MD11G1098900.v1.1

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000175
Physical Location & Seq
Reverse (-)
8237235 .. 8238357
1123 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1098900.v1.1.491

Sequence Viewer

Length: 426 bp
ATGAAACCAGATAATTTTTTGTCCACTTATTACAATGGTCCTACAATGCCCCTTTCTTGTGCACTCGATGGGAGGCTCTCTCCACTACTTTCCTTGTATGATGCATTGATATTAATATACCCCCGTGACAATGAAGAGAGGTTGAGGTTTGAGAGTGAGTTCTATGGCAGGGAAGCTATGAATGTAATAGCATGTGAGGGCGTAGAGAGGGTTGAGAGGCCTGAGACATATAAGCAGTGGCAGGTTCGATGCATGAGGGCTGGTTTACAGCCGTTGCAATTGGACCAAGATTTAGTGAAGATTCTTAAGGATAAGGTGAAGGCATGGTACCACAAAGATTTTGTAGTTGATCAAGATAGTGATTGGATGCTTCAAGGATGGAAGGGCCGAATTGTGTATGCTTCTTCTTGTTGGGTGCCAGCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

142

Amino Acids

16.53

Weight (kDa)

5.45

Isoelectric Point (pI)

58.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 31 - 138 8.9e-26 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 232
Acc65I GGTACC 1 cut(s) 327
AccB1I GGYRCC 2 cut(s) 327, 415
AfaI GTAC 1 cut(s) 329
AflII CTTAAG 1 cut(s) 305
AgsI TTSAA 1 cut(s) 374
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw21I GWGCWC 1 cut(s) 64
Alw26I GTCTC 1 cut(s) 218
Alw44I GTGCAC 1 cut(s) 60
AoxI GGCC 2 cut(s) 218, 385
ApaLI GTGCAC 1 cut(s) 60
AseI ATTAAT 1 cut(s) 113
Asp718I GGTACC 1 cut(s) 327
AspS9I GGNCC 3 cut(s) 38, 283, 385
AsuHPI GGTGA 1 cut(s) 328
AvaII GGWCC 2 cut(s) 38, 283
BaeGI GKGCMC 1 cut(s) 64
BanI GGYRCC 2 cut(s) 327, 415
BarI GAAGNNNNNNTAC 2 cut(s) 311, 343
Bbv12I GWGCWC 1 cut(s) 64
BccI CCATC 2 cut(s) 62, 372
BceAI ACGGC 1 cut(s) 256
BclI TGATCA 1 cut(s) 349
BcoDI GTCTC 1 cut(s) 218
BfrI CTTAAG 1 cut(s) 305
BfuAI ACCTGC 1 cut(s) 232
Bme18I GGWCC 2 cut(s) 38, 283
BmgT120I GGNCC 3 cut(s) 38, 283, 385
BmiI GGNNCC 2 cut(s) 329, 417
BmsI GCATC 3 cut(s) 91, 239, 357
BplI GAGNNNNNCTC 2 cut(s) 64, 96
BseGI GGATG 2 cut(s) 372, 383
BseMII CTCAG 1 cut(s) 213
BseSI GKGCMC 1 cut(s) 64
BshFI GGCC 2 cut(s) 220, 387
BshNI GGYRCC 2 cut(s) 327, 415
BsiHKAI GWGCWC 1 cut(s) 64
BsmAI GTCTC 1 cut(s) 218
BsnI GGCC 2 cut(s) 220, 387
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 1 cut(s) 349
BspANI GGCC 2 cut(s) 220, 387
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 2 cut(s) 329, 417
BspMI ACCTGC 1 cut(s) 232
BspT107I GGYRCC 2 cut(s) 327, 415
BspTI CTTAAG 1 cut(s) 305
BssMI GATC 1 cut(s) 349
Bst6I CTCTTC 1 cut(s) 129
BstAFI CTTAAG 1 cut(s) 305
BstC8I GCNNGC 1 cut(s) 420
BstDEI CTNAG 1 cut(s) 222
BstF5I GGATG 2 cut(s) 372, 383
BstKTI GATC 1 cut(s) 352
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 1 cut(s) 349
BstNSI RCATGY 1 cut(s) 195
BstSLI GKGCMC 1 cut(s) 64
BsuRI GGCC 2 cut(s) 220, 387
BtsCI GGATG 2 cut(s) 372, 383
BtsI GCAGTG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 242
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 1 cut(s) 420
Cfr13I GGNCC 3 cut(s) 38, 283, 385
Csp6I GTAC 1 cut(s) 328
CviAII CATG 3 cut(s) 192, 253, 324
CviJI RGCY 6 cut(s) 76, 176, 220, 260, 271, 387
CviKI_1 RGCY 6 cut(s) 76, 176, 220, 260, 271, 387
CviQI GTAC 1 cut(s) 328
DdeI CTNAG 1 cut(s) 222
DpnI GATC 1 cut(s) 351
DpnII GATC 1 cut(s) 349
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
Eco147I AGGCCT 1 cut(s) 220
Eco47I GGWCC 2 cut(s) 38, 283
EcoT22I ATGCAT 2 cut(s) 106, 254
FaeI CATG 3 cut(s) 195, 256, 327
FatI CATG 3 cut(s) 191, 252, 323
FbaI TGATCA 1 cut(s) 349
FokI GGATG 2 cut(s) 379, 390
HaeIII GGCC 2 cut(s) 220, 387
Hin1II CATG 3 cut(s) 195, 256, 327
HinfI GANTC 1 cut(s) 301
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 3 cut(s) 24, 62, 266
Hpy188III TCNNGA 1 cut(s) 353
Hpy8I GTNNAC 3 cut(s) 24, 62, 266
HpyAV CCTTC 2 cut(s) 313, 376
HpyCH4V TGCA 4 cut(s) 62, 104, 252, 277
HpyF3I CTNAG 1 cut(s) 222
Hsp92II CATG 3 cut(s) 195, 256, 327
KpnI GGTACC 1 cut(s) 331
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 1 cut(s) 349
LpnPI CCDG 5 cut(s) 21, 154, 227, 234, 246
LweI GCATC 3 cut(s) 91, 239, 357
MaeIII GTNAC 1 cut(s) 125
MalI GATC 1 cut(s) 351
MboI GATC 1 cut(s) 349
MboII GAAGA 3 cut(s) 146, 310, 396
MfeI CAATTG 1 cut(s) 278
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 3 cut(s) 13, 278, 390
MnlI CCTC 7 cut(s) 66, 132, 138, 190, 201, 210, 249
Mph1103I ATGCAT 2 cut(s) 106, 254
MseI TTAA 2 cut(s) 113, 306
MspCI CTTAAG 1 cut(s) 305
MunI CAATTG 1 cut(s) 278
NdeII GATC 1 cut(s) 349
NlaIII CATG 3 cut(s) 195, 256, 327
NlaIV GGNNCC 2 cut(s) 329, 417
NmuCI GTSAC 1 cut(s) 125
NsiI ATGCAT 2 cut(s) 106, 254
NspI RCATGY 1 cut(s) 195
PceI AGGCCT 1 cut(s) 220
PfeI GAWTC 1 cut(s) 301
PshBI ATTAAT 1 cut(s) 113
PspN4I GGNNCC 2 cut(s) 329, 417
PspPI GGNCC 3 cut(s) 38, 283, 385
RsaI GTAC 1 cut(s) 329
RsaNI GTAC 1 cut(s) 328
SaqAI TTAA 2 cut(s) 113, 306
Sau3AI GATC 1 cut(s) 349
Sau96I GGNCC 3 cut(s) 38, 283, 385
SduI GDGCHC 1 cut(s) 64
SetI ASST 5 cut(s) 143, 149, 178, 246, 318
SfaNI GCATC 3 cut(s) 91, 239, 357
SinI GGWCC 2 cut(s) 38, 283
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 3 cut(s) 13, 278, 390
SseBI AGGCCT 1 cut(s) 220
StuI AGGCCT 1 cut(s) 220
TaqI TCGA 2 cut(s) 66, 247
TasI AATT 3 cut(s) 13, 278, 390
TfiI GAWTC 1 cut(s) 301
Tru1I TTAA 2 cut(s) 113, 306
Tru9I TTAA 2 cut(s) 113, 306
TscAI CASTG 1 cut(s) 242
TseFI GTSAC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 3 cut(s) 17, 147, 194
TspRI CASTG 1 cut(s) 242
Vha464I CTTAAG 1 cut(s) 305
VneI GTGCAC 1 cut(s) 60
VpaK11BI GGWCC 2 cut(s) 38, 283
VspI ATTAAT 1 cut(s) 113
XceI RCATGY 1 cut(s) 195
Zsp2I ATGCAT 2 cut(s) 106, 254
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.