pycom06g07250
MYB Family

Myb/SANT-like DNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000883
Physical Location & Seq
Forward (+)
11788771 .. 11789658
888 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g07250.1

Sequence Viewer

Length: 801 bp
ATGCTGGAAGCTAAACTGCCGGGTTGTGGAATACAAGCGTCTCCTCACATTGAATCACGAGTTAAGACATTGAAGAAAAAGTATTGTGCCTTAACTGAGATGTTATCTCAAGGTGGATTTAGTTGGGATGATAAACAAATGATGTTGGTTTGCAATAGAAGTGTATATGATGAATGGGTGAAGAAAAGAAGGGATGCAAGTGGACTGTATGGCAAGCCATTTCCATTCTACCCTGTTTTGCGGGAGATATATGAAAAAGGTCGTCATACTGGTACAAATGTTGGCAATGATGATGATGATGAAGAGGACATTAGGCAAGAGGATGCAAACATTGATCAAACTCATGGCGGGGACGATGATTTGGGTGAAAATGTGATTCTGAATGCGGATACGAATATAGAATCAGAGTCTGAAGGGATGGAACAGTTTGATGTATCATTTAGTACCCAACAACGAAGGCCTGCACAAAGTACCCCAAGTGTTTCAGATCCCGGTCGCAGGGTGAAAGCAAAGGTAATGGAGGAGGTGACAAAGAATTTTGGGAGTATGGCAGCTTCGGTACAAGCGATGACGTCTAAGATTGATGCTCTGATTAAAGTTCTTTCAACTGATAAACAAGTGGCTGAATTGCAAGCTAAACTTGACGGTGAGTTGAGCAAAATTGAAGGCCTTACCGGATTGCAAGTCTTTAGAGCGATAAATATACTGGCCACTAATCATGACCTGCTGAGAGTGTTCTTTACCATGTCCGAGGAAAGGAAAAAGGTATACATTACGCATCTGTTAGAGCATGGCTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-bind_3

Protein Analysis

267

Amino Acids

29.85

Weight (kDa)

5.28

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 575
Acc36I ACCTGC 1 cut(s) 732
AccI GTMKAC 1 cut(s) 768
AciI CCGC 3 cut(s) 241, 348, 386
AclWI GGATC 1 cut(s) 482
AcoI YGGCCR 1 cut(s) 708
AcsI RAATTY 1 cut(s) 535
AcuI CTGAAG 1 cut(s) 432
AcyI GRCGYC 1 cut(s) 572
AfaI GTAC 4 cut(s) 274, 445, 472, 561
AfiI CCNNNNNNNGG 3 cut(s) 26, 498, 756
AgsI TTSAA 4 cut(s) 53, 73, 606, 665
AluBI AGCT 3 cut(s) 11, 554, 635
AluI AGCT 3 cut(s) 11, 554, 635
Alw26I GTCTC 1 cut(s) 45
AlwI GGATC 1 cut(s) 482
AlwNI CAGNNNCTG 1 cut(s) 410
AoxI GGCC 3 cut(s) 458, 667, 708
ApeKI GCWGC 1 cut(s) 551
ApoI RAATTY 1 cut(s) 535
AsuC2I CCSGG 2 cut(s) 21, 492
AsuHPI GGTGA 5 cut(s) 190, 377, 514, 538, 659
BaeI ACNNNNGTAYC 2 cut(s) 264, 297
BalI TGGCCA 1 cut(s) 710
BarI GAAGNNNNNNTAC 2 cut(s) 538, 570
BauI CACGAG 1 cut(s) 57
BbvI GCAGC 1 cut(s) 563
BccI CCATC 1 cut(s) 412
BciVI GTATCC 1 cut(s) 382
BclI TGATCA 1 cut(s) 334
BcnI CCSGG 2 cut(s) 21, 492
BcoDI GTCTC 1 cut(s) 45
BfuAI ACCTGC 1 cut(s) 732
BfuI GTATCC 1 cut(s) 382
BisI GCNGC 1 cut(s) 552
BlsI GCNGC 1 cut(s) 553
Bme1390I CCNGG 2 cut(s) 21, 492
BmrFI CCNGG 2 cut(s) 21, 492
BmsI GCATC 4 cut(s) 184, 313, 574, 787
BpuEI CTTGAG 1 cut(s) 93
BpuMI CCSGG 2 cut(s) 21, 492
BsaHI GRCGYC 1 cut(s) 572
BsaJI CCNNGG 1 cut(s) 750
BsaWI WCCGGW 1 cut(s) 674
Bsc4I CCNNNNNNNGG 3 cut(s) 26, 498, 756
Bse1I ACTGG 2 cut(s) 274, 711
Bse3DI GCAATG 1 cut(s) 292
BseDI CCNNGG 1 cut(s) 750
BseGI GGATG 4 cut(s) 133, 199, 328, 423
BseLI CCNNNNNNNGG 3 cut(s) 26, 498, 756
BseMI GCAATG 1 cut(s) 292
BseMII CTCAG 2 cut(s) 87, 719
BseNI ACTGG 2 cut(s) 274, 711
BseRI GAGGAG 2 cut(s) 33, 536
BseXI GCAGC 1 cut(s) 563
BsgI GTGCAG 1 cut(s) 447
Bsh1285I CGRYCG 1 cut(s) 496
BshFI GGCC 3 cut(s) 460, 669, 710
BsiEI CGRYCG 1 cut(s) 496
BsiSI CCGG 3 cut(s) 20, 492, 675
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 3 cut(s) 26, 498, 756
BsmAI GTCTC 1 cut(s) 45
BsmBI CGTCTC 1 cut(s) 45
BsmFI GGGAC 1 cut(s) 365
BsmI GAATGC 1 cut(s) 388
BsnI GGCC 3 cut(s) 460, 669, 710
Bsp143I GATC 2 cut(s) 334, 487
BspACI CCGC 3 cut(s) 241, 348, 386
BspANI GGCC 3 cut(s) 460, 669, 710
BspCNI CTCAG 2 cut(s) 88, 720
BspHI TCATGA 1 cut(s) 718
BspMI ACCTGC 1 cut(s) 732
BspPI GGATC 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 292
BsrI ACTGG 2 cut(s) 274, 711
BssECI CCNNGG 1 cut(s) 750
BssMI GATC 2 cut(s) 334, 487
BssNAI GTATAC 1 cut(s) 769
BssNI GRCGYC 1 cut(s) 572
BssSI CACGAG 1 cut(s) 57
Bst1107I GTATAC 1 cut(s) 769
Bst2BI CACGAG 1 cut(s) 57
Bst4CI ACNGT 3 cut(s) 207, 426, 647
Bst6I CTCTTC 1 cut(s) 297
BstACI GRCGYC 1 cut(s) 572
BstC8I GCNNGC 3 cut(s) 215, 462, 633
BstDEI CTNAG 3 cut(s) 96, 576, 728
BstF5I GGATG 4 cut(s) 133, 199, 328, 423
BstKTI GATC 2 cut(s) 337, 490
BstMAI GTCTC 1 cut(s) 45
BstMBI GATC 2 cut(s) 334, 487
BstMCI CGRYCG 1 cut(s) 496
BstSCI CCNGG 2 cut(s) 19, 490
BstV1I GCAGC 1 cut(s) 563
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BstZ17I GTATAC 1 cut(s) 769
BsuI GTATCC 1 cut(s) 382
BsuRI GGCC 3 cut(s) 460, 669, 710
BtgZI GCGATG 1 cut(s) 581
BtsCI GGATG 4 cut(s) 133, 199, 328, 423
BveI ACCTGC 1 cut(s) 732
Cac8I GCNNGC 3 cut(s) 215, 462, 633
CaiI CAGNNNCTG 1 cut(s) 410
CciI TCATGA 1 cut(s) 718
CseI GACGC 1 cut(s) 27
Csp6I GTAC 4 cut(s) 273, 444, 471, 560
CviAII CATG 4 cut(s) 344, 719, 745, 791
CviJI RGCY 9 cut(s) 11, 217, 460, 554, 623, 635, 669, 710, 795
CviKI_1 RGCY 9 cut(s) 11, 217, 460, 554, 623, 635, 669, 710, 795
CviQI GTAC 4 cut(s) 273, 444, 471, 560
DdeI CTNAG 3 cut(s) 96, 576, 728
DpnI GATC 2 cut(s) 336, 489
DpnII GATC 2 cut(s) 334, 487
EaeI YGGCCR 1 cut(s) 708
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco147I AGGCCT 2 cut(s) 460, 669
Eco57I CTGAAG 1 cut(s) 432
Esp3I CGTCTC 1 cut(s) 45
FaeI CATG 4 cut(s) 347, 722, 748, 794
FalI AAGNNNNNCTT 2 cut(s) 624, 656
FaqI GGGAC 1 cut(s) 365
FatI CATG 4 cut(s) 343, 718, 744, 790
FauI CCCGC 2 cut(s) 234, 341
FbaI TGATCA 1 cut(s) 334
FblI GTMKAC 1 cut(s) 768
Fnu4HI GCNGC 1 cut(s) 552
FokI GGATG 4 cut(s) 140, 206, 335, 430
Fsp4HI GCNGC 1 cut(s) 552
GluI GCNGC 1 cut(s) 552
HaeIII GGCC 3 cut(s) 460, 669, 710
HapII CCGG 3 cut(s) 20, 492, 675
HgaI GACGC 1 cut(s) 27
Hin1I GRCGYC 1 cut(s) 572
Hin1II CATG 4 cut(s) 347, 722, 748, 794
HinfI GANTC 4 cut(s) 53, 376, 401, 407
HpaII CCGG 3 cut(s) 20, 492, 675
HphI GGTGA 5 cut(s) 190, 377, 514, 538, 659
Hpy166II GTNNAC 2 cut(s) 203, 769
Hpy188I TCNGA 6 cut(s) 381, 406, 412, 487, 591, 751
Hpy188III TCNNGA 2 cut(s) 57, 719
Hpy8I GTNNAC 2 cut(s) 203, 769
HpyAV CCTTC 4 cut(s) 183, 407, 450, 659
HpyCH4III ACNGT 3 cut(s) 207, 426, 647
HpyCH4IV ACGT 1 cut(s) 572
HpyCH4V TGCA 6 cut(s) 153, 197, 326, 464, 631, 682
HpyF3I CTNAG 3 cut(s) 96, 576, 728
HpySE526I ACGT 1 cut(s) 572
Hsp92I GRCGYC 1 cut(s) 572
Hsp92II CATG 4 cut(s) 347, 722, 748, 794
Ksp22I TGATCA 1 cut(s) 334
Kzo9I GATC 2 cut(s) 334, 487
LpnPI CCDG 9 cut(s) 33, 246, 255, 474, 484, 505, 688, 692, 737
Lsp1109I GCAGC 1 cut(s) 563
LweI GCATC 4 cut(s) 184, 313, 574, 787
MaeII ACGT 1 cut(s) 572
MaeIII GTNAC 1 cut(s) 526
MalI GATC 2 cut(s) 336, 489
MboI GATC 2 cut(s) 334, 487
MboII GAAGA 3 cut(s) 85, 193, 314
MflI RGATCY 1 cut(s) 487
MlsI TGGCCA 1 cut(s) 710
MluCI AATT 3 cut(s) 535, 626, 660
MluNI TGGCCA 1 cut(s) 710
MlyI GAGTC 1 cut(s) 416
MnlI CCTC 6 cut(s) 54, 298, 313, 514, 517, 745
Mox20I TGGCCA 1 cut(s) 710
MscI TGGCCA 1 cut(s) 710
MseI TTAA 3 cut(s) 63, 92, 594
Msp20I TGGCCA 1 cut(s) 710
MspI CCGG 3 cut(s) 20, 492, 675
MspR9I CCNGG 2 cut(s) 21, 492
Mva1269I GAATGC 1 cut(s) 388
NciI CCSGG 2 cut(s) 21, 492
NdeII GATC 2 cut(s) 334, 487
NlaIII CATG 4 cut(s) 347, 722, 748, 794
NmuCI GTSAC 1 cut(s) 526
PagI TCATGA 1 cut(s) 718
PceI AGGCCT 2 cut(s) 460, 669
PcsI WCGNNNNNNNCGW 1 cut(s) 563
PctI GAATGC 1 cut(s) 388
PfeI GAWTC 3 cut(s) 53, 376, 401
PkrI GCNGC 1 cut(s) 553
PleI GAGTC 1 cut(s) 415
PpsI GAGTC 1 cut(s) 415
PstNI CAGNNNCTG 1 cut(s) 410
PsuI RGATCY 1 cut(s) 487
RsaI GTAC 4 cut(s) 274, 445, 472, 561
RsaNI GTAC 4 cut(s) 273, 444, 471, 560
SaqAI TTAA 3 cut(s) 63, 92, 594
SatI GCNGC 1 cut(s) 552
Sau3AI GATC 2 cut(s) 334, 487
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 2 cut(s) 21, 492
SfaNI GCATC 4 cut(s) 184, 313, 574, 787
SmlI CTYRAG 1 cut(s) 108
SmoI CTYRAG 1 cut(s) 108
Sse9I AATT 3 cut(s) 535, 626, 660
SseBI AGGCCT 2 cut(s) 460, 669
SsiI CCGC 3 cut(s) 241, 348, 386
StuI AGGCCT 2 cut(s) 460, 669
StyD4I CCNGG 2 cut(s) 19, 490
TaaI ACNGT 3 cut(s) 207, 426, 647
TaiI ACGT 1 cut(s) 575
TasI AATT 3 cut(s) 535, 626, 660
TfiI GAWTC 3 cut(s) 53, 376, 401
Tru1I TTAA 3 cut(s) 63, 92, 594
Tru9I TTAA 3 cut(s) 63, 92, 594
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 1 cut(s) 551
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 3 cut(s) 186, 267, 315
XapI RAATTY 1 cut(s) 535
XmiI GTMKAC 1 cut(s) 768
ZraI GACGTC 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.