Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000883

Physical Location & Seq

Genomic Coordinates Reverse (-)

15678383 .. 15682015

Gene Structure 3633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G015540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2133 bp

ATGATGCAGAATGCACTGAAAGAGTATCTGAATTCTAAGATGACCCGAAACTTTGCGCAGTCTGACAATTTATTGCAACATGACGCGCAGTATCAGGCTCTTGTAGCTTCTCTCTTGAATGGGAACTTGGCAGGCTCAAACTCTTCAATTGTAGATGGTTCTTCCAAATTTCAGCAGACCTCACATTTGGATCAAAATCGCTCCCAGACACATAAAAGGAAGCAAGAAGAGCAATGTGTTTTCACTGCTAGTCCTCAGCTAGCATTGAAGGACCACAATCCACTTCTTAATGGTGTACAACAGGAACCTATTTCCGTATGGCGAAAGCATAAGAAAGCTAGACTGGATGTCAATCAAGAGGCTGTGAACGAGCATGTATTCCAGAAGATGCTGCAGAGTGAGAACTCTGCTGAATCGGAAAGAGATCAAATACGTGCATTTTTTCAGCATAATGTGATACCAAATCAAGATCAGCAAGCTATTTTGAATGCTGCTCCACAGTTGGGAATTGATAGAGAAAAGCAGCTGCAATGGATGAGGCACCCAGTTCCACAACAGGATATTGTGCATCAAGCAACTGCAACGCACGCAGTTCCACAACAGGAGAAGGTGCATCAAGCAACTGCAATGCACCAGCCTGGTGTTTGTTCACATCGGTTAATGCAGTACCTGTATCATACTCGAACTCGGCCAAATGACAATAGCTTGGCCTATTGGAGGCAATTTGTGGCAGAGTTTTATGACCCCTGTGCCAAAAGAAGGTGGTGTTTGTCCTGCTATGATAAAGTTGGAGACCATGCCCTTGGTATTTCCCCCGACGCAGCTATGGTATCATCATGGCCGTGTGGCATATGTAATTGTCAATCAGGGCGGGGATTTGAGGTGAGTTTTGAAGTGCTTCCAAGGCTAAGTAAAGTAACATTTGAGGGTGGTGTGGTTGATGAACTGTTGTTCCTGGATTTGCCTCGTGAGAGTAGATTTTCTTCAGGATTATTGATGCTAGAATGTGGAAGAGCAGTTCAGAAAAGTGTCTATGAGCGGCTTCAAGTTGTTCATGAAGGTCGACTTCGTATAATTTTCTCTCCTAATTTGAAGATATTGTCCTGGGAATTTTGTACACGCTCTCATGAAATTTTTCTTCGTCGAACTTCTGTTGCACCTCAGGTTTCTGAGTTGGGTAGTGCTGTACGGAATTATCAGTGCTCTATTGATGATAGAGAATCTAATGGTCTTTCATCCCAAGATGTACAAGCTAGCTGCAATAAGATCCTGGAAGCAGGAGGACAAATTGAAAAAGCTTTGAATCTACATGAGGTCGATTATTTGGGATTTTCTAAGAAATACACTCGGTTCTTACAGATAGCTGATGTTGTCGATAGTATGAAAGCTCTAATGACTTTATGTCATAATAAGGGCACTAGCCCACTTGAGAGCCTGAAGAGTTATTGCAAAGGAACTCCCACCAAGCTCCAAAAAAAGAAAATAAGAGGAAAGGGTCAAAAAGAGAGTGCTCAAGGTCTGCCGAAAGACGCGAATAAGTTGATGGCTACATCTTGTGGTCAAATAAAAAGTAATGCAAATCAAAGCTGCTCATCTATCAATACTGAAGGTTTCTCGAATTTGCCAGAATATAACCCCGTTGCGAGCAGAGATAGCAAGTGGCAAACTAGTTTAAACCGGTACACTTCACCATTTGAGGGTCCTAAGACCTCAAATTCAGGACCGTATAAGAATTCAGATGGAAATGGCTTGTTAAATTCAAATTCCTCCATGCAGCAGGATGCCATGCATAACTTAATACAGGAATTTATGAACAGCCGAGCAGTGAATAGGCATGACAGGGACGAAGTCATCTGGGGAAGTGGGAAAAGTTCAGCCGTAGACGTGCCGTCAGGAGTTTGGGGCCGCCCAGCACCTGCAGCTGCTCTAGGAAATGCTTTGGGCAGTATGCCAGTAAGGACCCGTCAATTGCACTCGAATGCTGCCTTTACTAGGAACTTGTCTGAAGTCGGTGGCAGTTTTCATGGAAAGGTTTTATTACCGGAATCAGGCTTCAGTACATCTAATGGTTATCATGGTCACAGTAAGTTTTATGGCAATGACAGTAACCTGAACTATGGTTGGAAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

710

Amino Acids

79.32

Weight (kDa)

8.93

Isoelectric Point (pI)

48.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	219 - 480	2.6e-56	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000883)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08720 FvH4_3g22621 FvH4_4g11702 FvH4_5g01520 FvH4_5g01520 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g36380 FvH4_6g01730 FvH4_6g09170 FvH4_6g20010 FvH4_6g28113
malus_domestica	MD06G1073100.v1.1
prunus_persica	Prupe.2G067700_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.7G013000_v2.0.a1
pyrus_communis	pycom01g10330 pycom06g07250
rosa_chinensis	RchiOBHm_Chr7g0199161 RchiOBHm_Chr7g0199171
rosa_laevigata	RLG00000003809 RLG00000014802
rosa_multiflora	Rmu_sc0004791.1_g000001 Rmu_sc0006115.1_g000003 Rmu_sc0037059.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015450 Rroxscaffold_1G00015460 Rroxscaffold_3G00256990 Rroxscaffold_3G00257000 Rroxscaffold_4G00326050 Rroxscaffold_7G00182010
rosa_rugosa	Rorug03G0005500 Rorug03G0273000 Rorug05G0372800 Rorug05G0372900 Rorug07G0053100
rosa_samantha	Rh1BG202800 Rh1DG102500 Rh3AG101900 Rh3AG320900 Rh3CG107700 Rh3DG355100 Rh7AG176700 Rh7AG176800 Rh7AG365300 Rh7BG180300 Rh7CG185900 Rh7CG186000 Rh7CG384200 Rh7DG179700 Rh7DG179800
rosa_wichuraiana	Rw1G014270 Rw3G028010 Rw7G015540 Rw7G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1924
Acc16I	TGCGCA	1 cut(s)	57
Acc36I	ACCTGC	1 cut(s)	1924
AccB1I	GGYRCC	1 cut(s)	540
AccBSI	CCGCTC	1 cut(s)	1039
AccI	GTMKAC	2 cut(s)	1063, 1881
AccII	CGCG	2 cut(s)	86, 1532
AciI	CCGC	3 cut(s)	871, 1039, 1906
AclWI	GGATC	2 cut(s)	198, 1261
AcoI	YGGCCR	2 cut(s)	689, 839
AcuI	CTGAAG	5 cut(s)	969, 1457, 1626, 2025, 2038
AfaI	GTAC	7 cut(s)	297, 668, 1117, 1188, 1248, 1682, 2059
AfiI	CCNNNNNNNGG	6 cut(s)	503, 717, 759, 1697, 1992, 2048
AgeI	ACCGGT	1 cut(s)	1677
AhdI	GACNNNNNGTC	3 cut(s)	347, 1401, 1888
AhlI	ACTAGT	1 cut(s)	1667
AjiI	CACGTC	1 cut(s)	1885
AjnI	CCWGG	4 cut(s)	637, 954, 1103, 1269
AjuI	GAANNNNNNNTTGG	2 cut(s)	110, 142
AloI	GAACNNNNNNTCC	4 cut(s)	936, 968, 1002, 1034
Alw21I	GWGCWC	2 cut(s)	1205, 1513
Alw26I	GTCTC	1 cut(s)	786
AlwI	GGATC	2 cut(s)	198, 1261
AlwNI	CAGNNNCTG	2 cut(s)	670, 1916
AoxI	GGCC	5 cut(s)	689, 708, 839, 1903, 2127
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AsiGI	ACCGGT	1 cut(s)	1677
Asp700I	GAANNNNTTC	2 cut(s)	897, 1134
AspLEI	GCGC	2 cut(s)	58, 88
AspS9I	GGNCC	5 cut(s)	271, 1700, 1721, 1903, 1959
AsuHPI	GGTGA	2 cut(s)	895, 1680
AsuNHI	GCTAGC	2 cut(s)	259, 1253
AvaII	GGWCC	4 cut(s)	271, 1700, 1721, 1959
AxyI	CCTNAGG	1 cut(s)	1161
BaeGI	GKGCMC	1 cut(s)	1418
BanI	GGYRCC	1 cut(s)	540
BarI	GAAGNNNNNNTAC	2 cut(s)	967, 999
BauI	CACGAG	1 cut(s)	966
Bbv12I	GWGCWC	2 cut(s)	1205, 1513
BbvCI	CCTCAGC	1 cut(s)	255
BccI	CCATC	3 cut(s)	149, 1537, 1733
BceAI	ACGGC	3 cut(s)	826, 1862, 1873
BciT130I	CCWGG	4 cut(s)	639, 956, 1105, 1271
BcoDI	GTCTC	1 cut(s)	786
BcuI	ACTAGT	1 cut(s)	1667
BfaI	CTAG	9 cut(s)	249, 260, 339, 1001, 1254, 1419, 1668, 1928, 1992
BfmI	CTRYAG	2 cut(s)	392, 1917
BfuAI	ACCTGC	1 cut(s)	1924
Bme1390I	CCNGG	4 cut(s)	639, 956, 1105, 1271
Bme18I	GGWCC	4 cut(s)	271, 1700, 1721, 1959
BmeRI	GACNNNNNGTC	3 cut(s)	347, 1401, 1888
BmgBI	CACGTC	1 cut(s)	1885
BmgT120I	GGNCC	5 cut(s)	271, 1700, 1721, 1903, 1959
BmiI	GGNNCC	5 cut(s)	306, 542, 1701, 1904, 1961
BmrFI	CCNGG	4 cut(s)	639, 956, 1105, 1271
BmrI	ACTGGG	1 cut(s)	539
BmsI	GCATC	5 cut(s)	378, 577, 622, 987, 1771
BmtI	GCTAGC	2 cut(s)	263, 1257
BmuI	ACTGGG	1 cut(s)	539
Bpu10I	CCTNAGC	1 cut(s)	255
BpuEI	CTTGAG	2 cut(s)	1448, 1497
BsaAI	YACGTR	1 cut(s)	434
BsaBI	GATNNNNATC	2 cut(s)	195, 351
BsaI	GGTCTC	1 cut(s)	786
BsaJI	CCNNGG	3 cut(s)	802, 902, 1104
BsaWI	WCCGGW	2 cut(s)	1677, 2041
Bsc4I	CCNNNNNNNGG	6 cut(s)	503, 717, 759, 1697, 1992, 2048
Bse118I	RCCGGY	1 cut(s)	1677
Bse1I	ACTGG	3 cut(s)	348, 545, 1952
Bse21I	CCTNAGG	1 cut(s)	1161
Bse3DI	GCAATG	4 cut(s)	239, 536, 633, 2104
Bse8I	GATNNNNATC	2 cut(s)	195, 351
BseBI	CCWGG	4 cut(s)	639, 956, 1105, 1271
BseDI	CCNNGG	3 cut(s)	802, 902, 1104
BseGI	GGATG	4 cut(s)	352, 540, 1235, 1786
BseJI	GATNNNNATC	2 cut(s)	195, 351
BseLI	CCNNNNNNNGG	6 cut(s)	503, 717, 759, 1697, 1992, 2048
BseMI	GCAATG	4 cut(s)	239, 536, 633, 2104
BseMII	CTCAG	3 cut(s)	269, 1161, 1175
BseNI	ACTGG	3 cut(s)	348, 545, 1952
BseSI	GKGCMC	1 cut(s)	1418
BseYI	CCCAGC	1 cut(s)	1909
Bsh1236I	CGCG	2 cut(s)	86, 1532
BshFI	GGCC	5 cut(s)	691, 710, 841, 1905, 2129
BshNI	GGYRCC	1 cut(s)	540
BshTI	ACCGGT	1 cut(s)	1677
BsiHKAI	GWGCWC	2 cut(s)	1205, 1513
BsiSI	CCGG	2 cut(s)	1678, 2042
BslFI	GGGAC	1 cut(s)	1856
BslI	CCNNNNNNNGG	6 cut(s)	503, 717, 759, 1697, 1992, 2048
BsmAI	GTCTC	1 cut(s)	786
BsmFI	GGGAC	1 cut(s)	1856
BsmI	GAATGC	3 cut(s)	16, 493, 1984
BsnI	GGCC	5 cut(s)	691, 710, 841, 1905, 2129
Bso31I	GGTCTC	1 cut(s)	786
Bsp1286I	GDGCHC	3 cut(s)	1205, 1418, 1513
Bsp1407I	TGTACA	3 cut(s)	295, 1115, 1246
Bsp143I	GATC	4 cut(s)	190, 424, 469, 1266
BspACI	CCGC	3 cut(s)	871, 1039, 1906
BspANI	GGCC	5 cut(s)	691, 710, 841, 1905, 2129
BspCNI	CTCAG	3 cut(s)	268, 1162, 1174
BspFNI	CGCG	2 cut(s)	86, 1532
BspHI	TCATGA	2 cut(s)	1054, 1126
BspLI	GGNNCC	5 cut(s)	306, 542, 1701, 1904, 1961
BspMAI	CTGCAG	2 cut(s)	396, 1921
BspMI	ACCTGC	1 cut(s)	1924
BspOI	GCTAGC	2 cut(s)	263, 1257
BspPI	GGATC	2 cut(s)	198, 1261
BspQI	GCTCTTC	2 cut(s)	222, 1006
BspT107I	GGYRCC	1 cut(s)	540
BspTNI	GGTCTC	1 cut(s)	786
BsrBI	CCGCTC	1 cut(s)	1039
BsrDI	GCAATG	4 cut(s)	239, 536, 633, 2104
BsrFI	RCCGGY	1 cut(s)	1677
BsrGI	TGTACA	3 cut(s)	295, 1115, 1246
BsrI	ACTGG	3 cut(s)	348, 545, 1952
BssAI	RCCGGY	1 cut(s)	1677
BssECI	CCNNGG	3 cut(s)	802, 902, 1104
BssMI	GATC	4 cut(s)	190, 424, 469, 1266
BssSI	CACGAG	1 cut(s)	966
BssT1I	CCWWGG	2 cut(s)	802, 902
Bst2BI	CACGAG	1 cut(s)	966
Bst2UI	CCWGG	4 cut(s)	639, 956, 1105, 1271
Bst4CI	ACNGT	5 cut(s)	501, 948, 1725, 2084, 2105
Bst6I	CTCTTC	4 cut(s)	148, 222, 1006, 1433
BstAUI	TGTACA	3 cut(s)	295, 1115, 1246
BstBAI	YACGTR	1 cut(s)	434
BstC8I	GCNNGC	6 cut(s)	133, 261, 477, 588, 1255, 1645
BstDEI	CTNAG	7 cut(s)	36, 255, 908, 1161, 1170, 1335, 1704
BstENI	CCTNNNNNAGG	2 cut(s)	715, 1990
BstF5I	GGATG	4 cut(s)	352, 540, 1235, 1786
BstFNI	CGCG	2 cut(s)	86, 1532
BstHHI	GCGC	2 cut(s)	58, 88
BstKTI	GATC	4 cut(s)	193, 427, 472, 1269
BstMAI	GTCTC	1 cut(s)	786
BstMBI	GATC	4 cut(s)	190, 424, 469, 1266
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 229, 587, 904, 1653, 1919
BstNI	CCWGG	4 cut(s)	639, 956, 1105, 1271
BstNSI	RCATGY	1 cut(s)	377
BstSCI	CCNGG	4 cut(s)	637, 954, 1103, 1269
BstSFI	CTRYAG	2 cut(s)	392, 1917
BstSLI	GKGCMC	1 cut(s)	1418
BstUI	CGCG	2 cut(s)	86, 1532
BstX2I	RGATCY	1 cut(s)	1266
BstXI	CCANNNNNNTGG	1 cut(s)	803
BstYI	RGATCY	1 cut(s)	1266
Bsu36I	CCTNAGG	1 cut(s)	1161
BsuRI	GGCC	5 cut(s)	691, 710, 841, 1905, 2129
BtrI	CACGTC	1 cut(s)	1885
BtsCI	GGATG	4 cut(s)	352, 540, 1235, 1786
BtsI	GCAGTG	2 cut(s)	243, 1830
BtsIMutI	CAGTG	4 cut(s)	14, 243, 1205, 1830
BveI	ACCTGC	1 cut(s)	1924
Cac8I	GCNNGC	6 cut(s)	133, 261, 477, 588, 1255, 1645
CaiI	CAGNNNCTG	2 cut(s)	670, 1916
CciI	TCATGA	2 cut(s)	1054, 1126
CfoI	GCGC	2 cut(s)	58, 88
Cfr10I	RCCGGY	1 cut(s)	1677
Cfr13I	GGNCC	5 cut(s)	271, 1700, 1721, 1903, 1959
CseI	GACGC	3 cut(s)	92, 827, 1538
Csp6I	GTAC	7 cut(s)	296, 667, 1116, 1187, 1247, 1681, 2058
CspAI	ACCGGT	1 cut(s)	1677
CviQI	GTAC	7 cut(s)	296, 667, 1116, 1187, 1247, 1681, 2058
DdeI	CTNAG	7 cut(s)	36, 255, 908, 1161, 1170, 1335, 1704
DpnI	GATC	4 cut(s)	192, 426, 471, 1268
DpnII	GATC	4 cut(s)	190, 424, 469, 1266
DraI	TTTAAA	1 cut(s)	1674
DriI	GACNNNNNGTC	3 cut(s)	347, 1401, 1888
EaeI	YGGCCR	2 cut(s)	689, 839
Eam1104I	CTCTTC	4 cut(s)	148, 222, 1006, 1433
Eam1105I	GACNNNNNGTC	3 cut(s)	347, 1401, 1888
EarI	CTCTTC	4 cut(s)	148, 222, 1006, 1433
Eco130I	CCWWGG	2 cut(s)	802, 902
Eco147I	AGGCCT	1 cut(s)	2129
Eco31I	GGTCTC	1 cut(s)	786
Eco47I	GGWCC	4 cut(s)	271, 1700, 1721, 1959
Eco57I	CTGAAG	5 cut(s)	969, 1457, 1626, 2025, 2038
Eco81I	CCTNAGG	1 cut(s)	1161
EcoNI	CCTNNNNNAGG	2 cut(s)	715, 1990
EcoO109I	RGGNCCY	2 cut(s)	1700, 1959
EcoRI	GAATTC	2 cut(s)	31, 1732
EcoRII	CCWGG	4 cut(s)	637, 954, 1103, 1269
EcoT14I	CCWWGG	2 cut(s)	802, 902
EcoT22I	ATGCAT	1 cut(s)	1791
ErhI	CCWWGG	2 cut(s)	802, 902
FalI	AAGNNNNNCTT	2 cut(s)	1050, 1082
FaqI	GGGAC	1 cut(s)	1856
FauI	CCCGC	1 cut(s)	864
FauNDI	CATATG	1 cut(s)	851
FblI	GTMKAC	2 cut(s)	1063, 1881
FokI	GGATG	4 cut(s)	359, 547, 1222, 1793
FspBI	CTAG	9 cut(s)	249, 260, 339, 1001, 1254, 1419, 1668, 1928, 1992
FspI	TGCGCA	1 cut(s)	57
GlaI	GCGC	2 cut(s)	57, 87
GsaI	CCCAGC	1 cut(s)	1913
HaeIII	GGCC	5 cut(s)	691, 710, 841, 1905, 2129
HapII	CCGG	2 cut(s)	1678, 2042
HgaI	GACGC	3 cut(s)	92, 827, 1538
HhaI	GCGC	2 cut(s)	58, 88
Hin6I	GCGC	2 cut(s)	56, 86
HinP1I	GCGC	2 cut(s)	56, 86
HincII	GTYRAC	1 cut(s)	1064
HindII	GTYRAC	1 cut(s)	1064
HindIII	AAGCTT	1 cut(s)	1296
HinfI	GANTC	4 cut(s)	413, 1220, 1303, 2045
HpaII	CCGG	2 cut(s)	1678, 2042
HphI	GGTGA	2 cut(s)	895, 1680
Hpy166II	GTNNAC	7 cut(s)	296, 367, 650, 1064, 1118, 1683, 1882
Hpy188I	TCNGA	7 cut(s)	30, 64, 418, 1023, 1171, 1738, 2005
Hpy8I	GTNNAC	7 cut(s)	296, 367, 650, 1064, 1118, 1683, 1882
Hpy99I	CGWCG	2 cut(s)	821, 1146
HpyAV	CCTTC	6 cut(s)	262, 601, 753, 1052, 1601, 2119
HpyCH4III	ACNGT	5 cut(s)	501, 948, 1725, 2084, 2105
HpyCH4IV	ACGT	2 cut(s)	433, 1884
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 229, 587, 904, 1653, 1919
HpyF3I	CTNAG	7 cut(s)	36, 255, 908, 1161, 1170, 1335, 1704
HpySE526I	ACGT	2 cut(s)	433, 1884
HspAI	GCGC	2 cut(s)	56, 86
Kzo9I	GATC	4 cut(s)	190, 424, 469, 1266
LguI	GCTCTTC	2 cut(s)	222, 1006
LmnI	GCTCC	3 cut(s)	206, 499, 1473
LweI	GCATC	5 cut(s)	378, 577, 622, 987, 1771
MaeI	CTAG	9 cut(s)	249, 260, 339, 1001, 1254, 1419, 1668, 1928, 1992
MaeII	ACGT	2 cut(s)	433, 1884
MaeIII	GTNAC	3 cut(s)	916, 2078, 2105
MalI	GATC	4 cut(s)	192, 426, 471, 1268
MbiI	CCGCTC	1 cut(s)	1039
MboI	GATC	4 cut(s)	190, 424, 469, 1266
MboII	GAAGA	9 cut(s)	135, 153, 239, 397, 975, 1023, 1105, 1130, 1450
MfeI	CAATTG	2 cut(s)	147, 1967
MflI	RGATCY	1 cut(s)	1266
MhlI	GDGCHC	3 cut(s)	1205, 1418, 1513
MmeI	TCCRAC	2 cut(s)	769, 2102
Mph1103I	ATGCAT	1 cut(s)	1791
MroXI	GAANNNNTTC	2 cut(s)	897, 1134
MseI	TTAA	5 cut(s)	288, 659, 1673, 1754, 1796
MslI	CAYNNNNRTG	2 cut(s)	841, 1977
MspA1I	CMGCKG	2 cut(s)	526, 1922
MspI	CCGG	2 cut(s)	1678, 2042
MspR9I	CCNGG	4 cut(s)	639, 956, 1105, 1271
MssI	GTTTAAAC	1 cut(s)	1674
MunI	CAATTG	2 cut(s)	147, 1967
Mva1269I	GAATGC	3 cut(s)	16, 493, 1984
MvaI	CCWGG	4 cut(s)	639, 956, 1105, 1271
MvnI	CGCG	2 cut(s)	86, 1532
MwoI	GCNNNNNNNGC	6 cut(s)	104, 229, 587, 904, 1653, 1919
NdeI	CATATG	1 cut(s)	851
NdeII	GATC	4 cut(s)	190, 424, 469, 1266
NheI	GCTAGC	2 cut(s)	259, 1253
NlaIV	GGNNCC	5 cut(s)	306, 542, 1701, 1904, 1961
NmeAIII	GCCGAG	2 cut(s)	667, 1844
NmuCI	GTSAC	1 cut(s)	2078
NsbI	TGCGCA	1 cut(s)	57
NsiI	ATGCAT	1 cut(s)	1791
NspI	RCATGY	1 cut(s)	377
PagI	TCATGA	2 cut(s)	1054, 1126
PaqCI	CACCTGC	1 cut(s)	1924
PceI	AGGCCT	1 cut(s)	2129
PciSI	GCTCTTC	2 cut(s)	222, 1006
PctI	GAATGC	3 cut(s)	16, 493, 1984
PdmI	GAANNNNTTC	2 cut(s)	897, 1134
PfeI	GAWTC	4 cut(s)	413, 1220, 1303, 2045
PflFI	GACNNNGTC	1 cut(s)	1847
PfoI	TCCNGGA	2 cut(s)	954, 1269
PinAI	ACCGGT	1 cut(s)	1677
PmeI	GTTTAAAC	1 cut(s)	1674
Ppu21I	YACGTR	1 cut(s)	434
PpuMI	RGGWCCY	2 cut(s)	1700, 1959
Psp5II	RGGWCCY	2 cut(s)	1700, 1959
Psp6I	CCWGG	4 cut(s)	637, 954, 1103, 1269
PspFI	CCCAGC	1 cut(s)	1909
PspGI	CCWGG	4 cut(s)	637, 954, 1103, 1269
PspN4I	GGNNCC	5 cut(s)	306, 542, 1701, 1904, 1961
PspPI	GGNCC	5 cut(s)	271, 1700, 1721, 1903, 1959
PspPPI	RGGWCCY	2 cut(s)	1700, 1959
PstI	CTGCAG	2 cut(s)	396, 1921
PstNI	CAGNNNCTG	2 cut(s)	670, 1916
PsuI	RGATCY	1 cut(s)	1266
PsyI	GACNNNGTC	1 cut(s)	1847
PvuII	CAGCTG	2 cut(s)	526, 1922
RsaI	GTAC	7 cut(s)	297, 668, 1117, 1188, 1248, 1682, 2059
RsaNI	GTAC	7 cut(s)	296, 667, 1116, 1187, 1247, 1681, 2058
RseI	CAYNNNNRTG	2 cut(s)	841, 1977
SalI	GTCGAC	1 cut(s)	1062
SapI	GCTCTTC	2 cut(s)	222, 1006
SaqAI	TTAA	5 cut(s)	288, 659, 1673, 1754, 1796
Sau3AI	GATC	4 cut(s)	190, 424, 469, 1266
Sau96I	GGNCC	5 cut(s)	271, 1700, 1721, 1903, 1959
ScrFI	CCNGG	4 cut(s)	639, 956, 1105, 1271
SduI	GDGCHC	3 cut(s)	1205, 1418, 1513
SfaNI	GCATC	5 cut(s)	378, 577, 622, 987, 1771
SfcI	CTRYAG	2 cut(s)	392, 1917
SinI	GGWCC	4 cut(s)	271, 1700, 1721, 1959
SmiMI	CAYNNNNRTG	2 cut(s)	841, 1977
SmlI	CTYRAG	2 cut(s)	1427, 1512
SmoI	CTYRAG	2 cut(s)	1427, 1512
SpeI	ACTAGT	1 cut(s)	1667
SseBI	AGGCCT	1 cut(s)	2129
SsiI	CCGC	3 cut(s)	871, 1039, 1906
SspMI	CTAG	9 cut(s)	249, 260, 339, 1001, 1254, 1419, 1668, 1928, 1992
StuI	AGGCCT	1 cut(s)	2129
StyD4I	CCNGG	4 cut(s)	637, 954, 1103, 1269
StyI	CCWWGG	2 cut(s)	802, 902
TaaI	ACNGT	5 cut(s)	501, 948, 1725, 2084, 2105
TaiI	ACGT	2 cut(s)	436, 1887
TaqI	TCGA	7 cut(s)	682, 1063, 1144, 1317, 1374, 1616, 1976
TatI	WGTACW	4 cut(s)	295, 1115, 1246, 2057
TauI	GCSGC	2 cut(s)	1042, 1908
TfiI	GAWTC	4 cut(s)	413, 1220, 1303, 2045
Tru1I	TTAA	5 cut(s)	288, 659, 1673, 1754, 1796
Tru9I	TTAA	5 cut(s)	288, 659, 1673, 1754, 1796
TscAI	CASTG	4 cut(s)	21, 250, 1205, 1830
TseFI	GTSAC	1 cut(s)	2078
Tsp45I	GTSAC	1 cut(s)	2078
TspDTI	ATGAA	8 cut(s)	957, 1043, 1071, 1143, 1224, 1397, 1826, 2012
TspGWI	ACGGA	2 cut(s)	304, 1204
TspRI	CASTG	4 cut(s)	21, 250, 1205, 1830
Tth111I	GACNNNGTC	1 cut(s)	1847
VpaK11BI	GGWCC	4 cut(s)	271, 1700, 1721, 1959
XagI	CCTNNNNNAGG	2 cut(s)	715, 1990
XceI	RCATGY	1 cut(s)	377
XmiI	GTMKAC	2 cut(s)	1063, 1881
XmnI	GAANNNNTTC	2 cut(s)	897, 1134
XspI	CTAG	9 cut(s)	249, 260, 339, 1001, 1254, 1419, 1668, 1928, 1992
Zsp2I	ATGCAT	1 cut(s)	1791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.