Rorug05G0372800
MYB Family

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000175
Physical Location & Seq
Reverse (-)
50237317 .. 50239834
2518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0372800.1

Sequence Viewer

Length: 216 bp
ATGTTTAATAGCACAGTTACCGAAGATGATGGTTTCTTATGTCCTGCTGATGGGGCCATAATGATAACAGCAGCAAGTCATTTACCTTACAACAGGAATGGTTTCAAATTCTTCACAAATGCTGGAGGGCTTGGGAAAGTTGACATTAAAAACATCTTGGAGCATGCTACAGATATTTACAACAAGTGGTGGGATAGAGATGGAGTGGTGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS RVT_2

Protein Analysis

71

Amino Acids

7.84

Weight (kDa)

4.99

Isoelectric Point (pI)

20.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PGM_PMM_I PF02878 16 - 57 4.6e-06 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 107
AfiI CCNNNNNNNGG 1 cut(s) 50
AgsI TTSAA 1 cut(s) 106
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 1 cut(s) 107
Asp700I GAANNNNTTC 1 cut(s) 101
AspS9I GGNCC 1 cut(s) 54
BbvI GCAGC 1 cut(s) 83
BccI CCATC 3 cut(s) 23, 44, 194
BfmI CTRYAG 1 cut(s) 168
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 55
BpmI CTGGAG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 1 cut(s) 50
BseLI CCNNNNNNNGG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 83
BshFI GGCC 1 cut(s) 56
BslI CCNNNNNNNGG 1 cut(s) 50
BsnI GGCC 1 cut(s) 56
BspANI GGCC 1 cut(s) 56
BspLI GGNNCC 1 cut(s) 55
Bst4CI ACNGT 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 165
BstMWI GCNNNNNNNGC 1 cut(s) 53
BstNSI RCATGY 1 cut(s) 167
BstSFI CTRYAG 1 cut(s) 168
BstV1I GCAGC 1 cut(s) 83
BsuRI GGCC 1 cut(s) 56
Cac8I GCNNGC 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 54
CviAII CATG 1 cut(s) 164
CviJI RGCY 2 cut(s) 56, 130
CviKI_1 RGCY 2 cut(s) 56, 130
FaeI CATG 1 cut(s) 167
FaiI YATR 3 cut(s) 40, 59, 165
FatI CATG 1 cut(s) 163
Fnu4HI GCNGC 1 cut(s) 72
Fsp4HI GCNGC 1 cut(s) 72
GluI GCNGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 56
Hin1II CATG 1 cut(s) 167
HincII GTYRAC 1 cut(s) 142
HindII GTYRAC 1 cut(s) 142
Hpy166II GTNNAC 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 142
HpyCH4III ACNGT 1 cut(s) 16
HpyF10VI GCNNNNNNNGC 1 cut(s) 53
Hsp92II CATG 1 cut(s) 167
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 3 cut(s) 57, 79, 108
Lsp1109I GCAGC 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 16
MboII GAAGA 2 cut(s) 35, 103
MluCI AATT 1 cut(s) 107
MnlI CCTC 1 cut(s) 119
MroXI GAANNNNTTC 1 cut(s) 101
MseI TTAA 2 cut(s) 6, 147
MwoI GCNNNNNNNGC 1 cut(s) 53
NlaIII CATG 1 cut(s) 167
NlaIV GGNNCC 1 cut(s) 55
NspI RCATGY 1 cut(s) 167
PaeI GCATGC 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 73
PspN4I GGNNCC 1 cut(s) 55
PspPI GGNCC 1 cut(s) 54
SaqAI TTAA 2 cut(s) 6, 147
SatI GCNGC 1 cut(s) 72
Sau96I GGNCC 1 cut(s) 54
SetI ASST 1 cut(s) 88
SfcI CTRYAG 1 cut(s) 168
SgeI CNNG 8 cut(s) 56, 87, 106, 135, 143, 169, 176, 196
SphI GCATGC 1 cut(s) 167
Sse9I AATT 1 cut(s) 107
TaaI ACNGT 1 cut(s) 16
TasI AATT 1 cut(s) 107
Tru1I TTAA 2 cut(s) 6, 147
Tru9I TTAA 2 cut(s) 6, 147
TseI GCWGC 1 cut(s) 71
XapI RAATTY 1 cut(s) 107
XceI RCATGY 1 cut(s) 167
XmnI GAANNNNTTC 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.