Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000883

Physical Location & Seq

Genomic Coordinates Forward (+)

930667 .. 933604

Gene Structure 2938 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g01520.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGATGATTTCCAATTCAACTACAAAACAAAGAGGAAGGGGCCAGAATAAGCGTTTCTGGACAACCAAGGAGGATTCTGCATTAGTTGAATCTTTGCAAGGATTGTATCGTGACACCAAGTGGCGATCTGAAAATGGATTTAAGAATGGTTATTTGACCCAGGTAGAGGCTATGATGGAATCCAAAATGCCAGGTTGTGGAATACAGGCCTCTCCCCACATTGAATCACGAATTAAAACTTTGAAGAAAAAGTACTATGCCTTGGCTGAGATGTTATCTCAGAGCGGGTTTGGTTGGAATGATGATGAAATGATGTTGGTCTGTGAAAAAAGGGTTTATGATGAATGGATCCAGAATAGAAAGTATGCAAGTGGATTGTATGGTAAGCCATTTCCATACTACTATACGTTGGGGGAGATATATGGAAAAGCTCGTGAAGTTGGTGCATATATTGATAATGCTGATGATGACCAAGAAGAATTTAGACAGAAGGATCAGGAGGCAAATATTGATCAAATTTTAGGCGTGAACATTGATGATGCCGCTGGAAATCTGAATCTGAATGTGGAATCACAATCTGAGGGGTCTGAAGAATTTGATGTATCATGCACACTTGGTACCCCAAGTGCCCAACAACGAAGACCTACACAAAGTGCCCCAAGTGTTTCAGATTATGGTCGTAGGGTGAAAGCAAAGGTTTTGGAGGAGATGAGTAAGAATGTAAGCACAATGTCCTCTAAGATTGATGCTTTTGTTAATATCTTTTCAATTGACAAGGAAGTGGCTGAATTGCAAGCAAAACTTGATAGCGAGTTGAACAAGATCGAAGGCCTTACTGCATTGCAAGTCTTTCGAGCCACAAACATTTTAGCTCGTCAACATGACCTGCTGAGAGTGTTCTTCGGCATGTCTGAGGAAAGAAAACAGACATATGTTACACATCTGCTGGAACATGGCGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

321

Amino Acids

36.41

Weight (kDa)

5.49

Isoelectric Point (pI)

61.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-bind_3	PF12776	20 - 115	3.6e-08	Myb/SANT-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000883)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08720 FvH4_3g22621 FvH4_4g11702 FvH4_5g01520 FvH4_5g01520 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g36380 FvH4_6g01730 FvH4_6g09170 FvH4_6g20010 FvH4_6g28113
malus_domestica	MD06G1073100.v1.1
prunus_persica	Prupe.2G067700_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.7G013000_v2.0.a1
pyrus_communis	pycom01g10330 pycom06g07250
rosa_chinensis	RchiOBHm_Chr7g0199161 RchiOBHm_Chr7g0199171
rosa_laevigata	RLG00000003809 RLG00000014802
rosa_multiflora	Rmu_sc0004791.1_g000001 Rmu_sc0006115.1_g000003 Rmu_sc0037059.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015450 Rroxscaffold_1G00015460 Rroxscaffold_3G00256990 Rroxscaffold_3G00257000 Rroxscaffold_4G00326050 Rroxscaffold_7G00182010
rosa_rugosa	Rorug03G0005500 Rorug03G0273000 Rorug05G0372800 Rorug05G0372900 Rorug07G0053100
rosa_samantha	Rh1BG202800 Rh1DG102500 Rh3AG101900 Rh3AG320900 Rh3CG107700 Rh3DG355100 Rh7AG176700 Rh7AG176800 Rh7AG365300 Rh7BG180300 Rh7CG185900 Rh7CG186000 Rh7CG384200 Rh7DG179700 Rh7DG179800
rosa_wichuraiana	Rw1G014270 Rw3G028010 Rw7G015540 Rw7G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	894
Acc65I	GGTACC	1 cut(s)	617
AccB1I	GGYRCC	1 cut(s)	617
AccB7I	CCANNNNNTGG	1 cut(s)	197
AccBSI	CCGCTC	1 cut(s)	285
AciI	CCGC	2 cut(s)	285, 543
AclWI	GGATC	3 cut(s)	343, 356, 501
AcsI	RAATTY	3 cut(s)	479, 516, 593
AcuI	CTGAAG	1 cut(s)	609
AdeI	CACNNNGTG	2 cut(s)	120, 653
AfaI	GTAC	2 cut(s)	254, 619
AfiI	CCNNNNNNNGG	2 cut(s)	166, 197
AgsI	TTSAA	6 cut(s)	18, 89, 224, 244, 768, 817
AjnI	CCWGG	2 cut(s)	159, 190
AluBI	AGCT	2 cut(s)	431, 872
AluI	AGCT	2 cut(s)	431, 872
AlwI	GGATC	3 cut(s)	343, 356, 501
AoxI	GGCC	3 cut(s)	40, 207, 829
ApoI	RAATTY	3 cut(s)	479, 516, 593
Asp718I	GGTACC	1 cut(s)	617
AspS9I	GGNCC	1 cut(s)	40
AsuHPI	GGTGA	1 cut(s)	697
BaeGI	GKGCMC	2 cut(s)	631, 658
BamHI	GGATCC	1 cut(s)	348
BanI	GGYRCC	1 cut(s)	617
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BauI	CACGAG	1 cut(s)	432
BbsI	GAAGAC	1 cut(s)	646
BccI	CCATC	1 cut(s)	169
BcgI	CGANNNNNNTGC	2 cut(s)	833, 867
BciT130I	CCWGG	2 cut(s)	161, 192
BclI	TGATCA	1 cut(s)	511
BfuAI	ACCTGC	1 cut(s)	894
BisI	GCNGC	1 cut(s)	543
BlsI	GCNGC	1 cut(s)	544
BmcAI	AGTACT	1 cut(s)	254
Bme1390I	CCNGG	2 cut(s)	161, 192
BmgT120I	GGNCC	1 cut(s)	40
BmiI	GGNNCC	3 cut(s)	41, 350, 619
BmrFI	CCNGG	2 cut(s)	161, 192
BmsI	GCATC	2 cut(s)	529, 736
BpiI	GAAGAC	1 cut(s)	646
BsaJI	CCNNGG	3 cut(s)	66, 159, 261
Bsc4I	CCNNNNNNNGG	2 cut(s)	166, 197
Bse3DI	GCAATG	1 cut(s)	839
BseBI	CCWGG	2 cut(s)	161, 192
BseDI	CCNNGG	3 cut(s)	66, 159, 261
BseLI	CCNNNNNNNGG	2 cut(s)	166, 197
BseMI	GCAATG	1 cut(s)	839
BseMII	CTCAG	5 cut(s)	258, 293, 570, 881, 903
BseRI	GAGGAG	1 cut(s)	719
BseSI	GKGCMC	2 cut(s)	631, 658
BshFI	GGCC	3 cut(s)	42, 209, 831
BshNI	GGYRCC	1 cut(s)	617
BslI	CCNNNNNNNGG	2 cut(s)	166, 197
BsnI	GGCC	3 cut(s)	42, 209, 831
Bsp1286I	GDGCHC	2 cut(s)	631, 658
Bsp143I	GATC	5 cut(s)	125, 348, 493, 511, 822
BspACI	CCGC	2 cut(s)	285, 543
BspANI	GGCC	3 cut(s)	42, 209, 831
BspCNI	CTCAG	5 cut(s)	259, 292, 571, 882, 904
BspLI	GGNNCC	3 cut(s)	41, 350, 619
BspMI	ACCTGC	1 cut(s)	894
BspPI	GGATC	3 cut(s)	343, 356, 501
BspT107I	GGYRCC	1 cut(s)	617
BsrBI	CCGCTC	1 cut(s)	285
BsrDI	GCAATG	1 cut(s)	839
BssECI	CCNNGG	3 cut(s)	66, 159, 261
BssMI	GATC	5 cut(s)	125, 348, 493, 511, 822
BssSI	CACGAG	1 cut(s)	432
BssT1I	CCWWGG	2 cut(s)	66, 261
Bst2BI	CACGAG	1 cut(s)	432
Bst2UI	CCWGG	2 cut(s)	161, 192
BstC8I	GCNNGC	1 cut(s)	795
BstDEI	CTNAG	6 cut(s)	267, 279, 579, 738, 890, 912
BstKTI	GATC	5 cut(s)	128, 351, 496, 514, 825
BstMBI	GATC	5 cut(s)	125, 348, 493, 511, 822
BstNI	CCWGG	2 cut(s)	161, 192
BstNSI	RCATGY	1 cut(s)	910
BstSCI	CCNGG	2 cut(s)	159, 190
BstSLI	GKGCMC	2 cut(s)	631, 658
BstV2I	GAAGAC	1 cut(s)	646
BstX2I	RGATCY	1 cut(s)	348
BstYI	RGATCY	1 cut(s)	348
BsuRI	GGCC	3 cut(s)	42, 209, 831
BveI	ACCTGC	1 cut(s)	894
Cac8I	GCNNGC	1 cut(s)	795
Cfr13I	GGNCC	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	253, 618
CviAII	CATG	4 cut(s)	606, 881, 907, 953
CviQI	GTAC	2 cut(s)	253, 618
DdeI	CTNAG	6 cut(s)	267, 279, 579, 738, 890, 912
DpnI	GATC	5 cut(s)	127, 350, 495, 513, 824
DpnII	GATC	5 cut(s)	125, 348, 493, 511, 822
DraIII	CACNNNGTG	2 cut(s)	120, 653
Eco130I	CCWWGG	2 cut(s)	66, 261
Eco147I	AGGCCT	2 cut(s)	209, 831
Eco57I	CTGAAG	1 cut(s)	609
EcoRII	CCWGG	2 cut(s)	159, 190
EcoT14I	CCWWGG	2 cut(s)	66, 261
ErhI	CCWWGG	2 cut(s)	66, 261
FaeI	CATG	4 cut(s)	609, 884, 910, 956
FalI	AAGNNNNNCTT	2 cut(s)	786, 818
FatI	CATG	4 cut(s)	605, 880, 906, 952
FauI	CCCGC	1 cut(s)	278
FauNDI	CATATG	1 cut(s)	931
FbaI	TGATCA	1 cut(s)	511
Fnu4HI	GCNGC	1 cut(s)	543
Fsp4HI	GCNGC	1 cut(s)	543
GluI	GCNGC	1 cut(s)	543
HaeIII	GGCC	3 cut(s)	42, 209, 831
Hin1II	CATG	4 cut(s)	609, 884, 910, 956
HincII	GTYRAC	1 cut(s)	878
HindII	GTYRAC	1 cut(s)	878
HinfI	GANTC	6 cut(s)	74, 89, 179, 224, 556, 569
HphI	GGTGA	1 cut(s)	697
Hpy166II	GTNNAC	2 cut(s)	529, 878
Hpy188I	TCNGA	8 cut(s)	130, 282, 555, 561, 580, 589, 670, 913
Hpy188III	TCNNGA	6 cut(s)	58, 110, 228, 352, 434, 497
Hpy8I	GTNNAC	2 cut(s)	529, 878
HpyAV	CCTTC	3 cut(s)	30, 484, 821
HpyCH4IV	ACGT	1 cut(s)	407
HpyCH4V	TGCA	8 cut(s)	80, 97, 368, 446, 609, 793, 839, 844
HpyF3I	CTNAG	6 cut(s)	267, 279, 579, 738, 890, 912
HpySE526I	ACGT	1 cut(s)	407
Hsp92II	CATG	4 cut(s)	609, 884, 910, 956
KpnI	GGTACC	1 cut(s)	621
Ksp22I	TGATCA	1 cut(s)	511
Kzo9I	GATC	5 cut(s)	125, 348, 493, 511, 822
LweI	GCATC	2 cut(s)	529, 736
MaeII	ACGT	1 cut(s)	407
MaeIII	GTNAC	2 cut(s)	110, 934
MalI	GATC	5 cut(s)	127, 350, 495, 513, 824
MbiI	CCGCTC	1 cut(s)	285
MboI	GATC	5 cut(s)	125, 348, 493, 511, 822
MboII	GAAGA	5 cut(s)	256, 488, 602, 651, 892
MfeI	CAATTG	1 cut(s)	768
MflI	RGATCY	1 cut(s)	348
MhlI	GDGCHC	2 cut(s)	631, 658
MluCI	AATT	7 cut(s)	13, 231, 479, 516, 593, 768, 788
MmeI	TCCRAC	1 cut(s)	275
MnlI	CCTC	9 cut(s)	26, 64, 160, 220, 493, 574, 697, 745, 907
MseI	TTAA	3 cut(s)	141, 234, 756
MspA1I	CMGCKG	1 cut(s)	545
MspR9I	CCNGG	2 cut(s)	161, 192
MunI	CAATTG	1 cut(s)	768
MvaI	CCWGG	2 cut(s)	161, 192
NdeI	CATATG	1 cut(s)	931
NdeII	GATC	5 cut(s)	125, 348, 493, 511, 822
NlaIII	CATG	4 cut(s)	609, 884, 910, 956
NlaIV	GGNNCC	3 cut(s)	41, 350, 619
NmuCI	GTSAC	1 cut(s)	110
NspI	RCATGY	1 cut(s)	910
PceI	AGGCCT	2 cut(s)	209, 831
PfeI	GAWTC	6 cut(s)	74, 89, 179, 224, 556, 569
PflMI	CCANNNNNTGG	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	544
Psp6I	CCWGG	2 cut(s)	159, 190
PspGI	CCWGG	2 cut(s)	159, 190
PspN4I	GGNNCC	3 cut(s)	41, 350, 619
PspPI	GGNCC	1 cut(s)	40
PsuI	RGATCY	1 cut(s)	348
RsaI	GTAC	2 cut(s)	254, 619
RsaNI	GTAC	2 cut(s)	253, 618
SaqAI	TTAA	3 cut(s)	141, 234, 756
SatI	GCNGC	1 cut(s)	543
Sau3AI	GATC	5 cut(s)	125, 348, 493, 511, 822
Sau96I	GGNCC	1 cut(s)	40
ScaI	AGTACT	1 cut(s)	254
ScrFI	CCNGG	2 cut(s)	161, 192
SduI	GDGCHC	2 cut(s)	631, 658
SetI	ASST	8 cut(s)	165, 196, 410, 433, 646, 699, 874, 888
SfaNI	GCATC	2 cut(s)	529, 736
Sse9I	AATT	7 cut(s)	13, 231, 479, 516, 593, 768, 788
SseBI	AGGCCT	2 cut(s)	209, 831
SsiI	CCGC	2 cut(s)	285, 543
SspI	AATATT	1 cut(s)	508
StuI	AGGCCT	2 cut(s)	209, 831
StyD4I	CCNGG	2 cut(s)	159, 190
StyI	CCWWGG	2 cut(s)	66, 261
TaiI	ACGT	1 cut(s)	410
TaqI	TCGA	2 cut(s)	825, 853
TasI	AATT	7 cut(s)	13, 231, 479, 516, 593, 768, 788
TatI	WGTACW	1 cut(s)	252
TauI	GCSGC	1 cut(s)	545
TfiI	GAWTC	6 cut(s)	74, 89, 179, 224, 556, 569
Tru1I	TTAA	3 cut(s)	141, 234, 756
Tru9I	TTAA	3 cut(s)	141, 234, 756
TseFI	GTSAC	1 cut(s)	110
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	2 cut(s)	321, 357
Van91I	CCANNNNNTGG	1 cut(s)	197
XapI	RAATTY	3 cut(s)	479, 516, 593
XceI	RCATGY	1 cut(s)	910
ZrmI	AGTACT	1 cut(s)	254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.