Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000175

Physical Location & Seq

Genomic Coordinates Forward (+)

19318949 .. 19319962

Gene Structure 1014 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00015550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1014 bp

ATGGATACCCTCTTTGATAGATTTTCTGGTCCCATAGAGGGATTTTATTTTGGCCATGCCCCAACTTCAATCACTTTCAATCCAAATCTTGCAAACGAGTGCAAAGTAACTCAGGAATCCACCAATACACTTATCCATCCAGCCAACTTAGACCATCCAAGTGATTTGAGTACGTCTTTGAGCCCAGCTTCTGAGGAAGAAACTGTTGATGTTAGTTACTCCAACAATCCTGTTATCAAGTACATAAGTGATATTCTTCTGGATGAAGTCCTGGAGGACGAGAGCTGCATGCTGCAGGACTATTTGGCCGTCCAAGCTGCTGAAAAATCTTTCTATGATGTCCTTAATCCGAATGATCCTCATTCACCCAACAAGGCTTCTCTTGGTGAATCGTTTTCAGATACTCTTTTGGTTTCAGATTCACTTTTTGAGAGGCAGAGTCTTGGAAATTTCGGAAATGTTGGGGAGGCAAACAAGTTCCTTCCTAATGGGGAATTCGATATCATTGACAAGGAGAGGTACGAATTACTGCCTGCAGCACGTTCTAACCTGGTGGAAGGGAATCAGGCATCTGATAAAAAAAATGATGTAAACAACCCAATAGATGGTATGAAGGGAAAGAAAAATCATCACAGAGAGGATGGAGATTATCCAGAGGAAGGAAGAAGCAGCAAGCAGTCAGTTGTTTCTGCTGATGACTCTGAGCCTCAAGAAATGTTTGATAAGGTGTTACTCTGTCAAGCTGAGCATCATCATCGGGAGTGGGAATCTTGTACACCTCATTGCTCTATGAAAATGGAGGAAACAGAGCAGTTGCAGCAAAACAGGCAGCCTAAAGGATCTAAAACAAATCGTTCAAAGCGACAAAATAAAGATGAGGAAGGAGTAGATTTGACCACCATGCTAAATCAATGTGCACAAGCCGTGGCAAGCTATGAACAAGGAACGGCGAGTGAACTACTCAAGAAGATAAGGCAGCACTCCTCCCCCATGGACATGCAACTCAGAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

337

Amino Acids

37.81

Weight (kDa)

4.71

Isoelectric Point (pI)

52.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca	FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica	MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica	Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis	pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis	RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata	RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora	Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa	Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha	Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana	Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	605
AclWI	GGATC	2 cut(s)	350, 847
AcoI	YGGCCR	2 cut(s)	52, 306
AcsI	RAATTY	2 cut(s)	448, 494
AfaI	GTAC	4 cut(s)	172, 242, 521, 775
AfiI	CCNNNNNNNGG	3 cut(s)	38, 605, 659
AgsI	TTSAA	3 cut(s)	69, 79, 858
AjnI	CCWGG	2 cut(s)	270, 549
AluBI	AGCT	5 cut(s)	188, 285, 317, 743, 933
AluI	AGCT	5 cut(s)	188, 285, 317, 743, 933
Alw21I	GWGCWC	1 cut(s)	919
Alw44I	GTGCAC	1 cut(s)	915
AlwI	GGATC	2 cut(s)	350, 847
AlwNI	CAGNNNCTG	1 cut(s)	191
AoxI	GGCC	2 cut(s)	52, 306
ApaLI	GTGCAC	1 cut(s)	915
ApeKI	GCWGC	8 cut(s)	285, 292, 317, 536, 669, 817, 829, 976
ApoI	RAATTY	2 cut(s)	448, 494
AspS9I	GGNCC	1 cut(s)	29
AsuHPI	GGTGA	2 cut(s)	357, 398
AvaII	GGWCC	1 cut(s)	29
BaeGI	GKGCMC	1 cut(s)	919
BalI	TGGCCA	1 cut(s)	54
BanII	GRGCYC	1 cut(s)	185
Bbv12I	GWGCWC	1 cut(s)	919
BbvI	GCAGC	8 cut(s)	272, 279, 304, 548, 681, 829, 841, 988
BccI	CCATC	4 cut(s)	144, 162, 599, 635
BceAI	ACGGC	3 cut(s)	293, 908, 963
BcgI	CGANNNNNNTGC	2 cut(s)	737, 771
BciT130I	CCWGG	2 cut(s)	272, 551
BfmI	CTRYAG	2 cut(s)	293, 534
BisI	GCNGC	8 cut(s)	286, 293, 318, 537, 670, 818, 830, 977
BlpI	GCTNAGC	1 cut(s)	744
BlsI	GCNGC	8 cut(s)	287, 294, 319, 538, 671, 819, 831, 978
Bme1390I	CCNGG	2 cut(s)	272, 551
Bme18I	GGWCC	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	29
BmiI	GGNNCC	1 cut(s)	31
BmrFI	CCNGG	2 cut(s)	272, 551
BmsI	GCATC	2 cut(s)	578, 757
BpmI	CTGGAG	1 cut(s)	293
Bpu1102I	GCTNAGC	1 cut(s)	744
BpuEI	CTTGAG	2 cut(s)	693, 947
BsaJI	CCNNGG	2 cut(s)	924, 990
Bsc4I	CCNNNNNNNGG	3 cut(s)	38, 605, 659
Bse3DI	GCAATG	1 cut(s)	781
BseBI	CCWGG	2 cut(s)	272, 551
BseDI	CCNNGG	2 cut(s)	924, 990
BseGI	GGATG	4 cut(s)	136, 154, 268, 646
BseLI	CCNNNNNNNGG	3 cut(s)	38, 605, 659
BseMI	GCAATG	1 cut(s)	781
BseMII	CTCAG	4 cut(s)	125, 183, 693, 735
BseRI	GAGGAG	1 cut(s)	973
BseSI	GKGCMC	1 cut(s)	919
BseXI	GCAGC	8 cut(s)	272, 279, 304, 548, 681, 829, 841, 988
BseYI	CCCAGC	1 cut(s)	184
BshFI	GGCC	2 cut(s)	54, 308
BsiHKAI	GWGCWC	1 cut(s)	919
BslFI	GGGAC	1 cut(s)	15
BslI	CCNNNNNNNGG	3 cut(s)	38, 605, 659
BsmFI	GGGAC	1 cut(s)	15
BsnI	GGCC	2 cut(s)	54, 308
Bsp1286I	GDGCHC	2 cut(s)	185, 919
Bsp1407I	TGTACA	1 cut(s)	773
Bsp143I	GATC	2 cut(s)	355, 839
Bsp1720I	GCTNAGC	1 cut(s)	744
Bsp19I	CCATGG	1 cut(s)	990
BspANI	GGCC	2 cut(s)	54, 308
BspCNI	CTCAG	4 cut(s)	124, 184, 694, 736
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	2 cut(s)	297, 538
BspPI	GGATC	2 cut(s)	350, 847
BsrDI	GCAATG	1 cut(s)	781
BsrGI	TGTACA	1 cut(s)	773
BssECI	CCNNGG	2 cut(s)	924, 990
BssMI	GATC	2 cut(s)	355, 839
BssT1I	CCWWGG	1 cut(s)	990
Bst2UI	CCWGG	2 cut(s)	272, 551
Bst4CI	ACNGT	1 cut(s)	205
BstAUI	TGTACA	1 cut(s)	773
BstC8I	GCNNGC	4 cut(s)	290, 534, 674, 931
BstDEI	CTNAG	6 cut(s)	111, 148, 192, 702, 744, 1004
BstDSI	CCRYGG	2 cut(s)	924, 990
BstF5I	GGATG	4 cut(s)	136, 154, 268, 646
BstKTI	GATC	2 cut(s)	358, 842
BstMBI	GATC	2 cut(s)	355, 839
BstMWI	GCNNNNNNNGC	3 cut(s)	314, 817, 826
BstNI	CCWGG	2 cut(s)	272, 551
BstNSI	RCATGY	2 cut(s)	292, 1000
BstSCI	CCNGG	2 cut(s)	270, 549
BstSFI	CTRYAG	2 cut(s)	293, 534
BstSLI	GKGCMC	1 cut(s)	919
BstV1I	GCAGC	8 cut(s)	272, 279, 304, 548, 681, 829, 841, 988
BstX2I	RGATCY	1 cut(s)	839
BstYI	RGATCY	1 cut(s)	839
BsuRI	GGCC	2 cut(s)	54, 308
BtgI	CCRYGG	2 cut(s)	924, 990
BtsCI	GGATG	4 cut(s)	136, 154, 268, 646
Cac8I	GCNNGC	4 cut(s)	290, 534, 674, 931
CaiI	CAGNNNCTG	1 cut(s)	191
Cfr13I	GGNCC	1 cut(s)	29
CsiI	ACCWGGT	1 cut(s)	549
Csp6I	GTAC	4 cut(s)	171, 241, 520, 774
CviAII	CATG	5 cut(s)	56, 289, 901, 991, 997
CviQI	GTAC	4 cut(s)	171, 241, 520, 774
DdeI	CTNAG	6 cut(s)	111, 148, 192, 702, 744, 1004
DpnI	GATC	2 cut(s)	357, 841
DpnII	GATC	2 cut(s)	355, 839
EaeI	YGGCCR	2 cut(s)	52, 306
Eco130I	CCWWGG	1 cut(s)	990
Eco24I	GRGCYC	1 cut(s)	185
Eco32I	GATATC	1 cut(s)	502
Eco47I	GGWCC	1 cut(s)	29
EcoRI	GAATTC	1 cut(s)	494
EcoRII	CCWGG	2 cut(s)	270, 549
EcoRV	GATATC	1 cut(s)	502
EcoT14I	CCWWGG	1 cut(s)	990
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	1 cut(s)	990
FaeI	CATG	5 cut(s)	59, 292, 904, 994, 1000
FaqI	GGGAC	1 cut(s)	15
FatI	CATG	5 cut(s)	55, 288, 900, 990, 996
Fnu4HI	GCNGC	8 cut(s)	286, 293, 318, 537, 670, 818, 830, 977
FokI	GGATG	4 cut(s)	123, 141, 275, 653
FriOI	GRGCYC	1 cut(s)	185
Fsp4HI	GCNGC	8 cut(s)	286, 293, 318, 537, 670, 818, 830, 977
GluI	GCNGC	8 cut(s)	286, 293, 318, 537, 670, 818, 830, 977
GsaI	CCCAGC	1 cut(s)	188
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	2 cut(s)	54, 308
Hin1II	CATG	5 cut(s)	59, 292, 904, 994, 1000
HinfI	GANTC	7 cut(s)	116, 389, 419, 439, 562, 698, 767
HphI	GGTGA	2 cut(s)	357, 398
Hpy166II	GTNNAC	4 cut(s)	592, 776, 917, 956
Hpy188I	TCNGA	8 cut(s)	193, 351, 400, 418, 455, 574, 703, 1007
Hpy188III	TCNNGA	6 cut(s)	113, 260, 653, 710, 758, 964
Hpy8I	GTNNAC	4 cut(s)	592, 776, 917, 956
HpyAV	CCTTC	5 cut(s)	491, 551, 607, 653, 875
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	2 cut(s)	173, 541
HpyCH4V	TGCA	8 cut(s)	92, 102, 288, 295, 536, 817, 917, 1000
HpyF10VI	GCNNNNNNNGC	3 cut(s)	314, 817, 826
HpyF3I	CTNAG	6 cut(s)	111, 148, 192, 702, 744, 1004
HpySE526I	ACGT	2 cut(s)	173, 541
Hsp92II	CATG	5 cut(s)	59, 292, 904, 994, 1000
Kzo9I	GATC	2 cut(s)	355, 839
Lsp1109I	GCAGC	8 cut(s)	272, 279, 304, 548, 681, 829, 841, 988
LweI	GCATC	2 cut(s)	578, 757
MabI	ACCWGGT	1 cut(s)	549
MaeII	ACGT	2 cut(s)	173, 541
MaeIII	GTNAC	3 cut(s)	106, 215, 729
MalI	GATC	2 cut(s)	357, 841
MboI	GATC	2 cut(s)	355, 839
MboII	GAAGA	4 cut(s)	209, 248, 675, 979
MflI	RGATCY	1 cut(s)	839
MhlI	GDGCHC	2 cut(s)	185, 919
MlsI	TGGCCA	1 cut(s)	54
MluCI	AATT	3 cut(s)	448, 494, 524
MluNI	TGGCCA	1 cut(s)	54
MlyI	GAGTC	2 cut(s)	448, 692
MmeI	TCCRAC	1 cut(s)	246
Mox20I	TGGCCA	1 cut(s)	54
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	1 cut(s)	345
MslI	CAYNNNNRTG	2 cut(s)	159, 995
Msp20I	TGGCCA	1 cut(s)	54
MspR9I	CCNGG	2 cut(s)	272, 551
MvaI	CCWGG	2 cut(s)	272, 551
MwoI	GCNNNNNNNGC	3 cut(s)	314, 817, 826
NcoI	CCATGG	1 cut(s)	990
NdeII	GATC	2 cut(s)	355, 839
NlaIII	CATG	5 cut(s)	59, 292, 904, 994, 1000
NlaIV	GGNNCC	1 cut(s)	31
NspI	RCATGY	2 cut(s)	292, 1000
PaeI	GCATGC	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	859
PfeI	GAWTC	5 cut(s)	116, 389, 419, 562, 767
PflMI	CCANNNNNTGG	1 cut(s)	605
PfoI	TCCNGGA	1 cut(s)	270
PkrI	GCNGC	8 cut(s)	287, 294, 319, 538, 671, 819, 831, 978
PleI	GAGTC	2 cut(s)	447, 692
PpsI	GAGTC	2 cut(s)	447, 692
Psp6I	CCWGG	2 cut(s)	270, 549
PspFI	CCCAGC	1 cut(s)	184
PspGI	CCWGG	2 cut(s)	270, 549
PspN4I	GGNNCC	1 cut(s)	31
PspPI	GGNCC	1 cut(s)	29
PstI	CTGCAG	2 cut(s)	297, 538
PstNI	CAGNNNCTG	1 cut(s)	191
PsuI	RGATCY	1 cut(s)	839
RsaI	GTAC	4 cut(s)	172, 242, 521, 775
RsaNI	GTAC	4 cut(s)	171, 241, 520, 774
RseI	CAYNNNNRTG	2 cut(s)	159, 995
SaqAI	TTAA	1 cut(s)	345
SatI	GCNGC	8 cut(s)	286, 293, 318, 537, 670, 818, 830, 977
Sau3AI	GATC	2 cut(s)	355, 839
Sau96I	GGNCC	1 cut(s)	29
SchI	GAGTC	2 cut(s)	448, 692
ScrFI	CCNGG	2 cut(s)	272, 551
SduI	GDGCHC	2 cut(s)	185, 919
SexAI	ACCWGGT	1 cut(s)	549
SfaNI	GCATC	2 cut(s)	578, 757
SfcI	CTRYAG	2 cut(s)	293, 534
SinI	GGWCC	1 cut(s)	29
SmiMI	CAYNNNNRTG	2 cut(s)	159, 995
SmlI	CTYRAG	2 cut(s)	708, 962
SmoI	CTYRAG	2 cut(s)	708, 962
SphI	GCATGC	1 cut(s)	292
Sse9I	AATT	3 cut(s)	448, 494, 524
StyD4I	CCNGG	2 cut(s)	270, 549
StyI	CCWWGG	1 cut(s)	990
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	2 cut(s)	176, 544
TaqI	TCGA	1 cut(s)	498
TasI	AATT	3 cut(s)	448, 494, 524
TatI	WGTACW	2 cut(s)	240, 773
TfiI	GAWTC	5 cut(s)	116, 389, 419, 562, 767
Tru1I	TTAA	1 cut(s)	345
Tru9I	TTAA	1 cut(s)	345
TseI	GCWGC	8 cut(s)	285, 292, 317, 536, 669, 817, 829, 976
TspDTI	ATGAA	4 cut(s)	279, 626, 806, 951
Van91I	CCANNNNNTGG	1 cut(s)	605
VneI	GTGCAC	1 cut(s)	915
VpaK11BI	GGWCC	1 cut(s)	29
XapI	RAATTY	2 cut(s)	448, 494
XceI	RCATGY	2 cut(s)	292, 1000

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.