DDE superfamily endonuclease
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AclWI | GGATC | 2 cut(s) | 136, 151 |
| AfaI | GTAC | 1 cut(s) | 81 |
| AgsI | TTSAA | 1 cut(s) | 101 |
| AhlI | ACTAGT | 1 cut(s) | 116 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 29 |
| AluBI | AGCT | 1 cut(s) | 209 |
| AluI | AGCT | 1 cut(s) | 209 |
| Alw26I | GTCTC | 1 cut(s) | 161 |
| AlwI | GGATC | 2 cut(s) | 136, 151 |
| AoxI | GGCC | 1 cut(s) | 292 |
| BbsI | GAAGAC | 1 cut(s) | 226 |
| BccI | CCATC | 1 cut(s) | 116 |
| BcoDI | GTCTC | 1 cut(s) | 161 |
| BcuI | ACTAGT | 1 cut(s) | 116 |
| BfaI | CTAG | 2 cut(s) | 117, 206 |
| BfmI | CTRYAG | 1 cut(s) | 296 |
| BmsI | GCATC | 1 cut(s) | 46 |
| BpiI | GAAGAC | 1 cut(s) | 226 |
| BseGI | GGATG | 1 cut(s) | 61 |
| BseMII | CTCAG | 1 cut(s) | 146 |
| BshFI | GGCC | 1 cut(s) | 294 |
| BsmAI | GTCTC | 1 cut(s) | 161 |
| BsmBI | CGTCTC | 1 cut(s) | 161 |
| BsnI | GGCC | 1 cut(s) | 294 |
| Bsp1407I | TGTACA | 1 cut(s) | 79 |
| Bsp143I | GATC | 2 cut(s) | 128, 143 |
| BspANI | GGCC | 1 cut(s) | 294 |
| BspCNI | CTCAG | 1 cut(s) | 145 |
| BspPI | GGATC | 2 cut(s) | 136, 151 |
| BsrGI | TGTACA | 1 cut(s) | 79 |
| BssMI | GATC | 2 cut(s) | 128, 143 |
| BstAUI | TGTACA | 1 cut(s) | 79 |
| BstDEI | CTNAG | 1 cut(s) | 132 |
| BstF5I | GGATG | 1 cut(s) | 61 |
| BstKTI | GATC | 2 cut(s) | 131, 146 |
| BstMAI | GTCTC | 1 cut(s) | 161 |
| BstMBI | GATC | 2 cut(s) | 128, 143 |
| BstSFI | CTRYAG | 1 cut(s) | 296 |
| BstV2I | GAAGAC | 1 cut(s) | 226 |
| BstX2I | RGATCY | 1 cut(s) | 128 |
| BstYI | RGATCY | 1 cut(s) | 128 |
| BsuRI | GGCC | 1 cut(s) | 294 |
| BtsCI | GGATG | 1 cut(s) | 61 |
| Csp6I | GTAC | 1 cut(s) | 80 |
| CviAII | CATG | 4 cut(s) | 161, 218, 244, 290 |
| CviJI | RGCY | 3 cut(s) | 209, 222, 294 |
| CviKI_1 | RGCY | 3 cut(s) | 209, 222, 294 |
| CviQI | GTAC | 1 cut(s) | 80 |
| DdeI | CTNAG | 1 cut(s) | 132 |
| DpnI | GATC | 2 cut(s) | 130, 145 |
| DpnII | GATC | 2 cut(s) | 128, 143 |
| Esp3I | CGTCTC | 1 cut(s) | 161 |
| FaeI | CATG | 4 cut(s) | 164, 221, 247, 293 |
| FaiI | YATR | 9 cut(s) | 65, 113, 138, 162, 219, 245, 272, 291, 298 |
| FatI | CATG | 4 cut(s) | 160, 217, 243, 289 |
| FokI | GGATG | 1 cut(s) | 68 |
| FspBI | CTAG | 2 cut(s) | 117, 206 |
| HaeIII | GGCC | 1 cut(s) | 294 |
| Hin1II | CATG | 4 cut(s) | 164, 221, 247, 293 |
| HinfI | GANTC | 1 cut(s) | 67 |
| Hpy166II | GTNNAC | 1 cut(s) | 80 |
| Hpy188III | TCNNGA | 1 cut(s) | 71 |
| Hpy8I | GTNNAC | 1 cut(s) | 80 |
| HpyCH4IV | ACGT | 1 cut(s) | 93 |
| HpyCH4V | TGCA | 1 cut(s) | 59 |
| HpyF3I | CTNAG | 1 cut(s) | 132 |
| HpySE526I | ACGT | 1 cut(s) | 93 |
| Hsp92II | CATG | 4 cut(s) | 164, 221, 247, 293 |
| Kzo9I | GATC | 2 cut(s) | 128, 143 |
| LweI | GCATC | 1 cut(s) | 46 |
| MaeI | CTAG | 2 cut(s) | 117, 206 |
| MaeII | ACGT | 1 cut(s) | 93 |
| MalI | GATC | 2 cut(s) | 130, 145 |
| MboI | GATC | 2 cut(s) | 128, 143 |
| MboII | GAAGA | 5 cut(s) | 47, 50, 185, 191, 226 |
| MflI | RGATCY | 1 cut(s) | 128 |
| MluCI | AATT | 1 cut(s) | 149 |
| MnlI | CCTC | 4 cut(s) | 67, 148, 222, 247 |
| NdeII | GATC | 2 cut(s) | 128, 143 |
| NlaIII | CATG | 4 cut(s) | 164, 221, 247, 293 |
| PfeI | GAWTC | 1 cut(s) | 67 |
| PsuI | RGATCY | 1 cut(s) | 128 |
| RsaI | GTAC | 1 cut(s) | 81 |
| RsaNI | GTAC | 1 cut(s) | 80 |
| Sau3AI | GATC | 2 cut(s) | 128, 143 |
| SetI | ASST | 3 cut(s) | 96, 211, 282 |
| SfaNI | GCATC | 1 cut(s) | 46 |
| SfcI | CTRYAG | 1 cut(s) | 296 |
| SgeI | CNNG | 9 cut(s) | 72, 83, 95, 129, 173, 218, 230, 235, 256 |
| SpeI | ACTAGT | 1 cut(s) | 116 |
| Sse9I | AATT | 1 cut(s) | 149 |
| SspMI | CTAG | 2 cut(s) | 117, 206 |
| TaiI | ACGT | 1 cut(s) | 96 |
| TasI | AATT | 1 cut(s) | 149 |
| TatI | WGTACW | 1 cut(s) | 79 |
| TfiI | GAWTC | 1 cut(s) | 67 |
| TspDTI | ATGAA | 4 cut(s) | 48, 80, 122, 192 |
| TspGWI | ACGGA | 1 cut(s) | 185 |
| XspI | CTAG | 2 cut(s) | 117, 206 |