RchiOBHm_Chr5g0065731

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000175
Physical Location & Seq
Reverse (-)
71690724 .. 71691862
1139 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ34159

Sequence Viewer

Length: 657 bp
ATGCTTATGGAGGAAGAGCTGGAGAACAGACCCTGCATGCTTCAGGACTGTTTGGCCCTCCAAGCTGCTGAGAAATCCTTGGAAGATGTCCTGGTTCAGCAATATCCTCCTTCGACTAATCCCGTTCTTGCTTCTTCCATTCAGCAAAATGTTGAGAACTCTGATGATTTCATTAACCACAGCAGTAATAGCTCCACTGCTACTAGAAACTGGGATGATGGTTCAGGTTGGATTTCCTTTCAAAATGATCACAATGACTCAACAAAAGGATCAAGGAGCAAAAAAGATCGTCATTGGGAGGATGGCGATTGTCTAGAAGAAGGGAGGAGCAATAAGCAGTCATCATTTTACGCTGATGAATCCGAGCCACCAGATATGTTGGATAAGGTACTGCTCTTTCATTATCAAAACCCAAAGTCTGATTCATGTTCTTTTTTTCAGCTTAAAGGGGGAAGGGGACATGCAGGATCCAAAGGCAAAAGAACAGTTAAGAAAAAAAAGGATGACAACACTGAAGTAGTGGATTTTCAGTCACTGCTAACTCAGTGTGCAAAGGCTGTTGCAAGCTATGACAGAAGGACTGCAAATGAACAACTGAAACAGATAAGGCAGCACTCATCTCCCTACGCCCCTACGGTGATGGAACCCAAAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

218

Amino Acids

24.64

Weight (kDa)

5.32

Isoelectric Point (pI)

63.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 277, 462, 475
AcuI CTGAAG 2 cut(s) 26, 534
AfaI GTAC 1 cut(s) 390
AgsI TTSAA 1 cut(s) 242
AjnI CCWGG 1 cut(s) 90
AjuI GAANNNNNNNTTGG 2 cut(s) 406, 438
AluBI AGCT 5 cut(s) 19, 65, 192, 442, 567
AluI AGCT 5 cut(s) 19, 65, 192, 442, 567
AlwI GGATC 3 cut(s) 277, 462, 475
AlwNI CAGNNNCTG 2 cut(s) 33, 535
AoxI GGCC 1 cut(s) 54
ApeKI GCWGC 2 cut(s) 65, 610
AspS9I GGNCC 1 cut(s) 55
AsuHPI GGTGA 1 cut(s) 649
BamHI GGATCC 1 cut(s) 467
BbvI GCAGC 2 cut(s) 52, 622
BccI CCATC 3 cut(s) 212, 296, 634
BciT130I CCWGG 1 cut(s) 92
BclI TGATCA 1 cut(s) 247
BfaI CTAG 2 cut(s) 204, 314
BisI GCNGC 2 cut(s) 66, 611
BlsI GCNGC 2 cut(s) 67, 612
Bme1390I CCNGG 1 cut(s) 92
BmgT120I GGNCC 1 cut(s) 55
BmiI GGNNCC 2 cut(s) 469, 645
BmrFI CCNGG 1 cut(s) 92
BmrI ACTGGG 1 cut(s) 220
BmuI ACTGGG 1 cut(s) 220
BpmI CTGGAG 1 cut(s) 41
BsaJI CCNNGG 1 cut(s) 78
Bse1I ACTGG 1 cut(s) 215
BseBI CCWGG 1 cut(s) 92
BseDI CCNNGG 1 cut(s) 78
BseGI GGATG 3 cut(s) 220, 307, 508
BseMII CTCAG 2 cut(s) 60, 557
BseNI ACTGG 1 cut(s) 215
BseRI GAGGAG 1 cut(s) 340
BseXI GCAGC 2 cut(s) 52, 622
BshFI GGCC 1 cut(s) 56
BslFI GGGAC 1 cut(s) 471
BsmFI GGGAC 1 cut(s) 471
BsnI GGCC 1 cut(s) 56
Bsp143I GATC 4 cut(s) 247, 269, 286, 467
BspANI GGCC 1 cut(s) 56
BspCNI CTCAG 2 cut(s) 61, 556
BspLI GGNNCC 2 cut(s) 469, 645
BspPI GGATC 3 cut(s) 277, 462, 475
BspQI GCTCTTC 1 cut(s) 9
BsrI ACTGG 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 4 cut(s) 247, 269, 286, 467
BssT1I CCWWGG 1 cut(s) 78
Bst2UI CCWGG 1 cut(s) 92
Bst4CI ACNGT 3 cut(s) 50, 487, 637
Bst6I CTCTTC 1 cut(s) 9
BstC8I GCNNGC 2 cut(s) 38, 565
BstDEI CTNAG 2 cut(s) 69, 543
BstF5I GGATG 3 cut(s) 220, 307, 508
BstKTI GATC 4 cut(s) 250, 272, 289, 470
BstMBI GATC 4 cut(s) 247, 269, 286, 467
BstMWI GCNNNNNNNGC 2 cut(s) 62, 189
BstNI CCWGG 1 cut(s) 92
BstNSI RCATGY 2 cut(s) 40, 464
BstSCI CCNGG 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 52, 622
BstX2I RGATCY 1 cut(s) 467
BstYI RGATCY 1 cut(s) 467
BsuRI GGCC 1 cut(s) 56
BtsCI GGATG 3 cut(s) 220, 307, 508
BtsI GCAGTG 2 cut(s) 195, 533
BtsIMutI CAGTG 4 cut(s) 195, 510, 533, 551
Cac8I GCNNGC 2 cut(s) 38, 565
CaiI CAGNNNCTG 2 cut(s) 33, 535
Cfr13I GGNCC 1 cut(s) 55
Csp6I GTAC 1 cut(s) 389
CviAII CATG 3 cut(s) 37, 426, 461
CviJI RGCY 8 cut(s) 19, 56, 65, 192, 367, 442, 557, 567
CviKI_1 RGCY 8 cut(s) 19, 56, 65, 192, 367, 442, 557, 567
CviQI GTAC 1 cut(s) 389
DdeI CTNAG 2 cut(s) 69, 543
DpnI GATC 4 cut(s) 249, 271, 288, 469
DpnII GATC 4 cut(s) 247, 269, 286, 467
Eam1104I CTCTTC 1 cut(s) 9
EarI CTCTTC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 78
Eco57I CTGAAG 2 cut(s) 26, 534
EcoRII CCWGG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 3 cut(s) 40, 429, 464
FaiI YATR 6 cut(s) 8, 38, 377, 427, 462, 570
FaqI GGGAC 1 cut(s) 471
FatI CATG 3 cut(s) 36, 425, 460
FbaI TGATCA 1 cut(s) 247
Fnu4HI GCNGC 2 cut(s) 66, 611
FokI GGATG 3 cut(s) 227, 314, 515
Fsp4HI GCNGC 2 cut(s) 66, 611
FspBI CTAG 2 cut(s) 204, 314
GluI GCNGC 2 cut(s) 66, 611
GsuI CTGGAG 1 cut(s) 41
HaeIII GGCC 1 cut(s) 56
Hin1II CATG 3 cut(s) 40, 429, 464
HinfI GANTC 3 cut(s) 257, 359, 422
HphI GGTGA 1 cut(s) 649
Hpy188I TCNGA 3 cut(s) 163, 364, 421
Hpy188III TCNNGA 2 cut(s) 44, 314
HpyAV CCTTC 4 cut(s) 120, 314, 447, 570
HpyCH4III ACNGT 3 cut(s) 50, 487, 637
HpyCH4V TGCA 5 cut(s) 36, 464, 551, 563, 584
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 189
HpyF3I CTNAG 2 cut(s) 69, 543
Hsp92II CATG 3 cut(s) 40, 429, 464
Ksp22I TGATCA 1 cut(s) 247
Kzo9I GATC 4 cut(s) 247, 269, 286, 467
LguI GCTCTTC 1 cut(s) 9
LmnI GCTCC 3 cut(s) 197, 276, 327
LpnPI CCDG 9 cut(s) 5, 29, 46, 77, 104, 196, 210, 384, 450
Lsp1109I GCAGC 2 cut(s) 52, 622
MaeI CTAG 2 cut(s) 204, 314
MaeIII GTNAC 1 cut(s) 531
MalI GATC 4 cut(s) 249, 271, 288, 469
MboI GATC 4 cut(s) 247, 269, 286, 467
MboII GAAGA 4 cut(s) 26, 95, 126, 329
MflI RGATCY 1 cut(s) 467
MlyI GAGTC 1 cut(s) 251
MmeI TCCRAC 2 cut(s) 209, 360
MnlI CCTC 5 cut(s) 4, 68, 117, 292, 318
MseI TTAA 3 cut(s) 174, 444, 489
MspR9I CCNGG 1 cut(s) 92
MvaI CCWGG 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 62, 189
NdeII GATC 4 cut(s) 247, 269, 286, 467
NlaIII CATG 3 cut(s) 40, 429, 464
NlaIV GGNNCC 2 cut(s) 469, 645
NmuCI GTSAC 1 cut(s) 531
NspI RCATGY 2 cut(s) 40, 464
PaeI GCATGC 1 cut(s) 40
PciSI GCTCTTC 1 cut(s) 9
PfeI GAWTC 2 cut(s) 359, 422
PkrI GCNGC 2 cut(s) 67, 612
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 90
PspGI CCWGG 1 cut(s) 90
PspN4I GGNNCC 2 cut(s) 469, 645
PspPI GGNCC 1 cut(s) 55
PstNI CAGNNNCTG 2 cut(s) 33, 535
PsuI RGATCY 1 cut(s) 467
RsaI GTAC 1 cut(s) 390
RsaNI GTAC 1 cut(s) 389
SapI GCTCTTC 1 cut(s) 9
SaqAI TTAA 3 cut(s) 174, 444, 489
SatI GCNGC 2 cut(s) 66, 611
Sau3AI GATC 4 cut(s) 247, 269, 286, 467
Sau96I GGNCC 1 cut(s) 55
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 92
SetI ASST 7 cut(s) 21, 67, 194, 229, 390, 444, 569
SphI GCATGC 1 cut(s) 40
SspMI CTAG 2 cut(s) 204, 314
StyD4I CCNGG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 78
TaaI ACNGT 3 cut(s) 50, 487, 637
TaqI TCGA 1 cut(s) 113
TfiI GAWTC 2 cut(s) 359, 422
Tru1I TTAA 3 cut(s) 174, 444, 489
Tru9I TTAA 3 cut(s) 174, 444, 489
TscAI CASTG 4 cut(s) 202, 517, 540, 551
TseFI GTSAC 1 cut(s) 531
TseI GCWGC 2 cut(s) 65, 610
Tsp45I GTSAC 1 cut(s) 531
TspDTI ATGAA 5 cut(s) 160, 372, 389, 414, 603
TspRI CASTG 4 cut(s) 202, 517, 540, 551
XbaI TCTAGA 1 cut(s) 313
XceI RCATGY 2 cut(s) 40, 464
XspI CTAG 2 cut(s) 204, 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.