Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0000175

Physical Location & Seq

Genomic Coordinates Reverse (-)

73076694 .. 73078907

Gene Structure 2214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG460000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2001 bp

ATGGATACCCCCTTTGATAGATTTTCTGGTCCCATAGATGGATTTTATATTGGCCATGCCCCAACTTCAATCACTTTCAATCCAAATCTAGCAAACGAGTGCAAAGTAACTCAGGAATCCACCAATACACTTATCCATCCAGCCAACTTAGACCATCCAAGTGATTTGAGCCCAGCTTCTGAGGAAGAAACTGTTGATGTTAGTTACTCCAACAATCATGTTATCAAGTACATTAGTGATATTCTTCTGGATGAAGTCCTGGAAGACGAGAGCTGCATGCTGCAGGACTATTTGGCCGTCCAAGCTGCTGAAAAATCTTTCTATGATGTCCTTAATCCGAATGATCCTCATTCACCCAACAAGGCTTCTCTTGGTGAATCATTTTCAGATACTCTTTTGGTTTCAGATTCACTTTTTGAGAGGCAGAGTCTTGGAAATTTCGGAAATGTTGGGGAGGCAAACAAGTTCCTTCCTAATGGGGAATTCGATATCATCGACAAGAAGAGGTACGAATTACTGCCTGTAGCACGTTCTAACCTGGTGAAAGGGAATCTGGCATGCGATAAAAAAAATGATGTAAACAACCCAACAGATGGTATGAAGGGAAAGAAAAATCATCACAGAGGGGATGGAGATTATCCAGAGGAAGGGAGAAGCAGCAAGCAGTCAGTTGTTTCTGCTGATGACTCTGACCCTCAAGAAATGTTTGATAAGGTGTTACTCTGTCAAGCTGAGCATCATCATCGGAAGTGGGAATCTTGCACGCCTCATTGCTCTATGAAAAGGGAGGAAACAGAGCAGTTGCAGCAAAACAGGCAGCCTAAAGGATCTAAAACAAATCGTTCAAAGCGACAAAATAAAGATGAGGAAGGAGTAGATTTGACCACCATGCTAAATCAATGTGCACAAGCCGTGGCAAGCTATGAACAAGGAACGGCGAGTGAACTATTGAAGAAGATAAGGCAGCACTCCTCCCCCCATGGACATGCAACTCAGAGATTAGCTCACTACTTTGCCAATAGCCTAGAGGCGCGGCTTACTGGTGTCGGAACCCCATCATTTTCACCTCTCTTTAGTAGACAGACATCAGCTGCTGAATACTTACTAGCTTACCAGGTATATACTACTTCATGCCCTTTCAAGATGATGTCACAATTATTTGCCAACAGAACAATCATGAAGCTAGCAAAAAATGAAACAAGGCTTCACGTTATTGATTTTGGTATTTCTTATGGTTTCCAATGGCCCTTCCTTATCCAACATCTCTCCGAGAGACCGAATGGACCTCCCAAGTTACACATCACAGGAATTGAGCTTCCGCAACGTGGTTTTCGACCTAGAGAAAGGGTTGAAGAGACCGGGCGTCGCCTAGCAAGGTATTGTGCAAAGTTCAATGTCCCGTTTGAGTACGATGTCATTGCTCAAGGATGGGAAACCATACAATGTGAGGATCTTAAAATTGACCGAAACGAACTGGTAGTGGTCAATTGTCTGAACCGGTTAAAGCACATACATGATGAGACGGTGATGGAGAACTCTCCGAGAGATGCCGTCCTGAAGTTGATCAAGAATATAAACCCCAACCTTTTCATTCATGGGATCATCAATGGAACACACAATACACCCTTCTTTGCCACACGGTTCAAAGAGGCACTCTTGCACTACTATGCCCTGTTTGATATGTTTGAAGCAACTGTTCCTCGTGAAGATGAACGGCGGATGATTATCGAGAGAGAAAAATGTGGTAGAGACATAATGAATATCGTAGCATGCGAGGGAGTGGAAAGGTTTGAAAGACCTGAGACATATAAGAAATGGCAGATCAGGAATGCGAGGGCTGGGTTGAAGCAGCTCCCGTTGGACCAGGAGGAGTTGAAGAAAGTGAAGAACTTGTATAAGAGTTATCATAATGATTTTAGAGTTGAAGAAGATGGGCAGTGGATACTGCAGGGATGGAAAGGAAGGATCCTCCGGGCTCTTTCACTTTGGACTCCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

666

Amino Acids

76.24

Weight (kDa)

6.2

Isoelectric Point (pI)

49.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	295 - 664	1.1e-117	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca	FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica	MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica	Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis	pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis	RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata	RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora	Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa	Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha	Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana	Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	593
AccI	GTMKAC	1 cut(s)	1078
AccII	CGCG	1 cut(s)	1033
AciI	CCGC	3 cut(s)	1033, 1319, 1717
AclWI	GGATC	6 cut(s)	338, 835, 1458, 1607, 1960, 1973
AcoI	YGGCCR	2 cut(s)	52, 294
AcsI	RAATTY	2 cut(s)	436, 482
AcuI	CTGAAG	1 cut(s)	1577
AcyI	GRCGYC	1 cut(s)	1363
AfaI	GTAC	3 cut(s)	230, 509, 1409
AfiI	CCNNNNNNNGG	4 cut(s)	38, 593, 647, 1325
AgeI	ACCGGT	1 cut(s)	1497
AhdI	GACNNNNNGTC	1 cut(s)	1362
AjnI	CCWGG	4 cut(s)	258, 537, 1113, 1863
Alw21I	GWGCWC	1 cut(s)	907
Alw26I	GTCTC	5 cut(s)	1267, 1349, 1514, 1743, 1796
Alw44I	GTGCAC	1 cut(s)	903
AlwI	GGATC	6 cut(s)	338, 835, 1458, 1607, 1960, 1973
AlwNI	CAGNNNCTG	2 cut(s)	179, 1094
AoxI	GGCC	3 cut(s)	52, 294, 1244
ApaLI	GTGCAC	1 cut(s)	903
ApeKI	GCWGC	9 cut(s)	273, 280, 305, 657, 805, 817, 964, 1091, 1849
ApoI	RAATTY	2 cut(s)	436, 482
AsiGI	ACCGGT	1 cut(s)	1497
AspLEI	GCGC	1 cut(s)	1033
AspS9I	GGNCC	4 cut(s)	29, 1245, 1283, 1861
AsuC2I	CCSGG	2 cut(s)	1360, 1973
AsuHPI	GGTGA	5 cut(s)	345, 386, 553, 1056, 1537
AsuNHI	GCTAGC	1 cut(s)	1183
AvaII	GGWCC	3 cut(s)	29, 1283, 1861
BaeGI	GKGCMC	1 cut(s)	907
BalI	TGGCCA	1 cut(s)	54
BamHI	GGATCC	1 cut(s)	1965
BanII	GRGCYC	2 cut(s)	173, 1978
BauI	CACGAG	1 cut(s)	1701
BbsI	GAAGAC	1 cut(s)	270
Bbv12I	GWGCWC	1 cut(s)	907
BbvI	GCAGC	9 cut(s)	260, 267, 292, 669, 817, 829, 976, 1078, 1861
BceAI	ACGGC	5 cut(s)	281, 896, 951, 1535, 1730
BcgI	CGANNNNNNTGC	4 cut(s)	725, 759, 1400, 1434
BciT130I	CCWGG	4 cut(s)	260, 539, 1115, 1865
BciVI	GTATCC	1 cut(s)	1935
BclI	TGATCA	1 cut(s)	1563
BcnI	CCSGG	2 cut(s)	1360, 1973
BcoDI	GTCTC	5 cut(s)	1267, 1349, 1514, 1743, 1796
BfaI	CTAG	7 cut(s)	89, 1025, 1106, 1184, 1338, 1370, 1999
BfmI	CTRYAG	3 cut(s)	281, 522, 1946
BfuI	GTATCC	1 cut(s)	1935
BlpI	GCTNAGC	1 cut(s)	732
Bme1390I	CCNGG	6 cut(s)	260, 539, 1115, 1360, 1865, 1973
Bme18I	GGWCC	3 cut(s)	29, 1283, 1861
BmeRI	GACNNNNNGTC	1 cut(s)	1362
BmgT120I	GGNCC	4 cut(s)	29, 1245, 1283, 1861
BmiI	GGNNCC	3 cut(s)	31, 1051, 1967
BmrFI	CCNGG	6 cut(s)	260, 539, 1115, 1360, 1865, 1973
BmsI	GCATC	2 cut(s)	745, 1537
BmtI	GCTAGC	1 cut(s)	1187
BpiI	GAAGAC	1 cut(s)	270
BplI	GAGNNNNNCTC	2 cut(s)	988, 1020
Bpu1102I	GCTNAGC	1 cut(s)	732
BpuEI	CTTGAG	2 cut(s)	681, 1407
BpuMI	CCSGG	2 cut(s)	1360, 1973
BsaBI	GATNNNNATC	1 cut(s)	1724
BsaHI	GRCGYC	1 cut(s)	1363
BsaI	GGTCTC	2 cut(s)	1267, 1349
BsaJI	CCNNGG	2 cut(s)	912, 979
BsaWI	WCCGGW	1 cut(s)	1497
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 593, 647, 1325
Bse118I	RCCGGY	1 cut(s)	1497
Bse1I	ACTGG	2 cut(s)	1045, 1479
Bse3DI	GCAATG	2 cut(s)	769, 1416
Bse8I	GATNNNNATC	1 cut(s)	1724
BseBI	CCWGG	4 cut(s)	260, 539, 1115, 1865
BseDI	CCNNGG	2 cut(s)	912, 979
BseGI	GGATG	7 cut(s)	136, 154, 256, 634, 1433, 1725, 1958
BseJI	GATNNNNATC	1 cut(s)	1724
BseLI	CCNNNNNNNGG	4 cut(s)	38, 593, 647, 1325
BseMI	GCAATG	2 cut(s)	769, 1416
BseMII	CTCAG	5 cut(s)	125, 171, 723, 1007, 1791
BseNI	ACTGG	2 cut(s)	1045, 1479
BseRI	GAGGAG	2 cut(s)	961, 1883
BseSI	GKGCMC	1 cut(s)	907
BseXI	GCAGC	9 cut(s)	260, 267, 292, 669, 817, 829, 976, 1078, 1861
BseYI	CCCAGC	2 cut(s)	172, 1838
Bsh1236I	CGCG	1 cut(s)	1033
BshFI	GGCC	3 cut(s)	54, 296, 1246
BshTI	ACCGGT	1 cut(s)	1497
BsiHKAI	GWGCWC	1 cut(s)	907
BsiSI	CCGG	3 cut(s)	1359, 1498, 1972
BslFI	GGGAC	2 cut(s)	15, 1382
BslI	CCNNNNNNNGG	4 cut(s)	38, 593, 647, 1325
BsmAI	GTCTC	5 cut(s)	1267, 1349, 1514, 1743, 1796
BsmBI	CGTCTC	1 cut(s)	1514
BsmFI	GGGAC	2 cut(s)	15, 1382
BsmI	GAATGC	1 cut(s)	1834
BsnI	GGCC	3 cut(s)	54, 296, 1246
Bso31I	GGTCTC	2 cut(s)	1267, 1349
Bsp1286I	GDGCHC	3 cut(s)	173, 907, 1978
Bsp143I	GATC	7 cut(s)	343, 827, 1450, 1563, 1599, 1821, 1965
Bsp1720I	GCTNAGC	1 cut(s)	732
Bsp19I	CCATGG	1 cut(s)	979
BspACI	CCGC	3 cut(s)	1033, 1319, 1717
BspANI	GGCC	3 cut(s)	54, 296, 1246
BspCNI	CTCAG	5 cut(s)	124, 172, 724, 1006, 1792
BspFNI	CGCG	1 cut(s)	1033
BspHI	TCATGA	1 cut(s)	1176
BspLI	GGNNCC	3 cut(s)	31, 1051, 1967
BspMAI	CTGCAG	2 cut(s)	285, 1950
BspOI	GCTAGC	1 cut(s)	1187
BspPI	GGATC	6 cut(s)	338, 835, 1458, 1607, 1960, 1973
BspTNI	GGTCTC	2 cut(s)	1267, 1349
BsrDI	GCAATG	2 cut(s)	769, 1416
BsrFI	RCCGGY	1 cut(s)	1497
BsrI	ACTGG	2 cut(s)	1045, 1479
BssAI	RCCGGY	1 cut(s)	1497
BssECI	CCNNGG	2 cut(s)	912, 979
BssMI	GATC	7 cut(s)	343, 827, 1450, 1563, 1599, 1821, 1965
BssNI	GRCGYC	1 cut(s)	1363
BssSI	CACGAG	1 cut(s)	1701
BssT1I	CCWWGG	1 cut(s)	979
Bst2BI	CACGAG	1 cut(s)	1701
Bst2UI	CCWGG	4 cut(s)	260, 539, 1115, 1865
Bst4CI	ACNGT	4 cut(s)	193, 1525, 1641, 1696
Bst6I	CTCTTC	2 cut(s)	497, 1347
BstACI	GRCGYC	1 cut(s)	1363
BstC8I	GCNNGC	7 cut(s)	278, 559, 662, 764, 919, 1185, 1771
BstDEI	CTNAG	6 cut(s)	111, 148, 180, 732, 993, 1800
BstDSI	CCRYGG	2 cut(s)	912, 979
BstF5I	GGATG	7 cut(s)	136, 154, 256, 634, 1433, 1725, 1958
BstFNI	CGCG	1 cut(s)	1033
BstHHI	GCGC	1 cut(s)	1033
BstKTI	GATC	7 cut(s)	346, 830, 1453, 1566, 1602, 1824, 1968
BstMAI	GTCTC	5 cut(s)	1267, 1349, 1514, 1743, 1796
BstMBI	GATC	7 cut(s)	343, 827, 1450, 1563, 1599, 1821, 1965
BstMWI	GCNNNNNNNGC	3 cut(s)	302, 805, 814
BstNI	CCWGG	4 cut(s)	260, 539, 1115, 1865
BstNSI	RCATGY	4 cut(s)	280, 561, 989, 1773
BstSCI	CCNGG	6 cut(s)	258, 537, 1113, 1358, 1863, 1971
BstSFI	CTRYAG	3 cut(s)	281, 522, 1946
BstSLI	GKGCMC	1 cut(s)	907
BstUI	CGCG	1 cut(s)	1033
BstV1I	GCAGC	9 cut(s)	260, 267, 292, 669, 817, 829, 976, 1078, 1861
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	3 cut(s)	827, 1450, 1965
BstYI	RGATCY	3 cut(s)	827, 1450, 1965
BsuI	GTATCC	1 cut(s)	1935
BsuRI	GGCC	3 cut(s)	54, 296, 1246
BtgI	CCRYGG	2 cut(s)	912, 979
BtsCI	GGATG	7 cut(s)	136, 154, 256, 634, 1433, 1725, 1958
BtsI	GCAGTG	1 cut(s)	1943
BtsIMutI	CAGTG	1 cut(s)	1943
Cac8I	GCNNGC	7 cut(s)	278, 559, 662, 764, 919, 1185, 1771
CaiI	CAGNNNCTG	2 cut(s)	179, 1094
CciI	TCATGA	1 cut(s)	1176
CfoI	GCGC	1 cut(s)	1033
Cfr10I	RCCGGY	1 cut(s)	1497
Cfr13I	GGNCC	4 cut(s)	29, 1245, 1283, 1861
CseI	GACGC	1 cut(s)	1352
CsiI	ACCWGGT	2 cut(s)	537, 1113
Csp6I	GTAC	3 cut(s)	229, 508, 1408
CspAI	ACCGGT	1 cut(s)	1497
CviQI	GTAC	3 cut(s)	229, 508, 1408
DdeI	CTNAG	6 cut(s)	111, 148, 180, 732, 993, 1800
DpnI	GATC	7 cut(s)	345, 829, 1452, 1565, 1601, 1823, 1967
DpnII	GATC	7 cut(s)	343, 827, 1450, 1563, 1599, 1821, 1965
DriI	GACNNNNNGTC	1 cut(s)	1362
EaeI	YGGCCR	2 cut(s)	52, 294
Eam1104I	CTCTTC	2 cut(s)	497, 1347
Eam1105I	GACNNNNNGTC	1 cut(s)	1362
EarI	CTCTTC	2 cut(s)	497, 1347
EciI	GGCGGA	1 cut(s)	1732
Eco130I	CCWWGG	1 cut(s)	979
Eco24I	GRGCYC	2 cut(s)	173, 1978
Eco31I	GGTCTC	2 cut(s)	1267, 1349
Eco32I	GATATC	1 cut(s)	490
Eco47I	GGWCC	3 cut(s)	29, 1283, 1861
Eco57I	CTGAAG	1 cut(s)	1577
EcoRI	GAATTC	1 cut(s)	482
EcoRII	CCWGG	4 cut(s)	258, 537, 1113, 1863
EcoRV	GATATC	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	979
EcoT38I	GRGCYC	2 cut(s)	173, 1978
ErhI	CCWWGG	1 cut(s)	979
Esp3I	CGTCTC	1 cut(s)	1514
FaqI	GGGAC	2 cut(s)	15, 1382
FbaI	TGATCA	1 cut(s)	1563
FblI	GTMKAC	1 cut(s)	1078
FokI	GGATG	7 cut(s)	123, 141, 263, 641, 1440, 1732, 1965
FriOI	GRGCYC	2 cut(s)	173, 1978
FspBI	CTAG	7 cut(s)	89, 1025, 1106, 1184, 1338, 1370, 1999
GlaI	GCGC	1 cut(s)	1032
GsaI	CCCAGC	2 cut(s)	176, 1842
HaeIII	GGCC	3 cut(s)	54, 296, 1246
HapII	CCGG	3 cut(s)	1359, 1498, 1972
HgaI	GACGC	1 cut(s)	1352
HhaI	GCGC	1 cut(s)	1033
Hin1I	GRCGYC	1 cut(s)	1363
Hin6I	GCGC	1 cut(s)	1031
HinP1I	GCGC	1 cut(s)	1031
HinfI	GANTC	8 cut(s)	116, 377, 407, 427, 550, 686, 755, 1990
HpaII	CCGG	3 cut(s)	1359, 1498, 1972
HphI	GGTGA	5 cut(s)	345, 386, 553, 1056, 1537
Hpy166II	GTNNAC	4 cut(s)	580, 905, 944, 1079
Hpy8I	GTNNAC	4 cut(s)	580, 905, 944, 1079
Hpy99I	CGWCG	1 cut(s)	1368
HpyAV	CCTTC	7 cut(s)	479, 595, 641, 863, 1258, 1636, 1956
HpyCH4III	ACNGT	4 cut(s)	193, 1525, 1641, 1696
HpyCH4IV	ACGT	3 cut(s)	529, 1209, 1324
HpyF10VI	GCNNNNNNNGC	3 cut(s)	302, 805, 814
HpyF3I	CTNAG	6 cut(s)	111, 148, 180, 732, 993, 1800
HpySE526I	ACGT	3 cut(s)	529, 1209, 1324
Hsp92I	GRCGYC	1 cut(s)	1363
HspAI	GCGC	1 cut(s)	1031
Ksp22I	TGATCA	1 cut(s)	1563
Kzo9I	GATC	7 cut(s)	343, 827, 1450, 1563, 1599, 1821, 1965
LmnI	GCTCC	1 cut(s)	1857
Lsp1109I	GCAGC	9 cut(s)	260, 267, 292, 669, 817, 829, 976, 1078, 1861
LweI	GCATC	2 cut(s)	745, 1537
MabI	ACCWGGT	2 cut(s)	537, 1113
MaeI	CTAG	7 cut(s)	89, 1025, 1106, 1184, 1338, 1370, 1999
MaeII	ACGT	3 cut(s)	529, 1209, 1324
MaeIII	GTNAC	5 cut(s)	106, 203, 717, 1149, 1293
MalI	GATC	7 cut(s)	345, 829, 1452, 1565, 1601, 1823, 1967
MboI	GATC	7 cut(s)	343, 827, 1450, 1563, 1599, 1821, 1965
MfeI	CAATTG	1 cut(s)	1486
MflI	RGATCY	3 cut(s)	827, 1450, 1965
MhlI	GDGCHC	3 cut(s)	173, 907, 1978
MlsI	TGGCCA	1 cut(s)	54
MluCI	AATT	7 cut(s)	436, 482, 512, 1154, 1308, 1458, 1486
MluNI	TGGCCA	1 cut(s)	54
MlyI	GAGTC	3 cut(s)	436, 680, 1984
MmeI	TCCRAC	4 cut(s)	234, 1027, 1282, 1839
Mox20I	TGGCCA	1 cut(s)	54
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	3 cut(s)	333, 1455, 1502
MslI	CAYNNNNRTG	4 cut(s)	159, 984, 1512, 1665
Msp20I	TGGCCA	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	1091
MspI	CCGG	3 cut(s)	1359, 1498, 1972
MspR9I	CCNGG	6 cut(s)	260, 539, 1115, 1360, 1865, 1973
MunI	CAATTG	1 cut(s)	1486
Mva1269I	GAATGC	1 cut(s)	1834
MvaI	CCWGG	4 cut(s)	260, 539, 1115, 1865
MvnI	CGCG	1 cut(s)	1033
MwoI	GCNNNNNNNGC	3 cut(s)	302, 805, 814
NciI	CCSGG	2 cut(s)	1360, 1973
NcoI	CCATGG	1 cut(s)	979
NdeII	GATC	7 cut(s)	343, 827, 1450, 1563, 1599, 1821, 1965
NheI	GCTAGC	1 cut(s)	1183
NlaIV	GGNNCC	3 cut(s)	31, 1051, 1967
NmuCI	GTSAC	1 cut(s)	1149
NspI	RCATGY	4 cut(s)	280, 561, 989, 1773
PaeI	GCATGC	3 cut(s)	280, 561, 1773
PagI	TCATGA	1 cut(s)	1176
PcsI	WCGNNNNNNNCGW	4 cut(s)	492, 847, 1330, 1770
PctI	GAATGC	1 cut(s)	1834
PfeI	GAWTC	5 cut(s)	116, 377, 407, 550, 755
PflMI	CCANNNNNTGG	1 cut(s)	593
PfoI	TCCNGGA	1 cut(s)	258
PinAI	ACCGGT	1 cut(s)	1497
PleI	GAGTC	3 cut(s)	435, 680, 1984
PpsI	GAGTC	3 cut(s)	435, 680, 1984
Psp6I	CCWGG	4 cut(s)	258, 537, 1113, 1863
PspFI	CCCAGC	2 cut(s)	172, 1838
PspGI	CCWGG	4 cut(s)	258, 537, 1113, 1863
PspN4I	GGNNCC	3 cut(s)	31, 1051, 1967
PspPI	GGNCC	4 cut(s)	29, 1245, 1283, 1861
PsrI	GAACNNNNNNTAC	2 cut(s)	1603, 1635
PstI	CTGCAG	2 cut(s)	285, 1950
PstNI	CAGNNNCTG	2 cut(s)	179, 1094
PsuI	RGATCY	3 cut(s)	827, 1450, 1965
PvuII	CAGCTG	1 cut(s)	1091
RsaI	GTAC	3 cut(s)	230, 509, 1409
RsaNI	GTAC	3 cut(s)	229, 508, 1408
RseI	CAYNNNNRTG	4 cut(s)	159, 984, 1512, 1665
SaqAI	TTAA	3 cut(s)	333, 1455, 1502
Sau3AI	GATC	7 cut(s)	343, 827, 1450, 1563, 1599, 1821, 1965
Sau96I	GGNCC	4 cut(s)	29, 1245, 1283, 1861
SchI	GAGTC	3 cut(s)	436, 680, 1984
ScrFI	CCNGG	6 cut(s)	260, 539, 1115, 1360, 1865, 1973
SduI	GDGCHC	3 cut(s)	173, 907, 1978
SexAI	ACCWGGT	2 cut(s)	537, 1113
SfaNI	GCATC	2 cut(s)	745, 1537
SfcI	CTRYAG	3 cut(s)	281, 522, 1946
SinI	GGWCC	3 cut(s)	29, 1283, 1861
SmiMI	CAYNNNNRTG	4 cut(s)	159, 984, 1512, 1665
SmlI	CTYRAG	2 cut(s)	696, 1422
SmoI	CTYRAG	2 cut(s)	696, 1422
SphI	GCATGC	3 cut(s)	280, 561, 1773
Sse9I	AATT	7 cut(s)	436, 482, 512, 1154, 1308, 1458, 1486
SsiI	CCGC	3 cut(s)	1033, 1319, 1717
SspMI	CTAG	7 cut(s)	89, 1025, 1106, 1184, 1338, 1370, 1999
StyD4I	CCNGG	6 cut(s)	258, 537, 1113, 1358, 1863, 1971
StyI	CCWWGG	1 cut(s)	979
TaaI	ACNGT	4 cut(s)	193, 1525, 1641, 1696
TaiI	ACGT	3 cut(s)	532, 1212, 1327
TaqI	TCGA	4 cut(s)	486, 495, 1333, 1728
TaqII	GACCGA	2 cut(s)	1291, 1479
TasI	AATT	7 cut(s)	436, 482, 512, 1154, 1308, 1458, 1486
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	1 cut(s)	1036
TfiI	GAWTC	5 cut(s)	116, 377, 407, 550, 755
Tru1I	TTAA	3 cut(s)	333, 1455, 1502
Tru9I	TTAA	3 cut(s)	333, 1455, 1502
TscAI	CASTG	1 cut(s)	1943
TseFI	GTSAC	1 cut(s)	1149
TseI	GCWGC	9 cut(s)	273, 280, 305, 657, 805, 817, 964, 1091, 1849
Tsp45I	GTSAC	1 cut(s)	1149
TspRI	CASTG	1 cut(s)	1943
Van91I	CCANNNNNTGG	1 cut(s)	593
VneI	GTGCAC	1 cut(s)	903
VpaK11BI	GGWCC	3 cut(s)	29, 1283, 1861
XapI	RAATTY	2 cut(s)	436, 482
XceI	RCATGY	4 cut(s)	280, 561, 989, 1773
XmiI	GTMKAC	1 cut(s)	1078
XspI	CTAG	7 cut(s)	89, 1025, 1106, 1184, 1338, 1370, 1999

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.