Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000883

Physical Location & Seq

Genomic Coordinates Forward (+)

52987670 .. 52993165

Gene Structure 5496 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003809

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2226 bp

ATGCAGAGAGCGGTGGTGGAAGGCCATATGGTAGGCTTGGGTGTCTGCAATGGGGTGAGCCGGTGTGGATGGGCTCGACGCAGTGGTTTGCTAGCTGTTGGGATTACAACCTCCATGATGCAGAATGCACTGAAAGAGTATCTGAATTCTAAGATGACCGGAAACTTTGCGCAGTCTGACAACTTATTGCAACATGACGCGCAGTATCAGGCTCTTGTAGCTTCTCTCTTGAATGGGAACTTGGCAGATGGTTCTTCCAAATTTCAGCAGACCTCACATTTGGATCAAAATCGCTCCCAGACACATAAAAGGAAGCAAGAAGAGCAATGTGTTTTCACAGCTAGTCCTCAGCTAGCATTGAAGGACCACAATCCACTTCTTAATGGGGGACAACAGGAACCTATTTCCATATGGCGAAAGCATAAGAAAGCTAGACTGGATGTCAATCAAGAGGCTGTGAACGAGCATGCATTCCAGAAGATGCTGCAGAGTGAGAACTCGGCTGAATCGGAAAGAGATCAAATACGTGCATTTTTTCAGCATAATGTGATACCAAATCAAGATCAGCAAGCTATTTTGAATGCTGCTCCACAGTTGGGAATTGATAGAGAAAAGCAGCTGCAATGGATGAGGCACCCAGTTCCACAACAGGAGATGGTGCATCAAGCAACTGCAATGCACGCAGTTCCACAACAGGAGAAGGTGCATCAAGCAACTGCAATGCACCAGCCTGGAGTTTGTTCACATCGGCTAATGCAGTACCTGTATCATACTCGCGCTCGGCCAAATGACAATAGCTTGGCCTATTGGAGGCAATTTGTGGCAGAGTTTTATGACCCCTGTGCCAAAAGAAGGTGGTGTTTGTCCTGCTATGATAAAGTTGGAGACCATGCCCTTGGTATTTCCCCCAATGCAGCTATGGTATCATCATGGCCGTGTGGCATATGTAATTGTCAATCAGGGCGGGGATTTGAGGTGAGTTTTGAAGTGCTTCCAAGGCTAAGTAAAGTAACATTTGAGGGTGGTGTGGTTGATGAACTCTTGTTCCTGGATTTGCCTCGTGAGAGTAGATTTTCTTCAGGATTATTGATGCTAGAATGTGGAAGAGCAGTTCAGAAAACTGTCTATGAGCGGCTTCAAGTTGTTCATGAAGGTCGACTTCGTATAATTTTCTCTCCTAATTTGAAGATATTGTCCTGGGAATTTTGTACACGCTCTCATGAAATTTTTCTTCGTCGAACTTCTGTTGCACCTCAGGTTTCTGAGTTGGGTAGTGCTGTACGGAATTATCAGTGCTCTATTGATGATAGAGAATCTAATGGACTTTCATCCCAAGATGTACAAGCTAGTTGCTATAAGATCCTGGAAGCAGGAGGACAAATTGAAAAAGCTTTGAATCTACATGAGGTCGATTATTTGGGATTTTCTAAGAAATACACTCGGTTCTTGCAGATAGCTGATGTTGTTGATAGTATGAAAGATCTAATGACTTTATGTCATAATAAGGGCACTAGCCCAATTGAGAGCCTGAAGAGTTATTGCAGAGGAACTCCCACCAAGCTCCAAAAAAAGAAAATAAGAGGAAAGGGTCAAAAAGAGAGTGCTCAAGGTCTGCCGAAAGACGCGAATAAGTTGGTGGCTACATCTTGTGGTCAAATAAAAAGTAATGCAAGTCAAAGCTGCTCATCTATCAACACTGAAGGTTTCTCAAATGTGCCAGAATATAACCCCGTTGCGAGCAGAGATAGCAAGTGGCAAACTAGTTTAAACCGGTACACTTCACCATTTGAGGGTCCTAAGACCTCAAATTCAGGACTGTATAAGAATTCAGTGGGAAATGGCTTGTTAAATTCAAATTCCTCTATGCAGCAGGATGCTATGCATAACTTAATACAGGAATTTATGAACAGCCGAGCAGTGAATAGGCATGACAGGGATGAAGTCATCTGGGGAAGTGGGAAAAGTTCAGCCGTAGACGTGCCGTCAGGAGTTTGGGGCCGCCCAGCAGCTGCAGCTGCCCTAGGAAATGTTTTGGGCAGTATGCCAGTCAGGACCCGTCAATTGCACTCGAATGCTGCCTTTACTAGGAACTTGTCTGAAGTCGGTGGCAGTTTTCATGGAAAGGTTTTATTACCGGAATCAGTCTTCAGTACATCTAATGGTTATCATGATCACAATAAGTTTTATGGCAATGATAGTAACCTGAACTATGGTTGGAAGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

742

Amino Acids

82.66

Weight (kDa)

8.98

Isoelectric Point (pI)

49.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	250 - 511	2.6e-56	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000883)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g08720 FvH4_3g22621 FvH4_4g11702 FvH4_5g01520 FvH4_5g01520 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g01530 FvH4_5g36380 FvH4_6g01730 FvH4_6g09170 FvH4_6g20010 FvH4_6g28113
malus_domestica	MD06G1073100.v1.1
prunus_persica	Prupe.2G067700_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.5G091500_v2.0.a1 Prupe.7G013000_v2.0.a1
pyrus_communis	pycom01g10330 pycom06g07250
rosa_chinensis	RchiOBHm_Chr7g0199161 RchiOBHm_Chr7g0199171
rosa_laevigata	RLG00000003809 RLG00000014802
rosa_multiflora	Rmu_sc0004791.1_g000001 Rmu_sc0006115.1_g000003 Rmu_sc0037059.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015450 Rroxscaffold_1G00015460 Rroxscaffold_3G00256990 Rroxscaffold_3G00257000 Rroxscaffold_4G00326050 Rroxscaffold_7G00182010
rosa_rugosa	Rorug03G0005500 Rorug03G0273000 Rorug05G0372800 Rorug05G0372900 Rorug07G0053100
rosa_samantha	Rh1BG202800 Rh1DG102500 Rh3AG101900 Rh3AG320900 Rh3CG107700 Rh3DG355100 Rh7AG176700 Rh7AG176800 Rh7AG365300 Rh7BG180300 Rh7CG185900 Rh7CG186000 Rh7CG384200 Rh7DG179700 Rh7DG179800
rosa_wichuraiana	Rw1G014270 Rw3G028010 Rw7G015540 Rw7G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	171
AccB1I	GGYRCC	1 cut(s)	633
AccBSI	CCGCTC	2 cut(s)	11, 1132
AccI	GTMKAC	2 cut(s)	1156, 1974
AccII	CGCG	3 cut(s)	200, 777, 1625
AciI	CCGC	4 cut(s)	11, 964, 1132, 1999
AclWI	GGATC	2 cut(s)	291, 1354
AcoI	YGGCCR	2 cut(s)	782, 932
AcsI	RAATTY	9 cut(s)	145, 260, 1202, 1224, 1807, 1825, 1849, 1855, 1898
AcuI	CTGAAG	5 cut(s)	1062, 1550, 1719, 2118, 2131
AfaI	GTAC	6 cut(s)	761, 1210, 1281, 1341, 1775, 2152
AfiI	CCNNNNNNNGG	5 cut(s)	596, 810, 852, 1790, 2085
AgeI	ACCGGT	1 cut(s)	1770
AgsI	TTSAA	9 cut(s)	232, 361, 580, 986, 1139, 1186, 1385, 1396, 1854
AhdI	GACNNNNNGTC	3 cut(s)	440, 1494, 1981
AhlI	ACTAGT	1 cut(s)	1760
AjiI	CACGTC	1 cut(s)	1978
AjnI	CCWGG	4 cut(s)	730, 1047, 1196, 1362
AjuI	GAANNNNNNNTTGG	2 cut(s)	224, 256
AloI	GAACNNNNNNTCC	4 cut(s)	1029, 1061, 1095, 1127
Alw21I	GWGCWC	2 cut(s)	1298, 1606
Alw26I	GTCTC	1 cut(s)	879
AlwI	GGATC	2 cut(s)	291, 1354
AlwNI	CAGNNNCTG	2 cut(s)	763, 2009
AoxI	GGCC	6 cut(s)	22, 782, 801, 932, 1996, 2220
ApoI	RAATTY	9 cut(s)	145, 260, 1202, 1224, 1807, 1825, 1849, 1855, 1898
ArsI	GACNNNNNNTTYG	2 cut(s)	262, 294
AsiGI	ACCGGT	1 cut(s)	1770
Asp700I	GAANNNNTTC	2 cut(s)	990, 1227
AspA2I	CCTAGG	1 cut(s)	2020
AspLEI	GCGC	3 cut(s)	172, 202, 779
AspS9I	GGNCC	4 cut(s)	364, 1793, 1996, 2052
AsuHPI	GGTGA	3 cut(s)	67, 988, 1773
AsuNHI	GCTAGC	2 cut(s)	91, 352
AvaII	GGWCC	3 cut(s)	364, 1793, 2052
AvrII	CCTAGG	1 cut(s)	2020
AxyI	CCTNAGG	1 cut(s)	1254
BaeGI	GKGCMC	1 cut(s)	1511
BanI	GGYRCC	1 cut(s)	633
BanII	GRGCYC	1 cut(s)	76
BarI	GAAGNNNNNNTAC	2 cut(s)	1060, 1092
BauI	CACGAG	1 cut(s)	1059
BbsI	GAAGAC	1 cut(s)	2137
Bbv12I	GWGCWC	2 cut(s)	1298, 1606
BbvCI	CCTCAGC	1 cut(s)	348
BccI	CCATC	3 cut(s)	63, 242, 649
BceAI	ACGGC	3 cut(s)	919, 1955, 1966
BciT130I	CCWGG	4 cut(s)	732, 1049, 1198, 1364
BclI	TGATCA	1 cut(s)	2170
BcoDI	GTCTC	1 cut(s)	879
BcuI	ACTAGT	1 cut(s)	1760
BfmI	CTRYAG	2 cut(s)	485, 2010
BglII	AGATCT	1 cut(s)	1480
BlnI	CCTAGG	1 cut(s)	2020
Bme1390I	CCNGG	4 cut(s)	732, 1049, 1198, 1364
Bme18I	GGWCC	3 cut(s)	364, 1793, 2052
BmeRI	GACNNNNNGTC	3 cut(s)	440, 1494, 1981
BmgBI	CACGTC	1 cut(s)	1978
BmgT120I	GGNCC	4 cut(s)	364, 1793, 1996, 2052
BmiI	GGNNCC	5 cut(s)	399, 635, 1794, 1997, 2054
BmrFI	CCNGG	4 cut(s)	732, 1049, 1198, 1364
BmrI	ACTGGG	1 cut(s)	632
BmsI	GCATC	6 cut(s)	108, 471, 670, 715, 1080, 1864
BmtI	GCTAGC	2 cut(s)	95, 356
BmuI	ACTGGG	1 cut(s)	632
BpiI	GAAGAC	1 cut(s)	2137
BpmI	CTGGAG	1 cut(s)	753
Bpu10I	CCTNAGC	1 cut(s)	348
BpuEI	CTTGAG	1 cut(s)	1590
BsaAI	YACGTR	1 cut(s)	527
BsaBI	GATNNNNATC	2 cut(s)	288, 444
BsaI	GGTCTC	1 cut(s)	879
BsaJI	CCNNGG	4 cut(s)	895, 995, 1197, 2020
BsaWI	WCCGGW	3 cut(s)	158, 1770, 2134
Bsc4I	CCNNNNNNNGG	5 cut(s)	596, 810, 852, 1790, 2085
Bse118I	RCCGGY	2 cut(s)	60, 1770
Bse1I	ACTGG	3 cut(s)	441, 638, 2045
Bse21I	CCTNAGG	1 cut(s)	1254
Bse3DI	GCAATG	6 cut(s)	55, 332, 629, 681, 726, 2197
Bse8I	GATNNNNATC	2 cut(s)	288, 444
BseBI	CCWGG	4 cut(s)	732, 1049, 1198, 1364
BseDI	CCNNGG	4 cut(s)	895, 995, 1197, 2020
BseGI	GGATG	6 cut(s)	74, 445, 633, 1328, 1879, 1942
BseJI	GATNNNNATC	2 cut(s)	288, 444
BseLI	CCNNNNNNNGG	5 cut(s)	596, 810, 852, 1790, 2085
BseMI	GCAATG	6 cut(s)	55, 332, 629, 681, 726, 2197
BseMII	CTCAG	3 cut(s)	362, 1254, 1268
BseNI	ACTGG	3 cut(s)	441, 638, 2045
BseSI	GKGCMC	1 cut(s)	1511
BseYI	CCCAGC	1 cut(s)	2002
Bsh1236I	CGCG	3 cut(s)	200, 777, 1625
BshFI	GGCC	6 cut(s)	24, 784, 803, 934, 1998, 2222
BshNI	GGYRCC	1 cut(s)	633
BshTI	ACCGGT	1 cut(s)	1770
BsiHKAI	GWGCWC	2 cut(s)	1298, 1606
BsiSI	CCGG	4 cut(s)	61, 159, 1771, 2135
BslFI	GGGAC	1 cut(s)	402
BslI	CCNNNNNNNGG	5 cut(s)	596, 810, 852, 1790, 2085
BsmAI	GTCTC	1 cut(s)	879
BsmFI	GGGAC	1 cut(s)	402
BsmI	GAATGC	4 cut(s)	130, 470, 586, 2077
BsnI	GGCC	6 cut(s)	24, 784, 803, 934, 1998, 2222
Bso31I	GGTCTC	1 cut(s)	879
Bsp1286I	GDGCHC	4 cut(s)	76, 1298, 1511, 1606
Bsp1407I	TGTACA	2 cut(s)	1208, 1339
Bsp143I	GATC	6 cut(s)	283, 517, 562, 1359, 1480, 2170
BspACI	CCGC	4 cut(s)	11, 964, 1132, 1999
BspANI	GGCC	6 cut(s)	24, 784, 803, 934, 1998, 2222
BspCNI	CTCAG	3 cut(s)	361, 1255, 1267
BspFNI	CGCG	3 cut(s)	200, 777, 1625
BspHI	TCATGA	3 cut(s)	1147, 1219, 2167
BspLI	GGNNCC	5 cut(s)	399, 635, 1794, 1997, 2054
BspMAI	CTGCAG	2 cut(s)	489, 2014
BspOI	GCTAGC	2 cut(s)	95, 356
BspPI	GGATC	2 cut(s)	291, 1354
BspQI	GCTCTTC	2 cut(s)	315, 1099
BspT107I	GGYRCC	1 cut(s)	633
BspTNI	GGTCTC	1 cut(s)	879
BsrBI	CCGCTC	2 cut(s)	11, 1132
BsrDI	GCAATG	6 cut(s)	55, 332, 629, 681, 726, 2197
BsrFI	RCCGGY	2 cut(s)	60, 1770
BsrGI	TGTACA	2 cut(s)	1208, 1339
BsrI	ACTGG	3 cut(s)	441, 638, 2045
BssAI	RCCGGY	2 cut(s)	60, 1770
BssECI	CCNNGG	4 cut(s)	895, 995, 1197, 2020
BssMI	GATC	6 cut(s)	283, 517, 562, 1359, 1480, 2170
BssSI	CACGAG	1 cut(s)	1059
BssT1I	CCWWGG	3 cut(s)	895, 995, 2020
Bst2BI	CACGAG	1 cut(s)	1059
Bst2UI	CCWGG	4 cut(s)	732, 1049, 1198, 1364
Bst4CI	ACNGT	3 cut(s)	594, 1123, 1818
Bst6I	CTCTTC	3 cut(s)	315, 1099, 1526
BstAUI	TGTACA	2 cut(s)	1208, 1339
BstBAI	YACGTR	1 cut(s)	527
BstC8I	GCNNGC	6 cut(s)	93, 354, 468, 570, 681, 1738
BstDEI	CTNAG	7 cut(s)	150, 348, 1001, 1254, 1263, 1428, 1797
BstENI	CCTNNNNNAGG	2 cut(s)	808, 2083
BstF5I	GGATG	6 cut(s)	74, 445, 633, 1328, 1879, 1942
BstFNI	CGCG	3 cut(s)	200, 777, 1625
BstHHI	GCGC	3 cut(s)	172, 202, 779
BstKTI	GATC	6 cut(s)	286, 520, 565, 1362, 1483, 2173
BstMAI	GTCTC	1 cut(s)	879
BstMBI	GATC	6 cut(s)	283, 517, 562, 1359, 1480, 2170
BstMWI	GCNNNNNNNGC	7 cut(s)	218, 322, 680, 997, 1746, 2012, 2015
BstNI	CCWGG	4 cut(s)	732, 1049, 1198, 1364
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	4 cut(s)	730, 1047, 1196, 1362
BstSFI	CTRYAG	2 cut(s)	485, 2010
BstSLI	GKGCMC	1 cut(s)	1511
BstUI	CGCG	3 cut(s)	200, 777, 1625
BstV2I	GAAGAC	1 cut(s)	2137
BstX2I	RGATCY	2 cut(s)	1359, 1480
BstXI	CCANNNNNNTGG	1 cut(s)	896
BstYI	RGATCY	2 cut(s)	1359, 1480
Bsu36I	CCTNAGG	1 cut(s)	1254
BsuRI	GGCC	6 cut(s)	24, 784, 803, 934, 1998, 2222
BtrI	CACGTC	1 cut(s)	1978
BtsCI	GGATG	6 cut(s)	74, 445, 633, 1328, 1879, 1942
BtsI	GCAGTG	2 cut(s)	88, 1923
BtsIMutI	CAGTG	6 cut(s)	88, 128, 1298, 1695, 1836, 1923
Cac8I	GCNNGC	6 cut(s)	93, 354, 468, 570, 681, 1738
CaiI	CAGNNNCTG	2 cut(s)	763, 2009
CciI	TCATGA	3 cut(s)	1147, 1219, 2167
CfoI	GCGC	3 cut(s)	172, 202, 779
Cfr10I	RCCGGY	2 cut(s)	60, 1770
Cfr13I	GGNCC	4 cut(s)	364, 1793, 1996, 2052
CseI	GACGC	3 cut(s)	87, 206, 1631
Csp6I	GTAC	6 cut(s)	760, 1209, 1280, 1340, 1774, 2151
CspAI	ACCGGT	1 cut(s)	1770
CviQI	GTAC	6 cut(s)	760, 1209, 1280, 1340, 1774, 2151
DdeI	CTNAG	7 cut(s)	150, 348, 1001, 1254, 1263, 1428, 1797
DpnI	GATC	6 cut(s)	285, 519, 564, 1361, 1482, 2172
DpnII	GATC	6 cut(s)	283, 517, 562, 1359, 1480, 2170
DraI	TTTAAA	1 cut(s)	1767
DriI	GACNNNNNGTC	3 cut(s)	440, 1494, 1981
EaeI	YGGCCR	2 cut(s)	782, 932
Eam1104I	CTCTTC	3 cut(s)	315, 1099, 1526
Eam1105I	GACNNNNNGTC	3 cut(s)	440, 1494, 1981
EarI	CTCTTC	3 cut(s)	315, 1099, 1526
Eco130I	CCWWGG	3 cut(s)	895, 995, 2020
Eco147I	AGGCCT	1 cut(s)	2222
Eco24I	GRGCYC	1 cut(s)	76
Eco31I	GGTCTC	1 cut(s)	879
Eco47I	GGWCC	3 cut(s)	364, 1793, 2052
Eco57I	CTGAAG	5 cut(s)	1062, 1550, 1719, 2118, 2131
Eco81I	CCTNAGG	1 cut(s)	1254
EcoNI	CCTNNNNNAGG	2 cut(s)	808, 2083
EcoO109I	RGGNCCY	2 cut(s)	1793, 2052
EcoRI	GAATTC	2 cut(s)	145, 1825
EcoRII	CCWGG	4 cut(s)	730, 1047, 1196, 1362
EcoT14I	CCWWGG	3 cut(s)	895, 995, 2020
EcoT22I	ATGCAT	2 cut(s)	472, 1884
EcoT38I	GRGCYC	1 cut(s)	76
ErhI	CCWWGG	3 cut(s)	895, 995, 2020
FalI	AAGNNNNNCTT	2 cut(s)	1143, 1175
FaqI	GGGAC	1 cut(s)	402
FauI	CCCGC	1 cut(s)	957
FauNDI	CATATG	3 cut(s)	27, 410, 944
FbaI	TGATCA	1 cut(s)	2170
FblI	GTMKAC	2 cut(s)	1156, 1974
FokI	GGATG	6 cut(s)	81, 452, 640, 1315, 1886, 1949
FriOI	GRGCYC	1 cut(s)	76
FspI	TGCGCA	1 cut(s)	171
GlaI	GCGC	3 cut(s)	171, 201, 778
GsaI	CCCAGC	1 cut(s)	2006
GsuI	CTGGAG	1 cut(s)	753
HaeIII	GGCC	6 cut(s)	24, 784, 803, 934, 1998, 2222
HapII	CCGG	4 cut(s)	61, 159, 1771, 2135
HgaI	GACGC	3 cut(s)	87, 206, 1631
HhaI	GCGC	3 cut(s)	172, 202, 779
Hin6I	GCGC	3 cut(s)	170, 200, 777
HinP1I	GCGC	3 cut(s)	170, 200, 777
HincII	GTYRAC	1 cut(s)	1157
HindII	GTYRAC	1 cut(s)	1157
HindIII	AAGCTT	1 cut(s)	1389
HinfI	GANTC	4 cut(s)	506, 1313, 1396, 2138
HpaII	CCGG	4 cut(s)	61, 159, 1771, 2135
HphI	GGTGA	3 cut(s)	67, 988, 1773
Hpy166II	GTNNAC	6 cut(s)	460, 743, 1157, 1211, 1776, 1975
Hpy188I	TCNGA	6 cut(s)	144, 178, 511, 1116, 1264, 2098
Hpy8I	GTNNAC	6 cut(s)	460, 743, 1157, 1211, 1776, 1975
Hpy99I	CGWCG	2 cut(s)	81, 1239
HpyAV	CCTTC	7 cut(s)	14, 355, 694, 846, 1145, 1694, 2212
HpyCH4III	ACNGT	3 cut(s)	594, 1123, 1818
HpyCH4IV	ACGT	2 cut(s)	526, 1977
HpyF10VI	GCNNNNNNNGC	7 cut(s)	218, 322, 680, 997, 1746, 2012, 2015
HpyF3I	CTNAG	7 cut(s)	150, 348, 1001, 1254, 1263, 1428, 1797
HpySE526I	ACGT	2 cut(s)	526, 1977
HspAI	GCGC	3 cut(s)	170, 200, 777
Ksp22I	TGATCA	1 cut(s)	2170
Kzo9I	GATC	6 cut(s)	283, 517, 562, 1359, 1480, 2170
LguI	GCTCTTC	2 cut(s)	315, 1099
LmnI	GCTCC	3 cut(s)	299, 592, 1566
LweI	GCATC	6 cut(s)	108, 471, 670, 715, 1080, 1864
MaeII	ACGT	2 cut(s)	526, 1977
MaeIII	GTNAC	2 cut(s)	1009, 2198
MalI	GATC	6 cut(s)	285, 519, 564, 1361, 1482, 2172
MbiI	CCGCTC	2 cut(s)	11, 1132
MboI	GATC	6 cut(s)	283, 517, 562, 1359, 1480, 2170
MboII	GAAGA	9 cut(s)	246, 332, 490, 1068, 1116, 1198, 1223, 1543, 2137
MfeI	CAATTG	2 cut(s)	1518, 2060
MflI	RGATCY	2 cut(s)	1359, 1480
MhlI	GDGCHC	4 cut(s)	76, 1298, 1511, 1606
MmeI	TCCRAC	2 cut(s)	862, 2195
Mph1103I	ATGCAT	2 cut(s)	472, 1884
MroXI	GAANNNNTTC	2 cut(s)	990, 1227
MseI	TTAA	4 cut(s)	381, 1766, 1847, 1889
MslI	CAYNNNNRTG	2 cut(s)	934, 2070
MspA1I	CMGCKG	3 cut(s)	619, 2009, 2015
MspI	CCGG	4 cut(s)	61, 159, 1771, 2135
MspR9I	CCNGG	4 cut(s)	732, 1049, 1198, 1364
MssI	GTTTAAAC	1 cut(s)	1767
MunI	CAATTG	2 cut(s)	1518, 2060
Mva1269I	GAATGC	4 cut(s)	130, 470, 586, 2077
MvaI	CCWGG	4 cut(s)	732, 1049, 1198, 1364
MvnI	CGCG	3 cut(s)	200, 777, 1625
MwoI	GCNNNNNNNGC	7 cut(s)	218, 322, 680, 997, 1746, 2012, 2015
NdeI	CATATG	3 cut(s)	27, 410, 944
NdeII	GATC	6 cut(s)	283, 517, 562, 1359, 1480, 2170
NheI	GCTAGC	2 cut(s)	91, 352
NlaIV	GGNNCC	5 cut(s)	399, 635, 1794, 1997, 2054
NmeAIII	GCCGAG	3 cut(s)	479, 760, 1937
NsbI	TGCGCA	1 cut(s)	171
NsiI	ATGCAT	2 cut(s)	472, 1884
NspI	RCATGY	1 cut(s)	470
PaeI	GCATGC	1 cut(s)	470
PagI	TCATGA	3 cut(s)	1147, 1219, 2167
PceI	AGGCCT	1 cut(s)	2222
PciSI	GCTCTTC	2 cut(s)	315, 1099
PctI	GAATGC	4 cut(s)	130, 470, 586, 2077
PdmI	GAANNNNTTC	2 cut(s)	990, 1227
PfeI	GAWTC	4 cut(s)	506, 1313, 1396, 2138
PfoI	TCCNGGA	2 cut(s)	1047, 1362
PinAI	ACCGGT	1 cut(s)	1770
PmeI	GTTTAAAC	1 cut(s)	1767
Ppu21I	YACGTR	1 cut(s)	527
PpuMI	RGGWCCY	2 cut(s)	1793, 2052
Psp5II	RGGWCCY	2 cut(s)	1793, 2052
Psp6I	CCWGG	4 cut(s)	730, 1047, 1196, 1362
PspFI	CCCAGC	1 cut(s)	2002
PspGI	CCWGG	4 cut(s)	730, 1047, 1196, 1362
PspN4I	GGNNCC	5 cut(s)	399, 635, 1794, 1997, 2054
PspPI	GGNCC	4 cut(s)	364, 1793, 1996, 2052
PspPPI	RGGWCCY	2 cut(s)	1793, 2052
PstI	CTGCAG	2 cut(s)	489, 2014
PstNI	CAGNNNCTG	2 cut(s)	763, 2009
PsuI	RGATCY	2 cut(s)	1359, 1480
PvuII	CAGCTG	3 cut(s)	619, 2009, 2015
RsaI	GTAC	6 cut(s)	761, 1210, 1281, 1341, 1775, 2152
RsaNI	GTAC	6 cut(s)	760, 1209, 1280, 1340, 1774, 2151
RseI	CAYNNNNRTG	2 cut(s)	934, 2070
SalI	GTCGAC	1 cut(s)	1155
SapI	GCTCTTC	2 cut(s)	315, 1099
SaqAI	TTAA	4 cut(s)	381, 1766, 1847, 1889
Sau3AI	GATC	6 cut(s)	283, 517, 562, 1359, 1480, 2170
Sau96I	GGNCC	4 cut(s)	364, 1793, 1996, 2052
ScrFI	CCNGG	4 cut(s)	732, 1049, 1198, 1364
SduI	GDGCHC	4 cut(s)	76, 1298, 1511, 1606
SfaNI	GCATC	6 cut(s)	108, 471, 670, 715, 1080, 1864
SfcI	CTRYAG	2 cut(s)	485, 2010
SinI	GGWCC	3 cut(s)	364, 1793, 2052
SmiMI	CAYNNNNRTG	2 cut(s)	934, 2070
SmlI	CTYRAG	1 cut(s)	1605
SmoI	CTYRAG	1 cut(s)	1605
SpeI	ACTAGT	1 cut(s)	1760
SphI	GCATGC	1 cut(s)	470
SseBI	AGGCCT	1 cut(s)	2222
SsiI	CCGC	4 cut(s)	11, 964, 1132, 1999
StuI	AGGCCT	1 cut(s)	2222
StyD4I	CCNGG	4 cut(s)	730, 1047, 1196, 1362
StyI	CCWWGG	3 cut(s)	895, 995, 2020
TaaI	ACNGT	3 cut(s)	594, 1123, 1818
TaiI	ACGT	2 cut(s)	529, 1980
TaqI	TCGA	5 cut(s)	76, 1156, 1237, 1410, 2069
TatI	WGTACW	3 cut(s)	1208, 1339, 2150
TauI	GCSGC	2 cut(s)	1135, 2001
TfiI	GAWTC	4 cut(s)	506, 1313, 1396, 2138
Tru1I	TTAA	4 cut(s)	381, 1766, 1847, 1889
Tru9I	TTAA	4 cut(s)	381, 1766, 1847, 1889
TscAI	CASTG	6 cut(s)	88, 135, 1298, 1702, 1836, 1923
TspDTI	ATGAA	9 cut(s)	1050, 1136, 1164, 1236, 1317, 1490, 1919, 1953, 2105
TspGWI	ACGGA	1 cut(s)	1297
TspRI	CASTG	6 cut(s)	88, 135, 1298, 1702, 1836, 1923
VpaK11BI	GGWCC	3 cut(s)	364, 1793, 2052
XagI	CCTNNNNNAGG	2 cut(s)	808, 2083
XapI	RAATTY	9 cut(s)	145, 260, 1202, 1224, 1807, 1825, 1849, 1855, 1898
XceI	RCATGY	1 cut(s)	470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	916
XmaJI	CCTAGG	1 cut(s)	2020
XmiI	GTMKAC	2 cut(s)	1156, 1974
XmnI	GAANNNNTTC	2 cut(s)	990, 1227
Zsp2I	ATGCAT	2 cut(s)	472, 1884

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.