Rorug03G0005500
MYB Family

Putative S-adenosyl-L-methionine-dependent methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0000883
Physical Location & Seq
Reverse (-)
434215 .. 435510
1296 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0005500.1

Sequence Viewer

Length: 228 bp
ATGTGGAGAGACAAGCCCCCCGGTTTGAAGATTCTGTGGGTCTGGACCCTCGGCACCGCCGCTGTTTTAGTTGCCAATGTGGTCAGGACCAGGATGAGAGACATGGACACCCTTATGAACAACACTGAGCAGCATCATCATCAACAACAACAGGCGGCCGCCGCCGACACGGAGACACTTTTGTTGCCTGAATCCGATCAAGTGATTCGGGAAGAGAAATCCTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Methyltransf_29

Protein Analysis

75

Amino Acids

8.61

Weight (kDa)

5.82

Isoelectric Point (pI)

30.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 53
AciI CCGC 5 cut(s) 57, 60, 155, 159, 162
AcoI YGGCCR 1 cut(s) 156
AgsI TTSAA 1 cut(s) 28
AjnI CCWGG 1 cut(s) 89
Alw26I GTCTC 3 cut(s) 3, 93, 167
AoxI GGCC 1 cut(s) 156
ApeKI GCWGC 1 cut(s) 130
AspS9I GGNCC 2 cut(s) 45, 87
AsuC2I CCSGG 1 cut(s) 21
AvaII GGWCC 2 cut(s) 45, 87
BanI GGYRCC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 142
BciT130I CCWGG 1 cut(s) 91
BcnI CCSGG 1 cut(s) 21
BcoDI GTCTC 3 cut(s) 3, 93, 167
BisI GCNGC 5 cut(s) 60, 131, 156, 159, 162
BlsI GCNGC 5 cut(s) 61, 132, 157, 160, 163
Bme1390I CCNGG 2 cut(s) 21, 91
Bme18I GGWCC 2 cut(s) 45, 87
BmgT120I GGNCC 2 cut(s) 45, 87
BmiI GGNNCC 2 cut(s) 47, 55
BmrFI CCNGG 2 cut(s) 21, 91
BmsI GCATC 1 cut(s) 142
BplI GAGNNNNNCTC 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 21
BsaJI CCNNGG 2 cut(s) 19, 49
BseBI CCWGG 1 cut(s) 91
BseDI CCNNGG 2 cut(s) 19, 49
BseGI GGATG 1 cut(s) 99
BseMII CTCAG 1 cut(s) 117
BseX3I CGGCCG 1 cut(s) 156
BseXI GCAGC 1 cut(s) 142
Bsh1285I CGRYCG 1 cut(s) 159
BshFI GGCC 1 cut(s) 158
BshNI GGYRCC 1 cut(s) 53
BsiEI CGRYCG 1 cut(s) 159
BsiSI CCGG 1 cut(s) 21
BsmAI GTCTC 3 cut(s) 3, 93, 167
BsnI GGCC 1 cut(s) 158
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 5 cut(s) 57, 60, 155, 159, 162
BspANI GGCC 1 cut(s) 158
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 2 cut(s) 47, 55
BspT107I GGYRCC 1 cut(s) 53
BssECI CCNNGG 2 cut(s) 19, 49
BssMI GATC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 91
Bst6I CTCTTC 1 cut(s) 207
BstDEI CTNAG 2 cut(s) 126, 225
BstF5I GGATG 1 cut(s) 99
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 3 cut(s) 3, 93, 167
BstMBI GATC 1 cut(s) 196
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 91
BstSCI CCNGG 2 cut(s) 19, 89
BstV1I GCAGC 1 cut(s) 142
BstZI CGGCCG 1 cut(s) 156
BsuRI GGCC 1 cut(s) 158
BtsCI GGATG 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 123
CciNI GCGGCCGC 1 cut(s) 156
Cfr13I GGNCC 2 cut(s) 45, 87
CviAII CATG 1 cut(s) 103
CviJI RGCY 2 cut(s) 16, 158
CviKI_1 RGCY 2 cut(s) 16, 158
DdeI CTNAG 2 cut(s) 126, 225
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
EaeI YGGCCR 1 cut(s) 156
EagI CGGCCG 1 cut(s) 156
Eam1104I CTCTTC 1 cut(s) 207
EarI CTCTTC 1 cut(s) 207
EclXI CGGCCG 1 cut(s) 156
Eco47I GGWCC 2 cut(s) 45, 87
Eco52I CGGCCG 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 89
FaeI CATG 1 cut(s) 106
FaiI YATR 2 cut(s) 104, 116
FatI CATG 1 cut(s) 102
Fnu4HI GCNGC 5 cut(s) 60, 131, 156, 159, 162
FokI GGATG 1 cut(s) 106
Fsp4HI GCNGC 5 cut(s) 60, 131, 156, 159, 162
GluI GCNGC 5 cut(s) 60, 131, 156, 159, 162
HaeIII GGCC 1 cut(s) 158
HapII CCGG 1 cut(s) 21
Hin1II CATG 1 cut(s) 106
HinfI GANTC 3 cut(s) 31, 191, 205
HpaII CCGG 1 cut(s) 21
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 3 cut(s) 43, 85, 209
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpyF3I CTNAG 2 cut(s) 126, 225
Hsp92II CATG 1 cut(s) 106
Kzo9I GATC 1 cut(s) 196
LpnPI CCDG 7 cut(s) 28, 34, 70, 76, 103, 137, 201
Lsp1109I GCAGC 1 cut(s) 142
LweI GCATC 1 cut(s) 142
MalI GATC 1 cut(s) 198
MboI GATC 1 cut(s) 196
MboII GAAGA 2 cut(s) 40, 224
MnlI CCTC 1 cut(s) 59
MslI CAYNNNNRTG 1 cut(s) 113
MspA1I CMGCKG 1 cut(s) 62
MspI CCGG 1 cut(s) 21
MspR9I CCNGG 2 cut(s) 21, 91
MvaI CCWGG 1 cut(s) 91
MwoI GCNNNNNNNGC 1 cut(s) 161
NciI CCSGG 1 cut(s) 21
NdeII GATC 1 cut(s) 196
NlaIII CATG 1 cut(s) 106
NlaIV GGNNCC 2 cut(s) 47, 55
NmeAIII GCCGAG 1 cut(s) 30
NotI GCGGCCGC 1 cut(s) 156
PfeI GAWTC 3 cut(s) 31, 191, 205
PkrI GCNGC 5 cut(s) 61, 132, 157, 160, 163
Psp6I CCWGG 1 cut(s) 89
PspGI CCWGG 1 cut(s) 89
PspN4I GGNNCC 2 cut(s) 47, 55
PspPI GGNCC 2 cut(s) 45, 87
RseI CAYNNNNRTG 1 cut(s) 113
SatI GCNGC 5 cut(s) 60, 131, 156, 159, 162
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 2 cut(s) 45, 87
ScrFI CCNGG 2 cut(s) 21, 91
SfaNI GCATC 1 cut(s) 142
SinI GGWCC 2 cut(s) 45, 87
SmiMI CAYNNNNRTG 1 cut(s) 113
SsiI CCGC 5 cut(s) 57, 60, 155, 159, 162
StyD4I CCNGG 2 cut(s) 19, 89
TauI GCSGC 4 cut(s) 62, 158, 161, 164
TfiI GAWTC 3 cut(s) 31, 191, 205
TscAI CASTG 1 cut(s) 130
TseI GCWGC 1 cut(s) 130
TspDTI ATGAA 1 cut(s) 131
TspGWI ACGGA 1 cut(s) 185
TspRI CASTG 1 cut(s) 130
VpaK11BI GGWCC 2 cut(s) 45, 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.