Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000883

Physical Location & Seq

Genomic Coordinates Reverse (-)

47083713 .. 47084321

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG365300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGGAACAAATGCTGGAAATGCTGAAGATGATGAAGAAGAAGTTAGGGAAGAGGATGCAAGCATGAATCAAGAGGGTGTACGACCTGATGACTTTTTTCAACAAATGAACATGACTACTGATGGTGGATCTCAGTATAGGGGATCACAATTTGAGGGGCTTGGTGAAACGGAAGATGATGATATATCTTTTATACAACCAAGTCCCCCCCAACCACCAAGTGCCAAGCAACGTGCCAAACAGCAGAGGTCAACTCAAGATGTAACAAATGCTCCAAATAATACTCGTAGAAAGGCAAGAGCTTTGGATGATATGGCTAAAAAATTTGGAGTGATCACTGAAGCCATTGCAGGAATGGCTCCAAAGTTTGAAGGCTTGATTAATGTTCTCTCAACAGATAAGGATCTTGCTGATATGCAAGGCAAACTTGGTGGTGAGCTGAGGAAAATGGATTTCCTATCTCCATTGCAGGTATTTCACGTCACCAACAAATTAGCTAAAGAGCATGACTTGTTGAGGGTCTTCTTCACCATGACTGATGAGGAAAAGAAGGATTACATAATCAACCTTCTGCAATATGGCCTACAGTTAATGGGTGCTTGGACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

202

Amino Acids

22.64

Weight (kDa)

4.65

Isoelectric Point (pI)

45.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000883)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08720 FvH4_3g22621 FvH4_4g11702 FvH4_5g01520 FvH4_5g01520 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g36380 FvH4_6g01730 FvH4_6g09170 FvH4_6g20010 FvH4_6g28113
malus_domestica	MD06G1073100.v1.1
prunus_persica	Prupe.2G067700_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.7G013000_v2.0.a1
pyrus_communis	pycom01g10330 pycom06g07250
rosa_chinensis	RchiOBHm_Chr7g0199161 RchiOBHm_Chr7g0199171
rosa_laevigata	RLG00000003809 RLG00000014802
rosa_multiflora	Rmu_sc0004791.1_g000001 Rmu_sc0006115.1_g000003 Rmu_sc0037059.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015450 Rroxscaffold_1G00015460 Rroxscaffold_3G00256990 Rroxscaffold_3G00257000 Rroxscaffold_4G00326050 Rroxscaffold_7G00182010
rosa_rugosa	Rorug03G0005500 Rorug03G0273000 Rorug05G0372800 Rorug05G0372900 Rorug07G0053100
rosa_samantha	Rh1BG202800 Rh1DG102500 Rh3AG101900 Rh3AG320900 Rh3CG107700 Rh3DG355100 Rh7AG176700 Rh7AG176800 Rh7AG365300 Rh7BG180300 Rh7CG185900 Rh7CG186000 Rh7CG384200 Rh7DG179700 Rh7DG179800
rosa_wichuraiana	Rw1G014270 Rw3G028010 Rw7G015540 Rw7G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	460
AclWI	GGATC	3 cut(s)	136, 151, 411
AcsI	RAATTY	1 cut(s)	323
AcuI	CTGAAG	2 cut(s)	45, 360
AdeI	CACNNNGTG	1 cut(s)	221
AfaI	GTAC	1 cut(s)	81
AgsI	TTSAA	2 cut(s)	101, 371
AjiI	CACGTC	1 cut(s)	481
AluBI	AGCT	3 cut(s)	302, 439, 497
AluI	AGCT	3 cut(s)	302, 439, 497
AlwI	GGATC	3 cut(s)	136, 151, 411
AoxI	GGCC	1 cut(s)	580
ApoI	RAATTY	1 cut(s)	323
AseI	ATTAAT	1 cut(s)	381
AsuHPI	GGTGA	4 cut(s)	176, 446, 475, 520
BbsI	GAAGAC	1 cut(s)	514
BbvCI	CCTCAGC	1 cut(s)	440
BccI	CCATC	1 cut(s)	116
BclI	TGATCA	1 cut(s)	333
BfmI	CTRYAG	1 cut(s)	584
BfuAI	ACCTGC	1 cut(s)	460
BmgBI	CACGTC	1 cut(s)	481
BmiI	GGNNCC	1 cut(s)	360
BmsI	GCATC	1 cut(s)	46
BpiI	GAAGAC	1 cut(s)	514
BplI	GAGNNNNNCTC	2 cut(s)	238, 270
Bpu10I	CCTNAGC	1 cut(s)	440
BpuEI	CTTGAG	1 cut(s)	240
BsaBI	GATNNNNATC	1 cut(s)	402
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bse3DI	GCAATG	2 cut(s)	345, 464
Bse8I	GATNNNNATC	1 cut(s)	402
BseGI	GGATG	2 cut(s)	61, 313
BseJI	GATNNNNATC	1 cut(s)	402
BseMI	GCAATG	2 cut(s)	345, 464
BseMII	CTCAG	2 cut(s)	146, 431
BshFI	GGCC	1 cut(s)	582
BslFI	GGGAC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	582
Bsp143I	GATC	4 cut(s)	128, 143, 333, 403
BspANI	GGCC	1 cut(s)	582
BspCNI	CTCAG	2 cut(s)	145, 432
BspLI	GGNNCC	1 cut(s)	360
BspMI	ACCTGC	1 cut(s)	460
BspPI	GGATC	3 cut(s)	136, 151, 411
BsrDI	GCAATG	2 cut(s)	345, 464
BssMI	GATC	4 cut(s)	128, 143, 333, 403
Bst4CI	ACNGT	1 cut(s)	588
Bst6I	CTCTTC	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	61
BstDEI	CTNAG	3 cut(s)	132, 440, 606
BstF5I	GGATG	2 cut(s)	61, 313
BstKTI	GATC	4 cut(s)	131, 146, 336, 406
BstMBI	GATC	4 cut(s)	128, 143, 333, 403
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 356
BstSFI	CTRYAG	1 cut(s)	584
BstV2I	GAAGAC	1 cut(s)	514
BstX2I	RGATCY	2 cut(s)	128, 403
BstYI	RGATCY	2 cut(s)	128, 403
BsuRI	GGCC	1 cut(s)	582
BtrI	CACGTC	1 cut(s)	481
BtsCI	GGATG	2 cut(s)	61, 313
BtsIMutI	CAGTG	1 cut(s)	336
BveI	ACCTGC	1 cut(s)	460
Cac8I	GCNNGC	1 cut(s)	61
Csp6I	GTAC	1 cut(s)	80
CspCI	CAANNNNNGTGG	2 cut(s)	412, 447
CviAII	CATG	4 cut(s)	64, 112, 506, 532
CviJI	RGCY	9 cut(s)	160, 302, 317, 344, 359, 375, 439, 497, 582
CviKI_1	RGCY	9 cut(s)	160, 302, 317, 344, 359, 375, 439, 497, 582
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	3 cut(s)	132, 440, 606
DpnI	GATC	4 cut(s)	130, 145, 335, 405
DpnII	GATC	4 cut(s)	128, 143, 333, 403
DraIII	CACNNNGTG	1 cut(s)	221
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco57I	CTGAAG	2 cut(s)	45, 360
FaeI	CATG	4 cut(s)	67, 115, 509, 535
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FaqI	GGGAC	1 cut(s)	189
FatI	CATG	4 cut(s)	63, 111, 505, 531
FbaI	TGATCA	1 cut(s)	333
FokI	GGATG	2 cut(s)	68, 320
HaeIII	GGCC	1 cut(s)	582
Hin1II	CATG	4 cut(s)	67, 115, 509, 535
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	1 cut(s)	67
HphI	GGTGA	4 cut(s)	176, 446, 475, 520
Hpy166II	GTNNAC	2 cut(s)	80, 252
Hpy188III	TCNNGA	2 cut(s)	71, 257
Hpy8I	GTNNAC	2 cut(s)	80, 252
HpyAV	CCTTC	3 cut(s)	365, 544, 578
HpyCH4III	ACNGT	1 cut(s)	588
HpyCH4IV	ACGT	2 cut(s)	232, 480
HpyCH4V	TGCA	5 cut(s)	59, 350, 418, 469, 574
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 356
HpyF3I	CTNAG	3 cut(s)	132, 440, 606
HpySE526I	ACGT	2 cut(s)	232, 480
Hsp92II	CATG	4 cut(s)	67, 115, 509, 535
Ksp22I	TGATCA	1 cut(s)	333
Kzo9I	GATC	4 cut(s)	128, 143, 333, 403
LmnI	GCTCC	2 cut(s)	277, 364
LpnPI	CCDG	3 cut(s)	99, 336, 455
LweI	GCATC	1 cut(s)	46
MaeII	ACGT	2 cut(s)	232, 480
MaeIII	GTNAC	2 cut(s)	262, 481
MalI	GATC	4 cut(s)	130, 145, 335, 405
MboI	GATC	4 cut(s)	128, 143, 333, 403
MboII	GAAGA	7 cut(s)	38, 47, 50, 62, 185, 514, 517
MflI	RGATCY	2 cut(s)	128, 403
MluCI	AATT	3 cut(s)	149, 323, 491
MnlI	CCTC	7 cut(s)	46, 67, 148, 240, 435, 510, 535
MseI	TTAA	2 cut(s)	381, 590
MwoI	GCNNNNNNNGC	2 cut(s)	20, 356
NdeII	GATC	4 cut(s)	128, 143, 333, 403
NlaIII	CATG	4 cut(s)	67, 115, 509, 535
NlaIV	GGNNCC	1 cut(s)	360
NmuCI	GTSAC	1 cut(s)	481
PfeI	GAWTC	1 cut(s)	67
PshBI	ATTAAT	1 cut(s)	381
PspN4I	GGNNCC	1 cut(s)	360
PsuI	RGATCY	2 cut(s)	128, 403
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	381, 590
Sau3AI	GATC	4 cut(s)	128, 143, 333, 403
SetI	ASST	9 cut(s)	88, 235, 251, 304, 441, 474, 483, 499, 570
SfaNI	GCATC	1 cut(s)	46
SfcI	CTRYAG	1 cut(s)	584
SmlI	CTYRAG	1 cut(s)	255
SmoI	CTYRAG	1 cut(s)	255
Sse9I	AATT	3 cut(s)	149, 323, 491
TaaI	ACNGT	1 cut(s)	588
TaiI	ACGT	2 cut(s)	235, 483
TasI	AATT	3 cut(s)	149, 323, 491
TfiI	GAWTC	1 cut(s)	67
Tru1I	TTAA	2 cut(s)	381, 590
Tru9I	TTAA	2 cut(s)	381, 590
TscAI	CASTG	1 cut(s)	343
TseFI	GTSAC	1 cut(s)	481
Tsp45I	GTSAC	1 cut(s)	481
TspDTI	ATGAA	3 cut(s)	48, 80, 122
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	1 cut(s)	343
VspI	ATTAAT	1 cut(s)	381
XapI	RAATTY	1 cut(s)	323
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.