Rh5DG460900

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000175
Physical Location & Seq
Forward (+)
73228432 .. 73230411
1980 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG460900.1

Sequence Viewer

Length: 1980 bp
ATGGATACCCTTCTTAAAAGATTTTATGGCTCAGCTTCAGTCTCTTCTAATCAAAATCTTGCAAATAGATTCCAAGTAAACCATGAATCCACAAATCCACTTTTTCCAACCAACTTTAACCATCCTTATCGTCCATGTACACCTTCGGAGGAAGATACTTGTGACAATAATGACTGCAATAACCCTATGCTCAAGTACATAAGTGATACTCTTCTTGAAGAAGACCTAGAGGGTAAACCTTGCATGTTGCAAAACTGTTTGGCACTCCAAGCTGCTGAAAAATCTTTCTATGATCTCCTCAATCCAAAGTATCGCCCTTCATTTGACCAACCTCCCCTTTCTGTGTACCAAAGCTTTGAGAACTCAGATGATGATTCCACACAGAGTTGTCATAGTAGTATTGGCTCTATTACTCCTGTTACTCCTAAGACAAATCCATTTCATGTCGAATCTTCCTTTGCCGAGACTATATCAGATACCATTTTGGTTTCACATTCACTTTCTCAGATGGAAAGACTTGGGTTTCTAGGAGTAAGGGAAGCAATCAAAAATGTGGTTTATGAGCCAGAGAATGACAGCTACAGCTCAACAAATGGACCAAAGGGAAAGAAACATCAGCAAAGGGAGGATGGTAATAATCCATACAATGGGAGAAGCAACAAGCAGTCAGCAGCTTCTGCTCAGGACTTTGAGCCGCAAGAAATGTTTGGAAAGGTGTTTCTCTGTCAGGGAGAAAATCATGAGTCCGAGTGTTGTTCTCCTCGTGAATTTATTAAATCTGAGGAAAGTGGGAGGTTGTGGCTTAAGAGACAACCAAGAGGATCAAAGAAACACAACAACAAAGTAGTGGATGTATGCACATTGCTAAATCAGTGTGCACAAGCCATGGCAAGCTATGATCAGCGCGCTGTGAATGAACTACTCAAGCAGATAAGACAACATTCTTCCCCCCATGGTGATGCAACCCAAAGGTTATCTCATTACTTTGCCGATGGGTTAGAGGCACGGTTGGCTGGCACCATGACCCCATCATATTCGCCTGTTGCAAGTATGCAGACATCAGCTGCAGATATCTTAAGAGCTCACCGGTTATATGTCACTGCATCCCCTTTAAAGAAAATGTCAAACTTTGTTGCCAATACAACCATCATGGAATTGGCAAAAGACGCTACAAGGCTTCACATTATTGATTTCGGCATTTCTTACGGTTTCCAATGGCCCTGTCTTATCCAACATATCTCAGAGAGACCCGGTGGACCTCCTCAGATACAAATCACAGCAATTGAGCTTCCCCAACCAGGTTTTCGACCTACAGAAAGGGTTGAAGAGACCGGGCGTCGTCTAGCAAGGTATTGTGCAAAGTTCAATGTCCCGTTTGAGTACAATGTCATTGCACAGAAATGGGAATCTATCAGAGTTGAGGATCTTAATATTGACAGAAATGAGCTCATCGTGGTGAATTGTATGCACCGGTTAAGGCACATACCTGATGAGACAGTGATGGTGAGCAGTCCAAGAGACAGAGTACTAAAGTTGATTAAGAAAATTAATCCAGACCTTTTCGTTCATGGGATTATCAATGGGACATACAGTCCACCCTTTTTTGTCACGCGGTTCAAAGAGGCACTCTTCCATTTCGGTGCACTGTTTGATATGTTTGAGGCCATTGTTCCTCGTGAAGATCAATGGAGGCAGATGTTCGAAAGAGAAATATATGGGAGGGACATAATAAATGTTGTAGCATGCGAGGGACTGGAAAGAGTTGAAAGGCCCGAGACATACAAGCAATGGAATCTCAGGACTCTCAGGACTGGGTTCAAGCAGGTGCCATTAGAGCAGGATTGCTTGATGAAAGTGAAGAGTATGTTAAAGTTGACGGGTTATCATAAGGACTTTAGAATTGATGAAGATGGGGAGTGGATGCTGCAGGGATGGAAAGGAAGAATCGTTATGGCTCTCTCTTTTTGGAAACCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS RVT_2

Protein Analysis

659

Amino Acids

75.42

Weight (kDa)

6.46

Isoelectric Point (pI)

47.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 287 - 657 1.3e-120 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1813
Acc36I ACCTGC 1 cut(s) 1813
AccB1I GGYRCC 2 cut(s) 1016, 1825
AccB7I CCANNNNNTGG 1 cut(s) 647
AccII CGCG 2 cut(s) 906, 1612
AciI CCGC 2 cut(s) 695, 1612
AclWI GGATC 2 cut(s) 829, 1431
AcsI RAATTY 1 cut(s) 767
AcuI CTGAAG 1 cut(s) 21
AcyI GRCGYC 1 cut(s) 1336
AfaI GTAC 5 cut(s) 139, 197, 347, 1382, 1527
AfiI CCNNNNNNNGG 2 cut(s) 647, 1298
AflII CTTAAG 2 cut(s) 803, 1075
AgeI ACCGGT 2 cut(s) 1086, 1470
AgsI TTSAA 6 cut(s) 218, 1325, 1366, 1618, 1766, 1819
AhdI GACNNNNNGTC 2 cut(s) 1335, 1590
AjnI CCWGG 1 cut(s) 1297
AjuI GAANNNNNNNTTGG 2 cut(s) 1287, 1319
Alw21I GWGCWC 4 cut(s) 880, 1084, 1449, 1645
Alw26I GTCTC 8 cut(s) 46, 458, 802, 1240, 1322, 1487, 1512, 1769
Alw44I GTGCAC 2 cut(s) 876, 1641
AlwI GGATC 2 cut(s) 829, 1431
AlwNI CAGNNNCTG 1 cut(s) 677
Ama87I CYCGRG 1 cut(s) 1772
AoxI GGCC 3 cut(s) 1217, 1662, 1769
ApaLI GTGCAC 2 cut(s) 876, 1641
ApeKI GCWGC 4 cut(s) 272, 671, 1064, 1924
ApoI RAATTY 1 cut(s) 767
AseI ATTAAT 1 cut(s) 1548
AsiGI ACCGGT 2 cut(s) 1086, 1470
AspLEI GCGC 2 cut(s) 906, 908
AspS9I GGNCC 4 cut(s) 596, 1218, 1256, 1770
AsuC2I CCSGG 2 cut(s) 1251, 1333
AsuHPI GGTGA 4 cut(s) 968, 1076, 1468, 1516
AsuII TTCGAA 1 cut(s) 1701
AvaI CYCGRG 1 cut(s) 1772
AvaII GGWCC 2 cut(s) 596, 1256
BaeGI GKGCMC 2 cut(s) 880, 1645
BanI GGYRCC 2 cut(s) 1016, 1825
BanII GRGCYC 2 cut(s) 1084, 1449
BauI CACGAG 2 cut(s) 762, 1674
BbsI GAAGAC 1 cut(s) 228
Bbv12I GWGCWC 4 cut(s) 880, 1084, 1449, 1645
BbvI GCAGC 4 cut(s) 259, 683, 1051, 1911
BccI CCATC 9 cut(s) 129, 502, 623, 986, 1036, 1154, 1495, 1904, 1926
BciT130I CCWGG 1 cut(s) 1299
BclI TGATCA 1 cut(s) 898
BcnI CCSGG 2 cut(s) 1251, 1333
BcoDI GTCTC 8 cut(s) 46, 458, 802, 1240, 1322, 1487, 1512, 1769
BfaI CTAG 3 cut(s) 227, 527, 1343
BfmI CTRYAG 4 cut(s) 580, 1065, 1311, 1925
BfrI CTTAAG 2 cut(s) 803, 1075
BfuAI ACCTGC 1 cut(s) 1813
BisI GCNGC 5 cut(s) 273, 672, 695, 1065, 1925
BlpI GCTNAGC 1 cut(s) 31
BlsI GCNGC 5 cut(s) 274, 673, 696, 1066, 1926
BmcAI AGTACT 1 cut(s) 1527
Bme1390I CCNGG 3 cut(s) 1251, 1299, 1333
Bme18I GGWCC 2 cut(s) 596, 1256
BmeRI GACNNNNNGTC 2 cut(s) 1335, 1590
BmeT110I CYCGRG 1 cut(s) 1772
BmgT120I GGNCC 4 cut(s) 596, 1218, 1256, 1770
BmiI GGNNCC 2 cut(s) 1018, 1827
BmrFI CCNGG 3 cut(s) 1251, 1299, 1333
BmrI ACTGGG 1 cut(s) 1821
BmsI GCATC 3 cut(s) 949, 1112, 1911
BmuI ACTGGG 1 cut(s) 1821
BpiI GAAGAC 1 cut(s) 228
Bpu10I CCTNAGC 1 cut(s) 681
Bpu1102I GCTNAGC 1 cut(s) 31
Bpu14I TTCGAA 1 cut(s) 1701
BpuEI CTTGAG 2 cut(s) 176, 908
BpuMI CCSGG 2 cut(s) 1251, 1333
BsaBI GATNNNNATC 1 cut(s) 1271
BsaHI GRCGYC 1 cut(s) 1336
BsaI GGTCTC 2 cut(s) 1240, 1322
BsaJI CCNNGG 2 cut(s) 885, 952
BsaWI WCCGGW 2 cut(s) 1086, 1470
Bsc4I CCNNNNNNNGG 2 cut(s) 647, 1298
Bse118I RCCGGY 2 cut(s) 1086, 1470
Bse1I ACTGG 2 cut(s) 1758, 1816
Bse3DI GCAATG 3 cut(s) 860, 1389, 1793
Bse8I GATNNNNATC 1 cut(s) 1271
BseBI CCWGG 1 cut(s) 1299
BseDI CCNNGG 2 cut(s) 885, 952
BseGI GGATG 6 cut(s) 121, 634, 856, 1103, 1926, 1937
BseJI GATNNNNATC 1 cut(s) 1271
BseLI CCNNNNNNNGG 2 cut(s) 647, 1298
BseMI GCAATG 3 cut(s) 860, 1389, 1793
BseMII CTCAG 9 cut(s) 45, 378, 518, 695, 771, 1254, 1277, 1810, 1819
BseNI ACTGG 2 cut(s) 1758, 1816
BsePI GCGCGC 1 cut(s) 904
BseRI GAGGAG 3 cut(s) 287, 750, 1251
BseSI GKGCMC 2 cut(s) 880, 1645
BseXI GCAGC 4 cut(s) 259, 683, 1051, 1911
Bsh1236I CGCG 2 cut(s) 906, 1612
BshFI GGCC 3 cut(s) 1219, 1664, 1771
BshNI GGYRCC 2 cut(s) 1016, 1825
BshTI ACCGGT 2 cut(s) 1086, 1470
BsiHKAI GWGCWC 4 cut(s) 880, 1084, 1449, 1645
BsiHKCI CYCGRG 1 cut(s) 1772
BsiSI CCGG 4 cut(s) 1087, 1251, 1332, 1471
BslFI GGGAC 4 cut(s) 1355, 1597, 1736, 1764
BslI CCNNNNNNNGG 2 cut(s) 647, 1298
BsmAI GTCTC 8 cut(s) 46, 458, 802, 1240, 1322, 1487, 1512, 1769
BsmFI GGGAC 4 cut(s) 1355, 1597, 1736, 1764
BsnI GGCC 3 cut(s) 1219, 1664, 1771
Bso31I GGTCTC 2 cut(s) 1240, 1322
BsoBI CYCGRG 1 cut(s) 1772
Bsp119I TTCGAA 1 cut(s) 1701
Bsp1286I GDGCHC 4 cut(s) 880, 1084, 1449, 1645
Bsp1407I TGTACA 1 cut(s) 137
Bsp143I GATC 5 cut(s) 292, 821, 898, 1423, 1681
Bsp1720I GCTNAGC 1 cut(s) 31
Bsp19I CCATGG 2 cut(s) 885, 952
BspACI CCGC 2 cut(s) 695, 1612
BspANI GGCC 3 cut(s) 1219, 1664, 1771
BspCNI CTCAG 9 cut(s) 44, 377, 517, 694, 772, 1253, 1276, 1809, 1818
BspFNI CGCG 2 cut(s) 906, 1612
BspHI TCATGA 1 cut(s) 739
BspLI GGNNCC 2 cut(s) 1018, 1827
BspMAI CTGCAG 2 cut(s) 1069, 1929
BspMI ACCTGC 1 cut(s) 1813
BspPI GGATC 2 cut(s) 829, 1431
BspT104I TTCGAA 1 cut(s) 1701
BspT107I GGYRCC 2 cut(s) 1016, 1825
BspTI CTTAAG 2 cut(s) 803, 1075
BspTNI GGTCTC 2 cut(s) 1240, 1322
BsrDI GCAATG 3 cut(s) 860, 1389, 1793
BsrFI RCCGGY 2 cut(s) 1086, 1470
BsrGI TGTACA 1 cut(s) 137
BsrI ACTGG 2 cut(s) 1758, 1816
BssAI RCCGGY 2 cut(s) 1086, 1470
BssECI CCNNGG 2 cut(s) 885, 952
BssHII GCGCGC 1 cut(s) 904
BssMI GATC 5 cut(s) 292, 821, 898, 1423, 1681
BssNI GRCGYC 1 cut(s) 1336
BssSI CACGAG 2 cut(s) 762, 1674
BssT1I CCWWGG 2 cut(s) 885, 952
Bst2BI CACGAG 2 cut(s) 762, 1674
Bst2UI CCWGG 1 cut(s) 1299
Bst4CI ACNGT 6 cut(s) 257, 1008, 1208, 1498, 1592, 1647
Bst6I CTCTTC 5 cut(s) 49, 216, 1320, 1634, 1853
BstACI GRCGYC 1 cut(s) 1336
BstAFI CTTAAG 2 cut(s) 803, 1075
BstAPI GCANNNNNTGC 1 cut(s) 677
BstAUI TGTACA 1 cut(s) 137
BstBI TTCGAA 1 cut(s) 1701
BstC8I GCNNGC 4 cut(s) 892, 906, 1015, 1744
BstDSI CCRYGG 2 cut(s) 885, 952
BstF5I GGATG 6 cut(s) 121, 634, 856, 1103, 1926, 1937
BstFNI CGCG 2 cut(s) 906, 1612
BstHHI GCGC 2 cut(s) 906, 908
BstKTI GATC 5 cut(s) 295, 824, 901, 1426, 1684
BstMAI GTCTC 8 cut(s) 46, 458, 802, 1240, 1322, 1487, 1512, 1769
BstMBI GATC 5 cut(s) 292, 821, 898, 1423, 1681
BstMWI GCNNNNNNNGC 5 cut(s) 269, 677, 1010, 1166, 1834
BstNI CCWGG 1 cut(s) 1299
BstNSI RCATGY 2 cut(s) 247, 1746
BstSCI CCNGG 3 cut(s) 1249, 1297, 1331
BstSFI CTRYAG 4 cut(s) 580, 1065, 1311, 1925
BstSLI GKGCMC 2 cut(s) 880, 1645
BstUI CGCG 2 cut(s) 906, 1612
BstV1I GCAGC 4 cut(s) 259, 683, 1051, 1911
BstV2I GAAGAC 1 cut(s) 228
BstX2I RGATCY 1 cut(s) 1423
BstYI RGATCY 1 cut(s) 1423
BsuRI GGCC 3 cut(s) 1219, 1664, 1771
BtgI CCRYGG 2 cut(s) 885, 952
BtsCI GGATG 6 cut(s) 121, 634, 856, 1103, 1926, 1937
BtsI GCAGTG 1 cut(s) 1098
BtsIMutI CAGTG 4 cut(s) 878, 1098, 1503, 1643
BveI ACCTGC 1 cut(s) 1813
Cac8I GCNNGC 4 cut(s) 892, 906, 1015, 1744
CaiI CAGNNNCTG 1 cut(s) 677
CciI TCATGA 1 cut(s) 739
CfoI GCGC 2 cut(s) 906, 908
Cfr10I RCCGGY 2 cut(s) 1086, 1470
Cfr13I GGNCC 4 cut(s) 596, 1218, 1256, 1770
CseI GACGC 2 cut(s) 1175, 1325
CsiI ACCWGGT 1 cut(s) 1297
Csp6I GTAC 5 cut(s) 138, 196, 346, 1381, 1526
CspAI ACCGGT 2 cut(s) 1086, 1470
CviQI GTAC 5 cut(s) 138, 196, 346, 1381, 1526
DpnI GATC 5 cut(s) 294, 823, 900, 1425, 1683
DpnII GATC 5 cut(s) 292, 821, 898, 1423, 1681
DraI TTTAAA 1 cut(s) 1113
DriI GACNNNNNGTC 2 cut(s) 1335, 1590
Eam1104I CTCTTC 5 cut(s) 49, 216, 1320, 1634, 1853
Eam1105I GACNNNNNGTC 2 cut(s) 1335, 1590
EarI CTCTTC 5 cut(s) 49, 216, 1320, 1634, 1853
Ecl136II GAGCTC 2 cut(s) 1082, 1447
Eco130I CCWWGG 2 cut(s) 885, 952
Eco24I GRGCYC 2 cut(s) 1084, 1449
Eco31I GGTCTC 2 cut(s) 1240, 1322
Eco32I GATATC 1 cut(s) 1072
Eco47I GGWCC 2 cut(s) 596, 1256
Eco53kI GAGCTC 2 cut(s) 1082, 1447
Eco57I CTGAAG 1 cut(s) 21
Eco88I CYCGRG 1 cut(s) 1772
EcoICRI GAGCTC 2 cut(s) 1082, 1447
EcoRII CCWGG 1 cut(s) 1297
EcoRV GATATC 1 cut(s) 1072
EcoT14I CCWWGG 2 cut(s) 885, 952
EcoT38I GRGCYC 2 cut(s) 1084, 1449
ErhI CCWWGG 2 cut(s) 885, 952
FaqI GGGAC 4 cut(s) 1355, 1597, 1736, 1764
FbaI TGATCA 1 cut(s) 898
Fnu4HI GCNGC 5 cut(s) 273, 672, 695, 1065, 1925
FokI GGATG 6 cut(s) 108, 641, 863, 1090, 1933, 1944
FriOI GRGCYC 2 cut(s) 1084, 1449
Fsp4HI GCNGC 5 cut(s) 273, 672, 695, 1065, 1925
FspBI CTAG 3 cut(s) 227, 527, 1343
GlaI GCGC 2 cut(s) 905, 907
GluI GCNGC 5 cut(s) 273, 672, 695, 1065, 1925
HaeIII GGCC 3 cut(s) 1219, 1664, 1771
HapII CCGG 4 cut(s) 1087, 1251, 1332, 1471
HgaI GACGC 2 cut(s) 1175, 1325
HhaI GCGC 2 cut(s) 906, 908
Hin1I GRCGYC 1 cut(s) 1336
Hin6I GCGC 2 cut(s) 904, 906
HinP1I GCGC 2 cut(s) 904, 906
HincII GTYRAC 1 cut(s) 1875
HindII GTYRAC 1 cut(s) 1875
HindIII AAGCTT 1 cut(s) 352
HinfI GANTC 9 cut(s) 69, 86, 374, 449, 743, 1406, 1792, 1801, 1944
HpaII CCGG 4 cut(s) 1087, 1251, 1332, 1471
HphI GGTGA 4 cut(s) 968, 1076, 1468, 1516
Hpy166II GTNNAC 9 cut(s) 79, 140, 236, 346, 878, 1256, 1595, 1643, 1875
Hpy188I TCNGA 9 cut(s) 148, 367, 475, 507, 748, 781, 1243, 1266, 1415
Hpy188III TCNNGA 8 cut(s) 215, 683, 740, 764, 1553, 1676, 1798, 1807
Hpy8I GTNNAC 9 cut(s) 79, 140, 236, 346, 878, 1256, 1595, 1643, 1875
Hpy99I CGWCG 1 cut(s) 1341
HpyAV CCTTC 3 cut(s) 20, 153, 327
HpyCH4III ACNGT 6 cut(s) 257, 1008, 1208, 1498, 1592, 1647
HpyF10VI GCNNNNNNNGC 5 cut(s) 269, 677, 1010, 1166, 1834
Hsp92I GRCGYC 1 cut(s) 1336
HspAI GCGC 2 cut(s) 904, 906
Ksp22I TGATCA 1 cut(s) 898
Kzo9I GATC 5 cut(s) 292, 821, 898, 1423, 1681
Lsp1109I GCAGC 4 cut(s) 259, 683, 1051, 1911
LweI GCATC 3 cut(s) 949, 1112, 1911
MabI ACCWGGT 1 cut(s) 1297
MaeI CTAG 3 cut(s) 227, 527, 1343
MaeIII GTNAC 4 cut(s) 161, 418, 1096, 1606
MalI GATC 5 cut(s) 294, 823, 900, 1425, 1683
MboI GATC 5 cut(s) 292, 821, 898, 1423, 1681
MfeI CAATTG 1 cut(s) 1281
MflI RGATCY 1 cut(s) 1423
MhlI GDGCHC 4 cut(s) 880, 1084, 1449, 1645
MluCI AATT 6 cut(s) 767, 1154, 1281, 1459, 1545, 1899
MlyI GAGTC 2 cut(s) 752, 1795
MmeI TCCRAC 2 cut(s) 131, 1255
MslI CAYNNNNRTG 4 cut(s) 957, 1399, 1454, 1638
MspA1I CMGCKG 1 cut(s) 1064
MspCI CTTAAG 2 cut(s) 803, 1075
MspI CCGG 4 cut(s) 1087, 1251, 1332, 1471
MspR9I CCNGG 3 cut(s) 1251, 1299, 1333
MunI CAATTG 1 cut(s) 1281
MvaI CCWGG 1 cut(s) 1299
MvnI CGCG 2 cut(s) 906, 1612
MwoI GCNNNNNNNGC 5 cut(s) 269, 677, 1010, 1166, 1834
NciI CCSGG 2 cut(s) 1251, 1333
NcoI CCATGG 2 cut(s) 885, 952
NdeII GATC 5 cut(s) 292, 821, 898, 1423, 1681
NlaIV GGNNCC 2 cut(s) 1018, 1827
NmeAIII GCCGAG 1 cut(s) 487
NmuCI GTSAC 3 cut(s) 161, 1096, 1606
NspI RCATGY 2 cut(s) 247, 1746
NspV TTCGAA 1 cut(s) 1701
PaeI GCATGC 1 cut(s) 1746
PagI TCATGA 1 cut(s) 739
PaqCI CACCTGC 1 cut(s) 1813
PauI GCGCGC 1 cut(s) 904
PfeI GAWTC 7 cut(s) 69, 86, 374, 449, 1406, 1792, 1944
PflMI CCANNNNNTGG 1 cut(s) 647
PinAI ACCGGT 2 cut(s) 1086, 1470
PkrI GCNGC 5 cut(s) 274, 673, 696, 1066, 1926
PleI GAGTC 2 cut(s) 751, 1795
PpsI GAGTC 2 cut(s) 751, 1795
PshBI ATTAAT 1 cut(s) 1548
Psp124BI GAGCTC 2 cut(s) 1084, 1449
Psp6I CCWGG 1 cut(s) 1297
PspGI CCWGG 1 cut(s) 1297
PspN4I GGNNCC 2 cut(s) 1018, 1827
PspPI GGNCC 4 cut(s) 596, 1218, 1256, 1770
PstI CTGCAG 2 cut(s) 1069, 1929
PstNI CAGNNNCTG 1 cut(s) 677
PsuI RGATCY 1 cut(s) 1423
PteI GCGCGC 1 cut(s) 904
PvuII CAGCTG 1 cut(s) 1064
RsaI GTAC 5 cut(s) 139, 197, 347, 1382, 1527
RsaNI GTAC 5 cut(s) 138, 196, 346, 1381, 1526
RseI CAYNNNNRTG 4 cut(s) 957, 1399, 1454, 1638
SacI GAGCTC 2 cut(s) 1084, 1449
SatI GCNGC 5 cut(s) 273, 672, 695, 1065, 1925
Sau3AI GATC 5 cut(s) 292, 821, 898, 1423, 1681
Sau96I GGNCC 4 cut(s) 596, 1218, 1256, 1770
ScaI AGTACT 1 cut(s) 1527
SchI GAGTC 2 cut(s) 752, 1795
ScrFI CCNGG 3 cut(s) 1251, 1299, 1333
SduI GDGCHC 4 cut(s) 880, 1084, 1449, 1645
SexAI ACCWGGT 1 cut(s) 1297
SfaNI GCATC 3 cut(s) 949, 1112, 1911
SfcI CTRYAG 4 cut(s) 580, 1065, 1311, 1925
SfuI TTCGAA 1 cut(s) 1701
SinI GGWCC 2 cut(s) 596, 1256
SmiMI CAYNNNNRTG 4 cut(s) 957, 1399, 1454, 1638
SmlI CTYRAG 4 cut(s) 191, 803, 923, 1075
SmoI CTYRAG 4 cut(s) 191, 803, 923, 1075
SphI GCATGC 1 cut(s) 1746
Sse9I AATT 6 cut(s) 767, 1154, 1281, 1459, 1545, 1899
SsiI CCGC 2 cut(s) 695, 1612
SspI AATATT 1 cut(s) 1432
SspMI CTAG 3 cut(s) 227, 527, 1343
SstI GAGCTC 2 cut(s) 1084, 1449
StyD4I CCNGG 3 cut(s) 1249, 1297, 1331
StyI CCWWGG 2 cut(s) 885, 952
TaaI ACNGT 6 cut(s) 257, 1008, 1208, 1498, 1592, 1647
TaqI TCGA 3 cut(s) 447, 1306, 1701
TasI AATT 6 cut(s) 767, 1154, 1281, 1459, 1545, 1899
TatI WGTACW 4 cut(s) 137, 195, 1380, 1525
TauI GCSGC 1 cut(s) 697
TfiI GAWTC 7 cut(s) 69, 86, 374, 449, 1406, 1792, 1944
TscAI CASTG 4 cut(s) 878, 1105, 1503, 1650
TseFI GTSAC 3 cut(s) 161, 1096, 1606
TseI GCWGC 4 cut(s) 272, 671, 1064, 1924
Tsp45I GTSAC 3 cut(s) 161, 1096, 1606
TspDTI ATGAA 7 cut(s) 99, 309, 431, 930, 1556, 1865, 1920
TspRI CASTG 4 cut(s) 878, 1105, 1503, 1650
Van91I CCANNNNNTGG 1 cut(s) 647
Vha464I CTTAAG 2 cut(s) 803, 1075
VneI GTGCAC 2 cut(s) 876, 1641
VpaK11BI GGWCC 2 cut(s) 596, 1256
VspI ATTAAT 1 cut(s) 1548
XapI RAATTY 1 cut(s) 767
XceI RCATGY 2 cut(s) 247, 1746
XcmI CCANNNNNNNNNTGG 1 cut(s) 1153
XspI CTAG 3 cut(s) 227, 527, 1343
ZrmI AGTACT 1 cut(s) 1527
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.