6 cut(s)	10, 98, 476, 513, 797, 848
SseBI	AGGCCT	1 cut(s)	206
SsiI	CCGC	1 cut(s)	263
SspI	AATATT	1 cut(s)	769
SspMI	CTAG	2 cut(s)	518, 882
StuI	AGGCCT	1 cut(s)	206
StyD4I	CCNGG	1 cut(s)	187
StyI	CCWWGG	2 cut(s)	63, 258
TaqI	TCGA	3 cut(s)	84, 219, 862
TasI	AATT	6 cut(s)	10, 98, 476, 513, 797, 848
TfiI	GAWTC	5 cut(s)	71, 135, 221, 553, 578
Tru1I	TTAA	2 cut(s)	231, 765
Tru9I	TTAA	2 cut(s)	231, 765
TseI	GCWGC	1 cut(s)	539
TspDTI	ATGAA	3 cut(s)	318, 354, 584
VpaK11BI	GGWCC	1 cut(s)	346
XapI	RAATTY	3 cut(s)	476, 513, 848
XceI	RCATGY	1 cut(s)	919
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XspI	CTAG	2 cut(s)	518, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.