FvH4_6g09170
MYB Family

DDE superfamily endonuclease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000883
Physical Location & Seq
Reverse (-)
5456390 .. 5456857
468 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g09170.t1

Sequence Viewer

Length: 468 bp
ATGGTTTGCGGGGGTGACAATAGACGCAACCTTAATAAAGATACTGCTAGATTATACGATAAGCCGTTTCGGCATTATTATATTCTTGGAGAAATATATGATAGAGATCGTCCAAATGGAATGAATGTTGGAAATGCGGATGATGATGAAAAGGAAATTGCGCGTGAGAACACTAATGCTGATGATTTCAATTTAGATGATGACATTCTCTTTGGCAATGTCAACCCAATTGGTGATATGGGATCACAACATGGAGGAGTTCAGGATGTTGATGCTTCCTTTATAGAGCCAAGTGCCCCACAACAGATGCCTACACAAAGTGCTTCTTCCAATAATAGTCGTCGGAAAGGAAAAACATTGAATGAAATGAGTAAGAACTTTGGTCTTATGGCAAAAGCTGTGGCTGGGATGGCACCTAAGCTTGATGGATTGGTCAACATTTTATCCACAGACAAGGAGTCAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DDE_Tnp_4 Myb_DNA-bind_3

Protein Analysis

156

Amino Acids

17.04

Weight (kDa)

4.78

Isoelectric Point (pI)

53.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 412
AccII CGCG 1 cut(s) 163
AciI CCGC 2 cut(s) 9, 137
AclWI GGATC 1 cut(s) 250
AdeI CACNNNGTG 1 cut(s) 320
AgsI TTSAA 2 cut(s) 190, 361
AhdI GACNNNNNGTC 1 cut(s) 457
AluBI AGCT 2 cut(s) 398, 421
AluI AGCT 2 cut(s) 398, 421
AlwI GGATC 1 cut(s) 250
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
AspLEI GCGC 1 cut(s) 163
AsuHPI GGTGA 2 cut(s) 26, 245
BaeGI GKGCMC 1 cut(s) 298
BanI GGYRCC 1 cut(s) 412
BccI CCATC 2 cut(s) 403, 419
BceAI ACGGC 1 cut(s) 49
BfaI CTAG 1 cut(s) 48
BglI GCCNNNNNGGC 1 cut(s) 70
BmeRI GACNNNNNGTC 1 cut(s) 457
BmiI GGNNCC 1 cut(s) 414
BmsI GCATC 2 cut(s) 262, 297
Bpu10I CCTNAGC 1 cut(s) 417
BsaBI GATNNNNATC 1 cut(s) 105
Bse3DI GCAATG 1 cut(s) 223
Bse8I GATNNNNATC 1 cut(s) 105
BseGI GGATG 3 cut(s) 145, 271, 414
BseJI GATNNNNATC 1 cut(s) 105
BseMI GCAATG 1 cut(s) 223
BseRI GAGGAG 1 cut(s) 270
BseSI GKGCMC 1 cut(s) 298
BseYI CCCAGC 1 cut(s) 404
Bsh1236I CGCG 1 cut(s) 163
BshNI GGYRCC 1 cut(s) 412
Bsp1286I GDGCHC 1 cut(s) 298
Bsp143I GATC 2 cut(s) 106, 242
BspACI CCGC 2 cut(s) 9, 137
BspFNI CGCG 1 cut(s) 163
BspLI GGNNCC 1 cut(s) 414
BspPI GGATC 1 cut(s) 250
BspT107I GGYRCC 1 cut(s) 412
BsrDI GCAATG 1 cut(s) 223
BssMI GATC 2 cut(s) 106, 242
BstDEI CTNAG 1 cut(s) 417
BstF5I GGATG 3 cut(s) 145, 271, 414
BstFNI CGCG 1 cut(s) 163
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 2 cut(s) 109, 245
BstMBI GATC 2 cut(s) 106, 242
BstMWI GCNNNNNNNGC 2 cut(s) 70, 410
BstSLI GKGCMC 1 cut(s) 298
BstUI CGCG 1 cut(s) 163
BtsCI GGATG 3 cut(s) 145, 271, 414
CfoI GCGC 1 cut(s) 163
CseI GACGC 1 cut(s) 33
CspCI CAANNNNNGTGG 2 cut(s) 381, 416
CviAII CATG 1 cut(s) 251
CviJI RGCY 5 cut(s) 64, 289, 398, 404, 421
CviKI_1 RGCY 5 cut(s) 64, 289, 398, 404, 421
DdeI CTNAG 1 cut(s) 417
DpnI GATC 2 cut(s) 108, 244
DpnII GATC 2 cut(s) 106, 242
DraIII CACNNNGTG 1 cut(s) 320
DriI GACNNNNNGTC 1 cut(s) 457
Eam1105I GACNNNNNGTC 1 cut(s) 457
FaeI CATG 1 cut(s) 254
FaiI YATR 8 cut(s) 55, 81, 97, 99, 239, 252, 284, 389
FalI AAGNNNNNCTT 2 cut(s) 310, 342
FatI CATG 1 cut(s) 250
FauI CCCGC 1 cut(s) 2
FokI GGATG 3 cut(s) 152, 278, 421
FspBI CTAG 1 cut(s) 48
GlaI GCGC 1 cut(s) 162
GsaI CCCAGC 1 cut(s) 408
HgaI GACGC 1 cut(s) 33
HhaI GCGC 1 cut(s) 163
Hin1II CATG 1 cut(s) 254
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HincII GTYRAC 2 cut(s) 223, 436
HindII GTYRAC 2 cut(s) 223, 436
HindIII AAGCTT 1 cut(s) 419
HinfI GANTC 1 cut(s) 458
HphI GGTGA 2 cut(s) 26, 245
Hpy166II GTNNAC 2 cut(s) 223, 436
Hpy188I TCNGA 1 cut(s) 345
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 2 cut(s) 223, 436
Hpy99I CGWCG 1 cut(s) 345
HpyF10VI GCNNNNNNNGC 2 cut(s) 70, 410
HpyF3I CTNAG 1 cut(s) 417
Hsp92II CATG 1 cut(s) 254
HspAI GCGC 1 cut(s) 161
Kzo9I GATC 2 cut(s) 106, 242
LpnPI CCDG 2 cut(s) 248, 390
LweI GCATC 2 cut(s) 262, 297
MaeI CTAG 1 cut(s) 48
MaeIII GTNAC 1 cut(s) 14
MalI GATC 2 cut(s) 108, 244
MboI GATC 2 cut(s) 106, 242
MboII GAAGA 1 cut(s) 318
MfeI CAATTG 1 cut(s) 228
MhlI GDGCHC 1 cut(s) 298
MluCI AATT 3 cut(s) 156, 190, 228
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 2 cut(s) 109, 323
MnlI CCTC 1 cut(s) 248
MseI TTAA 1 cut(s) 33
MunI CAATTG 1 cut(s) 228
MvnI CGCG 1 cut(s) 163
MwoI GCNNNNNNNGC 2 cut(s) 70, 410
NdeII GATC 2 cut(s) 106, 242
NlaIII CATG 1 cut(s) 254
NlaIV GGNNCC 1 cut(s) 414
NmuCI GTSAC 1 cut(s) 14
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
PspFI CCCAGC 1 cut(s) 404
PspN4I GGNNCC 1 cut(s) 414
SaqAI TTAA 1 cut(s) 33
Sau3AI GATC 2 cut(s) 106, 242
SchI GAGTC 1 cut(s) 467
SduI GDGCHC 1 cut(s) 298
SetI ASST 4 cut(s) 33, 400, 418, 423
SfaNI GCATC 2 cut(s) 262, 297
Sse9I AATT 3 cut(s) 156, 190, 228
SsiI CCGC 2 cut(s) 9, 137
SspMI CTAG 1 cut(s) 48
TasI AATT 3 cut(s) 156, 190, 228
Tru1I TTAA 1 cut(s) 33
Tru9I TTAA 1 cut(s) 33
TseFI GTSAC 1 cut(s) 14
Tsp45I GTSAC 1 cut(s) 14
TspDTI ATGAA 3 cut(s) 137, 162, 378
XspI CTAG 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.