Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000175

Physical Location & Seq

Genomic Coordinates Forward (+)

19302054 .. 19302884

Gene Structure 831 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00015530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAAGCTAGCAAGAAATGAAACAAGGGTTCACATTATTGATTTTGGTATTTCTTATGGTTTCCAATGGCCTTGCCTTATCCAACATCTCTCCAATAGACCTAACGGACCACCTAAGTTGCATATCACAGCAATTGAGCTTCCACAACCTGGTTTTCGACCTACAGAAAGGGTTGAAGAGACTGGACATCGCCTAGCAAGGTATTGTGCAAAGTTCAGTGTGCCGTTTGAGTACAATGTCATTGCTCAAAAATGGGAAACTATTCAATGTGAGGATCTTAAACTTGACAGAAACGAGCTGGTAGTGGTTAATTGTCTGTACCGGTTAAAGCACATACATGATGAGACGGTGATGGAGAACTCTCCGAGAGATGCCGTCCTGAAGTTGATCAAGAATATAAACCCCAACCTTTTCATTCATGGGATCATCAATGGGACACACAATACACCCTTCTTTGCTACACGGTTCAGAGAGGCACTCTTGCACTACTATGCAATGTTTGATATATTTGAAGCAACCATTCCTCGTGAAGAGGAACGTCGGATGATGTTGGAGAAAGACTTCCATGGTAGAGACATAATGAATATCGTAGCATGCGAGGGAGTGGAAAGAGTTGAAAGGCCTGAGACTTACAAGAAGTGGCAGATCAGGAATGTAAGGGCTGGCTTGAAGCAGCTCCCATTGGACCAGAAACTGTTGAAGAAAGCGAAGAAATTGTCGAAGTTAATGGGTTATCATAATGATTTTAGAGTTGATGAAGATGGGCATTGGATGCTGCATGGATGGAAAGGAAGGATCATCACGGCTCTTTCATTTTGGAAACCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

276

Amino Acids

32.57

Weight (kDa)

9.21

Isoelectric Point (pI)

37.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	4 - 274	4.5e-89	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca	FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica	MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica	Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis	pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis	RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata	RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora	Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa	Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha	Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana	Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	149
AclWI	GGATC	3 cut(s)	282, 431, 803
AcuI	CTGAAG	1 cut(s)	401
AfaI	GTAC	2 cut(s)	233, 320
AfiI	CCNNNNNNNGG	1 cut(s)	149
AgeI	ACCGGT	1 cut(s)	321
AgsI	TTSAA	6 cut(s)	176, 266, 512, 617, 670, 700
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	4 cut(s)	7, 139, 298, 676
AluI	AGCT	4 cut(s)	7, 139, 298, 676
Alw26I	GTCTC	4 cut(s)	173, 338, 567, 620
AlwI	GGATC	3 cut(s)	282, 431, 803
AlwNI	CAGNNNCTG	1 cut(s)	694
AoxI	GGCC	2 cut(s)	68, 620
ApeKI	GCWGC	2 cut(s)	673, 775
ArsI	GACNNNNNNTTYG	2 cut(s)	701, 733
AsiGI	ACCGGT	1 cut(s)	321
Asp700I	GAANNNNTTC	2 cut(s)	261, 560
AspS9I	GGNCC	2 cut(s)	107, 685
AsuHPI	GGTGA	1 cut(s)	361
AsuNHI	GCTAGC	1 cut(s)	7
AvaII	GGWCC	2 cut(s)	107, 685
BauI	CACGAG	1 cut(s)	525
BbvI	GCAGC	2 cut(s)	685, 762
BccI	CCATC	3 cut(s)	346, 755, 777
BceAI	ACGGC	3 cut(s)	208, 359, 819
BciT130I	CCWGG	1 cut(s)	150
BclI	TGATCA	1 cut(s)	387
BcoDI	GTCTC	4 cut(s)	173, 338, 567, 620
BfaI	CTAG	3 cut(s)	8, 194, 829
BfmI	CTRYAG	1 cut(s)	162
BisI	GCNGC	2 cut(s)	674, 776
BlsI	GCNGC	2 cut(s)	675, 777
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	2 cut(s)	107, 685
BmgT120I	GGNCC	2 cut(s)	107, 685
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	2 cut(s)	361, 762
BmtI	GCTAGC	1 cut(s)	11
BplI	GAGNNNNNCTC	2 cut(s)	462, 494
BsaJI	CCNNGG	1 cut(s)	565
BsaWI	WCCGGW	1 cut(s)	321
Bsc4I	CCNNNNNNNGG	1 cut(s)	149
Bse118I	RCCGGY	1 cut(s)	321
Bse1I	ACTGG	1 cut(s)	187
Bse3DI	GCAATG	2 cut(s)	240, 501
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	565
BseGI	GGATG	3 cut(s)	549, 777, 788
BseLI	CCNNNNNNNGG	1 cut(s)	149
BseMI	GCAATG	2 cut(s)	240, 501
BseMII	CTCAG	1 cut(s)	615
BseNI	ACTGG	1 cut(s)	187
BseXI	GCAGC	2 cut(s)	685, 762
BshFI	GGCC	2 cut(s)	70, 622
BshTI	ACCGGT	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	322
BslFI	GGGAC	1 cut(s)	448
BslI	CCNNNNNNNGG	1 cut(s)	149
BsmAI	GTCTC	4 cut(s)	173, 338, 567, 620
BsmBI	CGTCTC	1 cut(s)	338
BsmFI	GGGAC	1 cut(s)	448
BsnI	GGCC	2 cut(s)	70, 622
Bsp143I	GATC	5 cut(s)	274, 387, 423, 645, 795
Bsp19I	CCATGG	1 cut(s)	565
BspANI	GGCC	2 cut(s)	70, 622
BspCNI	CTCAG	1 cut(s)	616
BspOI	GCTAGC	1 cut(s)	11
BspPI	GGATC	3 cut(s)	282, 431, 803
BsrDI	GCAATG	2 cut(s)	240, 501
BsrFI	RCCGGY	1 cut(s)	321
BsrI	ACTGG	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	321
BssECI	CCNNGG	1 cut(s)	565
BssMI	GATC	5 cut(s)	274, 387, 423, 645, 795
BssSI	CACGAG	1 cut(s)	525
BssT1I	CCWWGG	1 cut(s)	565
Bst2BI	CACGAG	1 cut(s)	525
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	3 cut(s)	349, 465, 696
Bst6I	CTCTTC	2 cut(s)	171, 525
BstAPI	GCANNNNNTGC	1 cut(s)	772
BstC8I	GCNNGC	3 cut(s)	9, 595, 664
BstDEI	CTNAG	2 cut(s)	114, 624
BstDSI	CCRYGG	1 cut(s)	565
BstF5I	GGATG	3 cut(s)	549, 777, 788
BstKTI	GATC	5 cut(s)	277, 390, 426, 648, 798
BstMAI	GTCTC	4 cut(s)	173, 338, 567, 620
BstMBI	GATC	5 cut(s)	274, 387, 423, 645, 795
BstMWI	GCNNNNNNNGC	1 cut(s)	772
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	597
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	1 cut(s)	162
BstV1I	GCAGC	2 cut(s)	685, 762
BstX2I	RGATCY	1 cut(s)	274
BstYI	RGATCY	1 cut(s)	274
BsuRI	GGCC	2 cut(s)	70, 622
BtgI	CCRYGG	1 cut(s)	565
BtgZI	GCGATG	1 cut(s)	173
BtsCI	GGATG	3 cut(s)	549, 777, 788
BtsIMutI	CAGTG	1 cut(s)	223
Cac8I	GCNNGC	3 cut(s)	9, 595, 664
CaiI	CAGNNNCTG	1 cut(s)	694
Cfr10I	RCCGGY	1 cut(s)	321
Cfr13I	GGNCC	2 cut(s)	107, 685
CsiI	ACCWGGT	1 cut(s)	148
Csp6I	GTAC	2 cut(s)	232, 319
CspAI	ACCGGT	1 cut(s)	321
CspCI	CAANNNNNGTGG	2 cut(s)	99, 134
CviAII	CATG	5 cut(s)	338, 419, 566, 594, 779
CviJI	RGCY	9 cut(s)	7, 70, 139, 298, 622, 662, 666, 676, 806
CviKI_1	RGCY	9 cut(s)	7, 70, 139, 298, 622, 662, 666, 676, 806
CviQI	GTAC	2 cut(s)	232, 319
DdeI	CTNAG	2 cut(s)	114, 624
DpnI	GATC	5 cut(s)	276, 389, 425, 647, 797
DpnII	GATC	5 cut(s)	274, 387, 423, 645, 795
Eam1104I	CTCTTC	2 cut(s)	171, 525
EarI	CTCTTC	2 cut(s)	171, 525
Eco130I	CCWWGG	1 cut(s)	565
Eco147I	AGGCCT	1 cut(s)	622
Eco47I	GGWCC	2 cut(s)	107, 685
Eco57I	CTGAAG	1 cut(s)	401
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	1 cut(s)	565
ErhI	CCWWGG	1 cut(s)	565
Esp3I	CGTCTC	1 cut(s)	338
FaeI	CATG	5 cut(s)	341, 422, 569, 597, 782
FaqI	GGGAC	1 cut(s)	448
FatI	CATG	5 cut(s)	337, 418, 565, 593, 778
FbaI	TGATCA	1 cut(s)	387
Fnu4HI	GCNGC	2 cut(s)	674, 776
FokI	GGATG	3 cut(s)	556, 784, 795
Fsp4HI	GCNGC	2 cut(s)	674, 776
FspBI	CTAG	3 cut(s)	8, 194, 829
GluI	GCNGC	2 cut(s)	674, 776
HaeIII	GGCC	2 cut(s)	70, 622
HapII	CCGG	1 cut(s)	322
Hin1II	CATG	5 cut(s)	341, 422, 569, 597, 782
HpaII	CCGG	1 cut(s)	322
HphI	GGTGA	1 cut(s)	361
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	3 cut(s)	366, 470, 543
Hpy188III	TCNNGA	4 cut(s)	379, 391, 527, 649
Hpy8I	GTNNAC	1 cut(s)	31
Hpy99I	CGWCG	1 cut(s)	543
HpyAV	CCTTC	2 cut(s)	460, 786
HpyCH4III	ACNGT	3 cut(s)	349, 465, 696
HpyCH4IV	ACGT	1 cut(s)	538
HpyCH4V	TGCA	5 cut(s)	121, 209, 484, 494, 778
HpyF10VI	GCNNNNNNNGC	1 cut(s)	772
HpyF3I	CTNAG	2 cut(s)	114, 624
HpySE526I	ACGT	1 cut(s)	538
Hsp92II	CATG	5 cut(s)	341, 422, 569, 597, 782
Ksp22I	TGATCA	1 cut(s)	387
Kzo9I	GATC	5 cut(s)	274, 387, 423, 645, 795
LmnI	GCTCC	1 cut(s)	681
Lsp1109I	GCAGC	2 cut(s)	685, 762
LweI	GCATC	2 cut(s)	361, 762
MabI	ACCWGGT	1 cut(s)	148
MaeI	CTAG	3 cut(s)	8, 194, 829
MaeII	ACGT	1 cut(s)	538
MalI	GATC	5 cut(s)	276, 389, 425, 647, 797
MboI	GATC	5 cut(s)	274, 387, 423, 645, 795
MboII	GAAGA	5 cut(s)	188, 542, 712, 721, 770
MfeI	CAATTG	1 cut(s)	132
MflI	RGATCY	1 cut(s)	274
MluCI	AATT	3 cut(s)	132, 310, 713
MmeI	TCCRAC	3 cut(s)	106, 521, 531
MnlI	CCTC	5 cut(s)	265, 466, 526, 534, 592
MroXI	GAANNNNTTC	2 cut(s)	261, 560
MseI	TTAA	4 cut(s)	279, 309, 326, 725
MslI	CAYNNNNRTG	2 cut(s)	336, 489
MspI	CCGG	1 cut(s)	322
MspR9I	CCNGG	1 cut(s)	150
MunI	CAATTG	1 cut(s)	132
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	1 cut(s)	772
NcoI	CCATGG	1 cut(s)	565
NdeII	GATC	5 cut(s)	274, 387, 423, 645, 795
NheI	GCTAGC	1 cut(s)	7
NlaIII	CATG	5 cut(s)	341, 422, 569, 597, 782
NspI	RCATGY	1 cut(s)	597
PaeI	GCATGC	1 cut(s)	597
PceI	AGGCCT	1 cut(s)	622
PcsI	WCGNNNNNNNCGW	1 cut(s)	594
PdmI	GAANNNNTTC	2 cut(s)	261, 560
PflMI	CCANNNNNTGG	1 cut(s)	149
PinAI	ACCGGT	1 cut(s)	321
PkrI	GCNGC	2 cut(s)	675, 777
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspPI	GGNCC	2 cut(s)	107, 685
PstNI	CAGNNNCTG	1 cut(s)	694
PsuI	RGATCY	1 cut(s)	274
RsaI	GTAC	2 cut(s)	233, 320
RsaNI	GTAC	2 cut(s)	232, 319
RseI	CAYNNNNRTG	2 cut(s)	336, 489
SaqAI	TTAA	4 cut(s)	279, 309, 326, 725
SatI	GCNGC	2 cut(s)	674, 776
Sau3AI	GATC	5 cut(s)	274, 387, 423, 645, 795
Sau96I	GGNCC	2 cut(s)	107, 685
ScrFI	CCNGG	1 cut(s)	150
SexAI	ACCWGGT	1 cut(s)	148
SfaNI	GCATC	2 cut(s)	361, 762
SfcI	CTRYAG	1 cut(s)	162
SinI	GGWCC	2 cut(s)	107, 685
SmiMI	CAYNNNNRTG	2 cut(s)	336, 489
SphI	GCATGC	1 cut(s)	597
Sse9I	AATT	3 cut(s)	132, 310, 713
SseBI	AGGCCT	1 cut(s)	622
SspMI	CTAG	3 cut(s)	8, 194, 829
StuI	AGGCCT	1 cut(s)	622
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	1 cut(s)	565
TaaI	ACNGT	3 cut(s)	349, 465, 696
TaiI	ACGT	1 cut(s)	541
TaqI	TCGA	2 cut(s)	157, 719
TasI	AATT	3 cut(s)	132, 310, 713
TatI	WGTACW	1 cut(s)	231
Tru1I	TTAA	4 cut(s)	279, 309, 326, 725
Tru9I	TTAA	4 cut(s)	279, 309, 326, 725
TscAI	CASTG	1 cut(s)	223
TseI	GCWGC	2 cut(s)	673, 775
TspDTI	ATGAA	7 cut(s)	17, 33, 403, 407, 596, 771, 801
TspGWI	ACGGA	1 cut(s)	120
TspRI	CASTG	1 cut(s)	223
Van91I	CCANNNNNTGG	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	107, 685
XceI	RCATGY	1 cut(s)	597
XmnI	GAANNNNTTC	2 cut(s)	261, 560
XspI	CTAG	3 cut(s)	8, 194, 829

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.