Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000883

Physical Location & Seq

Genomic Coordinates Reverse (-)

19189149 .. 19195819

Gene Structure 6671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00015450.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCAAGGCAAACTTGGGGGTGAGCTGAGGAAAATGGATTTCCTATCTCCATTGCGGGTATTTCACGTCACCAACAAATTAGCTAAAGAGCATGACTTGTTGAGGGTCTTCTTCACCATGATTGATGAGGAAAAGAAGGATTACATAATCAACCTTCTGCAATTGGCCTACGGTGAATGGATGCTTGGACTTAGTTTTTTCCTTTGTGGATGCTTCACTAGTGTATTGGAAATTATAACTTGTTCGATCGATGTTTCAATTTCTACTTTGAGGGATAGTATGCCGACGAGGATAGGAGAAGCCGGTGGCTTTTTCGAGAGGATGCGCTGGATACATTACTTGCGCGCCGACGAGTTGTCCACCGTCTCACTTGTTTATCAATTACAAGCAATGAGTGTGAATGCAAACCTCACACTACATACCAAAATTAAGTGGAGACAAAGTGGGGGAGAGGTGATGGAAGTCTCAAAGTCACTGAGACCTTCCTCGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

164

Amino Acids

18.79

Weight (kDa)

7.74

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000883)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08720 FvH4_3g22621 FvH4_4g11702 FvH4_5g01520 FvH4_5g01520 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g36380 FvH4_6g01730 FvH4_6g09170 FvH4_6g20010 FvH4_6g28113
malus_domestica	MD06G1073100.v1.1
prunus_persica	Prupe.2G067700_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.7G013000_v2.0.a1
pyrus_communis	pycom01g10330 pycom06g07250
rosa_chinensis	RchiOBHm_Chr7g0199161 RchiOBHm_Chr7g0199171
rosa_laevigata	RLG00000003809 RLG00000014802
rosa_multiflora	Rmu_sc0004791.1_g000001 Rmu_sc0006115.1_g000003 Rmu_sc0037059.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015450 Rroxscaffold_1G00015460 Rroxscaffold_3G00256990 Rroxscaffold_3G00257000 Rroxscaffold_4G00326050 Rroxscaffold_7G00182010
rosa_rugosa	Rorug03G0005500 Rorug03G0273000 Rorug05G0372800 Rorug05G0372900 Rorug07G0053100
rosa_samantha	Rh1BG202800 Rh1DG102500 Rh3AG101900 Rh3AG320900 Rh3CG107700 Rh3DG355100 Rh7AG176700 Rh7AG176800 Rh7AG365300 Rh7BG180300 Rh7CG185900 Rh7CG186000 Rh7CG384200 Rh7DG179700 Rh7DG179800
rosa_wichuraiana	Rw1G014270 Rw3G028010 Rw7G015540 Rw7G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
AccII	CGCG	1 cut(s)	345
AciI	CCGC	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	258
AhdI	GACNNNNNGTC	1 cut(s)	355
AhlI	ACTAGT	1 cut(s)	218
AjiI	CACGTC	1 cut(s)	67
AjuI	GAANNNNNNNTTGG	2 cut(s)	168, 200
AluBI	AGCT	2 cut(s)	25, 83
AluI	AGCT	2 cut(s)	25, 83
Alw26I	GTCTC	4 cut(s)	370, 430, 469, 472
AoxI	GGCC	1 cut(s)	165
AspLEI	GCGC	3 cut(s)	327, 345, 347
AsuHPI	GGTGA	5 cut(s)	32, 61, 106, 185, 466
BbsI	GAAGAC	1 cut(s)	100
BbvCI	CCTCAGC	1 cut(s)	26
BccI	CCATC	1 cut(s)	451
BciVI	GTATCC	1 cut(s)	324
BcoDI	GTCTC	4 cut(s)	370, 430, 469, 472
BcuI	ACTAGT	1 cut(s)	218
BfaI	CTAG	2 cut(s)	219, 493
BfuI	GTATCC	1 cut(s)	324
BmeRI	GACNNNNNGTC	1 cut(s)	355
BmgBI	CACGTC	1 cut(s)	67
BmsI	GCATC	3 cut(s)	171, 200, 312
BpiI	GAAGAC	1 cut(s)	100
Bpu10I	CCTNAGC	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	249
BsaI	GGTCTC	1 cut(s)	472
BsaXI	ACNNNNNCTCC	2 cut(s)	427, 457
Bse118I	RCCGGY	1 cut(s)	302
Bse3DI	GCAATG	2 cut(s)	50, 396
BseCI	ATCGAT	1 cut(s)	249
BseGI	GGATG	3 cut(s)	186, 215, 327
BseMI	GCAATG	2 cut(s)	50, 396
BseMII	CTCAG	2 cut(s)	17, 467
BsePI	GCGCGC	1 cut(s)	343
Bsh1236I	CGCG	1 cut(s)	345
Bsh1285I	CGRYCG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	167
BshVI	ATCGAT	1 cut(s)	249
BsiEI	CGRYCG	1 cut(s)	249
BsiSI	CCGG	1 cut(s)	303
BsmAI	GTCTC	4 cut(s)	370, 430, 469, 472
BsmBI	CGTCTC	1 cut(s)	370
BsmI	GAATGC	1 cut(s)	406
BsnI	GGCC	1 cut(s)	167
Bso31I	GGTCTC	1 cut(s)	472
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	1 cut(s)	55
BspANI	GGCC	1 cut(s)	167
BspCNI	CTCAG	2 cut(s)	18, 468
BspDI	ATCGAT	1 cut(s)	249
BspFNI	CGCG	1 cut(s)	345
BspTNI	GGTCTC	1 cut(s)	472
BsrDI	GCAATG	2 cut(s)	50, 396
BsrFI	RCCGGY	1 cut(s)	302
BssAI	RCCGGY	1 cut(s)	302
BssHII	GCGCGC	1 cut(s)	343
BssMI	GATC	1 cut(s)	246
Bst4CI	ACNGT	2 cut(s)	173, 364
BstC8I	GCNNGC	1 cut(s)	345
BstDEI	CTNAG	3 cut(s)	26, 191, 476
BstF5I	GGATG	3 cut(s)	186, 215, 327
BstFNI	CGCG	1 cut(s)	345
BstHHI	GCGC	3 cut(s)	327, 345, 347
BstKTI	GATC	1 cut(s)	249
BstMAI	GTCTC	4 cut(s)	370, 430, 469, 472
BstMBI	GATC	1 cut(s)	246
BstMCI	CGRYCG	1 cut(s)	249
BstUI	CGCG	1 cut(s)	345
BstV2I	GAAGAC	1 cut(s)	100
Bsu15I	ATCGAT	1 cut(s)	249
BsuI	GTATCC	1 cut(s)	324
BsuRI	GGCC	1 cut(s)	167
BsuTUI	ATCGAT	1 cut(s)	249
BtrI	CACGTC	1 cut(s)	67
BtsCI	GGATG	3 cut(s)	186, 215, 327
BtsIMutI	CAGTG	1 cut(s)	473
Cac8I	GCNNGC	1 cut(s)	345
CfoI	GCGC	3 cut(s)	327, 345, 347
Cfr10I	RCCGGY	1 cut(s)	302
ClaI	ATCGAT	1 cut(s)	249
CviAII	CATG	2 cut(s)	92, 118
CviJI	RGCY	5 cut(s)	25, 83, 167, 302, 309
CviKI_1	RGCY	5 cut(s)	25, 83, 167, 302, 309
DdeI	CTNAG	3 cut(s)	26, 191, 476
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
DriI	GACNNNNNGTC	1 cut(s)	355
Eam1105I	GACNNNNNGTC	1 cut(s)	355
Eco31I	GGTCTC	1 cut(s)	472
Esp3I	CGTCTC	1 cut(s)	370
FaeI	CATG	2 cut(s)	95, 121
FaiI	YATR	6 cut(s)	93, 119, 146, 236, 281, 420
FalI	AAGNNNNNCTT	1 cut(s)	29
FatI	CATG	2 cut(s)	91, 117
FauI	CCCGC	1 cut(s)	48
FokI	GGATG	3 cut(s)	193, 222, 334
FspBI	CTAG	2 cut(s)	219, 493
GlaI	GCGC	3 cut(s)	326, 344, 346
HaeIII	GGCC	1 cut(s)	167
HapII	CCGG	1 cut(s)	303
HhaI	GCGC	3 cut(s)	327, 345, 347
Hin1II	CATG	2 cut(s)	95, 121
Hin6I	GCGC	3 cut(s)	325, 343, 345
HinP1I	GCGC	3 cut(s)	325, 343, 345
HpaII	CCGG	1 cut(s)	303
HphI	GGTGA	5 cut(s)	32, 61, 106, 185, 466
Hpy166II	GTNNAC	1 cut(s)	360
Hpy188III	TCNNGA	1 cut(s)	316
Hpy8I	GTNNAC	1 cut(s)	360
Hpy99I	CGWCG	2 cut(s)	289, 353
HpyAV	CCTTC	3 cut(s)	130, 164, 492
HpyCH4III	ACNGT	2 cut(s)	173, 364
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	3 cut(s)	4, 160, 404
HpyF3I	CTNAG	3 cut(s)	26, 191, 476
HpySE526I	ACGT	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	95, 121
HspAI	GCGC	3 cut(s)	325, 343, 345
Kzo9I	GATC	1 cut(s)	246
LpnPI	CCDG	2 cut(s)	313, 316
LweI	GCATC	3 cut(s)	171, 200, 312
MaeI	CTAG	2 cut(s)	219, 493
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	67, 471
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	2 cut(s)	100, 103
MfeI	CAATTG	1 cut(s)	161
MluCI	AATT	6 cut(s)	77, 161, 231, 258, 380, 426
MnlI	CCTC	8 cut(s)	21, 96, 121, 264, 282, 312, 419, 445
MseI	TTAA	1 cut(s)	429
MspI	CCGG	1 cut(s)	303
MunI	CAATTG	1 cut(s)	161
Mva1269I	GAATGC	1 cut(s)	406
MvnI	CGCG	1 cut(s)	345
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	2 cut(s)	95, 121
NmuCI	GTSAC	2 cut(s)	67, 471
PauI	GCGCGC	1 cut(s)	343
PctI	GAATGC	1 cut(s)	406
Ple19I	CGATCG	1 cut(s)	249
PsiI	TTATAA	1 cut(s)	236
PteI	GCGCGC	1 cut(s)	343
PvuI	CGATCG	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	429
Sau3AI	GATC	1 cut(s)	246
SetI	ASST	7 cut(s)	27, 69, 85, 156, 411, 456, 484
SfaNI	GCATC	3 cut(s)	171, 200, 312
SpeI	ACTAGT	1 cut(s)	218
Sse9I	AATT	6 cut(s)	77, 161, 231, 258, 380, 426
SsiI	CCGC	1 cut(s)	55
SspMI	CTAG	2 cut(s)	219, 493
TaaI	ACNGT	2 cut(s)	173, 364
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	4 cut(s)	245, 249, 315, 488
TasI	AATT	6 cut(s)	77, 161, 231, 258, 380, 426
Tru1I	TTAA	1 cut(s)	429
Tru9I	TTAA	1 cut(s)	429
TscAI	CASTG	1 cut(s)	480
TseFI	GTSAC	2 cut(s)	67, 471
Tsp45I	GTSAC	2 cut(s)	67, 471
TspRI	CASTG	1 cut(s)	480
XspI	CTAG	2 cut(s)	219, 493

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.