Rh5AG431200

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
74124317 .. 74125031
715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG431200.1

Sequence Viewer

Length: 240 bp
ATGTTTGAAGCGACTGTTCCTCGTGAAGATGAACGGCGGATGATTATCGAGAGAGAAAAATGTGGTAGAGACATAATGAATATCGTAGCATGCGAGGGAGTGGAAAGGTTTGAAAGACCTGAGACATATAAGAAATGGCAGATCAGGAATGTGAGGGCTGGGTTGAAGCAGCTCCCGTTGGACCAGGAGGAGTTGAAGAAAGTGAAGAACTTGAACAGAATTGGCTGTGCTGTCTTATAA

Protein Analysis

79

Amino Acids

9.39

Weight (kDa)

8.93

Isoelectric Point (pI)

51.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 2 - 71 1.7e-16 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 238
AciI CCGC 1 cut(s) 37
AgsI TTSAA 5 cut(s) 8, 113, 166, 196, 214
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 1 cut(s) 172
AluI AGCT 1 cut(s) 172
Alw26I GTCTC 2 cut(s) 63, 116
ApeKI GCWGC 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 181
AvaII GGWCC 1 cut(s) 181
BauI CACGAG 1 cut(s) 21
BbvI GCAGC 1 cut(s) 181
BceAI ACGGC 1 cut(s) 50
BciT130I CCWGG 1 cut(s) 185
BcoDI GTCTC 2 cut(s) 63, 116
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
Bme1390I CCNGG 1 cut(s) 185
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 185
BsaBI GATNNNNATC 1 cut(s) 44
Bse8I GATNNNNATC 1 cut(s) 44
BseBI CCWGG 1 cut(s) 185
BseGI GGATG 1 cut(s) 45
BseJI GATNNNNATC 1 cut(s) 44
BseMII CTCAG 1 cut(s) 111
BseRI GAGGAG 1 cut(s) 203
BseXI GCAGC 1 cut(s) 181
BseYI CCCAGC 1 cut(s) 158
BsmAI GTCTC 2 cut(s) 63, 116
Bsp143I GATC 1 cut(s) 141
BspACI CCGC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 112
BssMI GATC 1 cut(s) 141
BssSI CACGAG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 185
Bst4CI ACNGT 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 91
BstDEI CTNAG 1 cut(s) 120
BstF5I GGATG 1 cut(s) 45
BstKTI GATC 1 cut(s) 144
BstMAI GTCTC 2 cut(s) 63, 116
BstMBI GATC 1 cut(s) 141
BstNI CCWGG 1 cut(s) 185
BstNSI RCATGY 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 183
BstV1I GCAGC 1 cut(s) 181
BtsCI GGATG 1 cut(s) 45
Cac8I GCNNGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 181
CviAII CATG 1 cut(s) 90
CviJI RGCY 3 cut(s) 158, 172, 225
CviKI_1 RGCY 3 cut(s) 158, 172, 225
DdeI CTNAG 1 cut(s) 120
DpnI GATC 1 cut(s) 143
DpnII GATC 1 cut(s) 141
EciI GGCGGA 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 181
EcoRII CCWGG 1 cut(s) 183
FaeI CATG 1 cut(s) 93
FaiI YATR 5 cut(s) 74, 91, 127, 129, 238
FatI CATG 1 cut(s) 89
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 1 cut(s) 52
Fsp4HI GCNGC 1 cut(s) 170
GluI GCNGC 1 cut(s) 170
GsaI CCCAGC 1 cut(s) 162
Hin1II CATG 1 cut(s) 93
Hpy188III TCNNGA 3 cut(s) 23, 49, 145
HpyCH4III ACNGT 1 cut(s) 16
HpyF3I CTNAG 1 cut(s) 120
Hsp92II CATG 1 cut(s) 93
Kzo9I GATC 1 cut(s) 141
LmnI GCTCC 1 cut(s) 177
LpnPI CCDG 5 cut(s) 130, 132, 144, 170, 197
Lsp1109I GCAGC 1 cut(s) 181
MalI GATC 1 cut(s) 143
MboI GATC 1 cut(s) 141
MboII GAAGA 3 cut(s) 38, 208, 217
MluCI AATT 1 cut(s) 219
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 4 cut(s) 30, 88, 147, 181
MspR9I CCNGG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 185
NdeII GATC 1 cut(s) 141
NlaIII CATG 1 cut(s) 93
NspI RCATGY 1 cut(s) 93
PaeI GCATGC 1 cut(s) 93
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PkrI GCNGC 1 cut(s) 171
PsiI TTATAA 1 cut(s) 238
Psp6I CCWGG 1 cut(s) 183
PspFI CCCAGC 1 cut(s) 158
PspGI CCWGG 1 cut(s) 183
PspPI GGNCC 1 cut(s) 181
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 185
SetI ASST 3 cut(s) 110, 121, 174
SinI GGWCC 1 cut(s) 181
SphI GCATGC 1 cut(s) 93
Sse9I AATT 1 cut(s) 219
SsiI CCGC 1 cut(s) 37
StyD4I CCNGG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 16
TaqI TCGA 1 cut(s) 48
TasI AATT 1 cut(s) 219
TseI GCWGC 1 cut(s) 169
TspDTI ATGAA 2 cut(s) 45, 92
VpaK11BI GGWCC 1 cut(s) 181
XceI RCATGY 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.