Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0000175

Physical Location & Seq

Genomic Coordinates Reverse (-)

7346485 .. 7348548

Gene Structure 2064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1089300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2064 bp

ATGGATACCCTTCTTGAAAGATGTGATGTTTCCATGGAAAGATTCAATTTTGGGGTCTATGCTCATCAAAATCTTGTAAATGGATTCAAAATGGATCATGAGTCCACCTATTCAATTTTCCCTCCAACAAATGTGGACCATAATTCTAGTGATTCAAGTCCTCCTTTGAACACTGGTTCAGATGGAGATTCTATTGACCCTGGAGATTGCAGTCATCCTGTGCTTAAGTACATAAGCGATATTCTTCTGGAAGAAGATTTGGAGGGTAAGCCCTGCATGTTGCAGGACTGTTTGGCCCTCCAAGCTGCGGAAAAGTCTTTCTTTGATGTCCTTAATCCAAAGGGTCCTCCTTCGCCAAACCAACCCCCCTTGTCCCATAGCCTTGAGAATCCGGATGATGATTCCACCCCGGGTTTTCATAGCGGTAATGGCACCTCTATTGCTACCAAGACAGACTGGGGTTTTGATTCTTCAGAAACCTCCCATTTCCAATCTTATCTTGTTGAGTCTCAATCGGATAACCTTTTGGGTTCGGATCCTCTTTCTGAGATGCAAAGTTTTGGGCATTTTGGAGGTGTAGGGGAAGCATGTAAGTTCCTCCCAAATGAAAGTTTTGAAACTATTGACCTGGAGAATTCGCACACTGATCCGTGCCCTCTGGGAATTCGCACACTGATGAGGAGGCCGGAGAATGATGGGTACAACTCAACAAATATATTGAAGGGAAAAAAGAATCATCAAAGGGAGGATGGTGATTATCCAGAAGAAGGGAGGAGCAGCAAGCAGCCAGTTGCTTTTGCTGATGACTCGGAGCCGCAGGAAATGTTTGATGAAGTGTTACTCAGTCATGGGCGGCGTCATTTCGGTAACAAGCAGTCAAAAGGGTCCAAAACAACACGTTCAAAGAAACAGAGTAGCAACACAGAAATAGTAGATTTGAGCACATTGCTAACTCAATGTGCACAAGCCGTGGCAAGCTATGACCAACAAACTGCACGTGAACGACTCCAGAAGATAAGGCACTACTCTTCCCCCCGTGGTGATGCAAAGCAGAGATTAGCTCATTACTTTGCTGATGGCCTAGAGGCACGCTTGGATGGCGCCACAACCCCATCATACTCTTTTCTTGTTAGTACGCAGTCATCAGCTGCTGAAATATTAAAAGCTTTTCAGGTATCTGTTTCCTCATCCCCTTTCAAGCACACGTCAAGTTTCGTGGCCAACGGAACGATTATGAAACTCTCTGAAAACGCAACAAGGCTTCACATTATTGATTTTGGTATTGCTTATGGTTTCCAATGGCCTTGCTTTATCCAACATCTCTCGGAGAGACCTGGTGGGCCTCCTAAGCTTCGTATCACAGCAATTGAGCTTCCCCAACCAGGTTTTAGACCTACAGAAAGAGTTGAGGAGACTGCACGCCGTTTGAAAAAATATGCTGAGAGATTTAATGTTCCATTCGAGTGCAATGTCATTGCACAAAAATGGGAGACAATCAAGTTTGAGGATCTTAAAATTGACAGAAATGAGCCGACTGCCGTCAATTGTATGTTCCGTTTAAAGAATATACCTGATGAGACGGAGATGTTGAGCAGTGCCAGTCCAAGAGACATTGTGCTAAAGTTGATCAGGAAAATTAATCCAGACGTTTTCATTCATGGGATTGTCAATGGTACATACACTGCACCCTTCTTTGCCTCACGGTTCAGAGAGGCACTCTTCCACTACTCTGCATTGTTTGATATATTTGAGGCCACTGTTCCCCGCGAAGATGAAATGCGGCTGTTGTTTGAAAAAGCAGTTTATGGTAGAGACATAGTGAATGTCATAGCTTGTGAGGGACTGGAAAGAGTTGAAAGGCCTGAGACATACAAGCAGTGGCAGTTTCGGAATGTGAGGGCTGGGTTCAAGCAGCTTCCACTAGACCAAGAGCTTTTGAAGCAAGCGAGGAGATTGTCAAAGTGTTATCATGATGATTTTTGGATTGACGAAGATGGGAACTGGATGCTGCAGGGATGGAAAGGAAAAATTCTCTTGGCCATTTCAATTTGGGTACCGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

688

Amino Acids

77.57

Weight (kDa)

5.49

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	314 - 684	2.6e-114	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca	FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica	MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica	Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis	pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis	RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata	RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora	Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa	Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha	Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana	Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	2053
AccB1I	GGYRCC	3 cut(s)	431, 1100, 2053
AccII	CGCG	1 cut(s)	1767
AccIII	TCCGGA	1 cut(s)	391
AciI	CCGC	6 cut(s)	308, 423, 815, 853, 1765, 1780
AclWI	GGATC	5 cut(s)	102, 530, 543, 641, 1515
AcoI	YGGCCR	2 cut(s)	1218, 2037
AcsI	RAATTY	3 cut(s)	634, 663, 2028
AcuI	CTGAAG	1 cut(s)	456
AcvI	CACGTG	1 cut(s)	998
AcyI	GRCGYC	2 cut(s)	856, 1101
AfaI	GTAC	5 cut(s)	230, 701, 1135, 1675, 2055
AfiI	CCNNNNNNNGG	3 cut(s)	307, 767, 1382
AflII	CTTAAG	1 cut(s)	224
AflIII	ACRYGT	2 cut(s)	896, 1203
AjiI	CACGTC	1 cut(s)	1206
AjnI	CCWGG	4 cut(s)	199, 627, 1333, 1381
Alw21I	GWGCWC	2 cut(s)	944, 964
Alw26I	GTCTC	8 cut(s)	513, 1324, 1406, 1484, 1571, 1602, 1806, 1859
Alw44I	GTGCAC	1 cut(s)	960
AlwI	GGATC	5 cut(s)	102, 530, 543, 641, 1515
AlwNI	CAGNNNCTG	1 cut(s)	1151
Ama87I	CYCGRG	1 cut(s)	409
Aor13HI	TCCGGA	1 cut(s)	391
ApaLI	GTGCAC	1 cut(s)	960
ApeKI	GCWGC	6 cut(s)	305, 777, 784, 1148, 1912, 2008
ApoI	RAATTY	3 cut(s)	634, 663, 2028
ArsI	GACNNNNNNTTYG	2 cut(s)	446, 478
AseI	ATTAAT	1 cut(s)	1638
Asp718I	GGTACC	1 cut(s)	2053
AspLEI	GCGC	1 cut(s)	1103
AspS9I	GGNCC	5 cut(s)	136, 295, 344, 885, 1340
AsuC2I	CCSGG	2 cut(s)	410, 411
AsuHPI	GGTGA	2 cut(s)	764, 1052
AvaI	CYCGRG	1 cut(s)	409
AvaII	GGWCC	3 cut(s)	136, 344, 885
BaeGI	GKGCMC	2 cut(s)	656, 964
BalI	TGGCCA	2 cut(s)	1220, 2039
BamHI	GGATCC	1 cut(s)	535
BanI	GGYRCC	3 cut(s)	431, 1100, 2053
BbrPI	CACGTG	1 cut(s)	998
Bbv12I	GWGCWC	2 cut(s)	944, 964
BbvI	GCAGC	6 cut(s)	292, 789, 796, 1135, 1924, 1995
BccI	CCATC	8 cut(s)	176, 689, 743, 1070, 1091, 1120, 1988, 2010
BceAI	ACGGC	3 cut(s)	953, 1407, 1523
BciT130I	CCWGG	4 cut(s)	201, 629, 1335, 1383
BclI	TGATCA	1 cut(s)	1626
BcnI	CCSGG	2 cut(s)	410, 411
BcoDI	GTCTC	8 cut(s)	513, 1324, 1406, 1484, 1571, 1602, 1806, 1859
BfaI	CTAG	4 cut(s)	147, 1082, 1922, 2062
BfmI	CTRYAG	2 cut(s)	1395, 2009
BfoI	RGCGCY	1 cut(s)	1104
BfrI	CTTAAG	1 cut(s)	224
BisI	GCNGC	9 cut(s)	306, 778, 785, 815, 854, 1149, 1781, 1913, 2009
BlsI	GCNGC	9 cut(s)	307, 779, 786, 816, 855, 1150, 1782, 1914, 2010
Bme1390I	CCNGG	6 cut(s)	201, 410, 411, 629, 1335, 1383
Bme18I	GGWCC	3 cut(s)	136, 344, 885
BmeT110I	CYCGRG	1 cut(s)	409
BmgBI	CACGTC	1 cut(s)	1206
BmgT120I	GGNCC	5 cut(s)	136, 295, 344, 885, 1340
BmiI	GGNNCC	7 cut(s)	345, 433, 537, 813, 886, 1102, 2055
BmrFI	CCNGG	6 cut(s)	201, 410, 411, 629, 1335, 1383
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	3 cut(s)	540, 1033, 1995
BmuI	ACTGGG	1 cut(s)	466
BoxI	GACNNNNGTC	1 cut(s)	1538
BplI	GAGNNNNNCTC	4 cut(s)	1045, 1077, 1701, 1733
BpmI	CTGGAG	3 cut(s)	222, 650, 992
Bpu10I	CCTNAGC	1 cut(s)	1347
BpuEI	CTTGAG	1 cut(s)	404
BpuMI	CCSGG	2 cut(s)	410, 411
BsaAI	YACGTR	1 cut(s)	998
BsaHI	GRCGYC	2 cut(s)	856, 1101
BsaI	GGTCTC	1 cut(s)	1324
BsaJI	CCNNGG	6 cut(s)	33, 199, 408, 409, 969, 1036
BsaWI	WCCGGW	1 cut(s)	391
Bsc4I	CCNNNNNNNGG	3 cut(s)	307, 767, 1382
Bse118I	RCCGGY	1 cut(s)	2056
Bse1I	ACTGG	6 cut(s)	178, 461, 788, 1599, 1848, 2006
Bse3DI	GCAATG	3 cut(s)	944, 1473, 1474
BseAI	TCCGGA	1 cut(s)	391
BseBI	CCWGG	4 cut(s)	201, 629, 1335, 1383
BseDI	CCNNGG	6 cut(s)	33, 199, 408, 409, 969, 1036
BseGI	GGATG	7 cut(s)	214, 400, 754, 1102, 1187, 2010, 2021
BseLI	CCNNNNNNNGG	3 cut(s)	307, 767, 1382
BseMI	GCAATG	3 cut(s)	944, 1473, 1474
BseMII	CTCAG	4 cut(s)	537, 856, 1431, 1854
BseNI	ACTGG	6 cut(s)	178, 461, 788, 1599, 1848, 2006
BseRI	GAGGAG	4 cut(s)	694, 787, 1424, 1963
BseSI	GKGCMC	2 cut(s)	656, 964
BseXI	GCAGC	6 cut(s)	292, 789, 796, 1135, 1924, 1995
BseYI	CCCAGC	1 cut(s)	1901
BsgI	GTGCAG	3 cut(s)	978, 1401, 1668
Bsh1236I	CGCG	1 cut(s)	1767
BshNI	GGYRCC	3 cut(s)	431, 1100, 2053
BsiHKAI	GWGCWC	2 cut(s)	944, 964
BsiHKCI	CYCGRG	1 cut(s)	409
BsiSI	CCGG	4 cut(s)	392, 410, 686, 2057
BslFI	GGGAC	2 cut(s)	358, 1854
BslI	CCNNNNNNNGG	3 cut(s)	307, 767, 1382
BsmAI	GTCTC	8 cut(s)	513, 1324, 1406, 1484, 1571, 1602, 1806, 1859
BsmBI	CGTCTC	1 cut(s)	1571
BsmFI	GGGAC	2 cut(s)	358, 1854
Bso31I	GGTCTC	1 cut(s)	1324
BsoBI	CYCGRG	1 cut(s)	409
Bsp1286I	GDGCHC	3 cut(s)	656, 944, 964
Bsp13I	TCCGGA	1 cut(s)	391
Bsp143I	GATC	5 cut(s)	94, 535, 646, 1507, 1626
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	6 cut(s)	308, 423, 815, 853, 1765, 1780
BspCNI	CTCAG	4 cut(s)	538, 855, 1432, 1855
BspEI	TCCGGA	1 cut(s)	391
BspFNI	CGCG	1 cut(s)	1767
BspHI	TCATGA	2 cut(s)	97, 1969
BspLI	GGNNCC	7 cut(s)	345, 433, 537, 813, 886, 1102, 2055
BspMAI	CTGCAG	1 cut(s)	2013
BspPI	GGATC	5 cut(s)	102, 530, 543, 641, 1515
BspT107I	GGYRCC	3 cut(s)	431, 1100, 2053
BspTI	CTTAAG	1 cut(s)	224
BspTNI	GGTCTC	1 cut(s)	1324
BsrDI	GCAATG	3 cut(s)	944, 1473, 1474
BsrFI	RCCGGY	1 cut(s)	2056
BsrI	ACTGG	6 cut(s)	178, 461, 788, 1599, 1848, 2006
BssAI	RCCGGY	1 cut(s)	2056
BssECI	CCNNGG	6 cut(s)	33, 199, 408, 409, 969, 1036
BssMI	GATC	5 cut(s)	94, 535, 646, 1507, 1626
BssNI	GRCGYC	2 cut(s)	856, 1101
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	4 cut(s)	201, 629, 1335, 1383
Bst4CI	ACNGT	3 cut(s)	290, 1704, 1759
Bst6I	CTCTTC	2 cut(s)	1033, 1724
BstACI	GRCGYC	2 cut(s)	856, 1101
BstAFI	CTTAAG	1 cut(s)	224
BstBAI	YACGTR	1 cut(s)	998
BstC8I	GCNNGC	5 cut(s)	782, 976, 1090, 1420, 1944
BstDEI	CTNAG	5 cut(s)	546, 842, 1347, 1440, 1863
BstDSI	CCRYGG	3 cut(s)	33, 969, 1036
BstF5I	GGATG	7 cut(s)	214, 400, 754, 1102, 1187, 2010, 2021
BstFNI	CGCG	1 cut(s)	1767
BstH2I	RGCGCY	1 cut(s)	1104
BstHHI	GCGC	1 cut(s)	1103
BstKTI	GATC	5 cut(s)	97, 538, 649, 1510, 1629
BstMAI	GTCTC	8 cut(s)	513, 1324, 1406, 1484, 1571, 1602, 1806, 1859
BstMBI	GATC	5 cut(s)	94, 535, 646, 1507, 1626
BstMWI	GCNNNNNNNGC	5 cut(s)	302, 429, 1098, 1348, 1939
BstNI	CCWGG	4 cut(s)	201, 629, 1335, 1383
BstNSI	RCATGY	2 cut(s)	280, 591
BstPAI	GACNNNNGTC	1 cut(s)	1538
BstSCI	CCNGG	6 cut(s)	199, 408, 409, 627, 1333, 1381
BstSFI	CTRYAG	2 cut(s)	1395, 2009
BstSLI	GKGCMC	2 cut(s)	656, 964
BstUI	CGCG	1 cut(s)	1767
BstV1I	GCAGC	6 cut(s)	292, 789, 796, 1135, 1924, 1995
BstX2I	RGATCY	2 cut(s)	535, 1507
BstYI	RGATCY	2 cut(s)	535, 1507
BtgI	CCRYGG	3 cut(s)	33, 969, 1036
BtrI	CACGTC	1 cut(s)	1206
BtsCI	GGATG	7 cut(s)	214, 400, 754, 1102, 1187, 2010, 2021
BtsI	GCAGTG	3 cut(s)	1600, 1680, 1883
BtsIMutI	CAGTG	7 cut(s)	171, 642, 671, 1600, 1680, 1755, 1883
Cac8I	GCNNGC	5 cut(s)	782, 976, 1090, 1420, 1944
CaiI	CAGNNNCTG	1 cut(s)	1151
CciI	TCATGA	2 cut(s)	97, 1969
CfoI	GCGC	1 cut(s)	1103
Cfr10I	RCCGGY	1 cut(s)	2056
Cfr13I	GGNCC	5 cut(s)	136, 295, 344, 885, 1340
Cfr9I	CCCGGG	1 cut(s)	409
CseI	GACGC	1 cut(s)	845
CsiI	ACCWGGT	2 cut(s)	1333, 1381
Csp6I	GTAC	5 cut(s)	229, 700, 1134, 1674, 2054
CspCI	CAANNNNNGTGG	4 cut(s)	114, 149, 1197, 1232
CviAII	CATG	7 cut(s)	34, 98, 277, 588, 848, 1658, 1970
CviQI	GTAC	5 cut(s)	229, 700, 1134, 1674, 2054
DdeI	CTNAG	5 cut(s)	546, 842, 1347, 1440, 1863
DinI	GGCGCC	1 cut(s)	1102
DpnI	GATC	5 cut(s)	96, 537, 648, 1509, 1628
DpnII	GATC	5 cut(s)	94, 535, 646, 1507, 1626
DraI	TTTAAA	1 cut(s)	1560
EaeI	YGGCCR	2 cut(s)	1218, 2037
Eam1104I	CTCTTC	2 cut(s)	1033, 1724
EarI	CTCTTC	2 cut(s)	1033, 1724
Eco130I	CCWWGG	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	1861
Eco31I	GGTCTC	1 cut(s)	1324
Eco47I	GGWCC	3 cut(s)	136, 344, 885
Eco57I	CTGAAG	1 cut(s)	456
Eco72I	CACGTG	1 cut(s)	998
Eco88I	CYCGRG	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	344
EcoRI	GAATTC	2 cut(s)	634, 663
EcoRII	CCWGG	4 cut(s)	199, 627, 1333, 1381
EcoT14I	CCWWGG	1 cut(s)	33
EgeI	GGCGCC	1 cut(s)	1102
EheI	GGCGCC	1 cut(s)	1102
ErhI	CCWWGG	1 cut(s)	33
Esp3I	CGTCTC	1 cut(s)	1571
FaeI	CATG	7 cut(s)	37, 101, 280, 591, 851, 1661, 1973
FalI	AAGNNNNNCTT	4 cut(s)	148, 180, 305, 337
FaqI	GGGAC	2 cut(s)	358, 1854
FatI	CATG	7 cut(s)	33, 97, 276, 587, 847, 1657, 1969
FauI	CCCGC	1 cut(s)	1772
FbaI	TGATCA	1 cut(s)	1626
Fnu4HI	GCNGC	9 cut(s)	306, 778, 785, 815, 854, 1149, 1781, 1913, 2009
FokI	GGATG	7 cut(s)	201, 407, 761, 1109, 1174, 2017, 2028
Fsp4HI	GCNGC	9 cut(s)	306, 778, 785, 815, 854, 1149, 1781, 1913, 2009
FspBI	CTAG	4 cut(s)	147, 1082, 1922, 2062
GlaI	GCGC	1 cut(s)	1102
GluI	GCNGC	9 cut(s)	306, 778, 785, 815, 854, 1149, 1781, 1913, 2009
GsaI	CCCAGC	1 cut(s)	1905
GsuI	CTGGAG	3 cut(s)	222, 650, 992
HaeII	RGCGCY	1 cut(s)	1104
HapII	CCGG	4 cut(s)	392, 410, 686, 2057
HgaI	GACGC	1 cut(s)	845
HhaI	GCGC	1 cut(s)	1103
Hin1I	GRCGYC	2 cut(s)	856, 1101
Hin1II	CATG	7 cut(s)	37, 101, 280, 591, 851, 1661, 1973
Hin6I	GCGC	1 cut(s)	1101
HinP1I	GCGC	1 cut(s)	1101
HindIII	AAGCTT	2 cut(s)	1164, 1349
HpaII	CCGG	4 cut(s)	392, 410, 686, 2057
HphI	GGTGA	2 cut(s)	764, 1052
Hpy166II	GTNNAC	4 cut(s)	105, 136, 962, 1001
Hpy188III	TCNNGA	9 cut(s)	14, 98, 248, 392, 761, 1009, 1630, 1643, 1970
Hpy8I	GTNNAC	4 cut(s)	105, 136, 962, 1001
HpyAV	CCTTC	5 cut(s)	20, 360, 715, 761, 1699
HpyCH4III	ACNGT	3 cut(s)	290, 1704, 1759
HpyCH4IV	ACGT	4 cut(s)	898, 997, 1205, 1647
HpyF10VI	GCNNNNNNNGC	5 cut(s)	302, 429, 1098, 1348, 1939
HpyF3I	CTNAG	5 cut(s)	546, 842, 1347, 1440, 1863
HpySE526I	ACGT	4 cut(s)	898, 997, 1205, 1647
Hsp92I	GRCGYC	2 cut(s)	856, 1101
Hsp92II	CATG	7 cut(s)	37, 101, 280, 591, 851, 1661, 1973
HspAI	GCGC	1 cut(s)	1101
KasI	GGCGCC	1 cut(s)	1100
Kpn2I	TCCGGA	1 cut(s)	391
KpnI	GGTACC	1 cut(s)	2057
Ksp22I	TGATCA	1 cut(s)	1626
Kzo9I	GATC	5 cut(s)	94, 535, 646, 1507, 1626
LmnI	GCTCC	2 cut(s)	774, 811
Lsp1109I	GCAGC	6 cut(s)	292, 789, 796, 1135, 1924, 1995
LweI	GCATC	3 cut(s)	540, 1033, 1995
MabI	ACCWGGT	2 cut(s)	1333, 1381
MaeI	CTAG	4 cut(s)	147, 1082, 1922, 2062
MaeII	ACGT	4 cut(s)	898, 997, 1205, 1647
MaeIII	GTNAC	2 cut(s)	837, 866
MalI	GATC	5 cut(s)	96, 537, 648, 1509, 1628
MboI	GATC	5 cut(s)	94, 535, 646, 1507, 1626
MfeI	CAATTG	2 cut(s)	1365, 1543
MflI	RGATCY	2 cut(s)	535, 1507
MhlI	GDGCHC	3 cut(s)	656, 944, 964
MlsI	TGGCCA	2 cut(s)	1220, 2039
MluNI	TGGCCA	2 cut(s)	1220, 2039
Mly113I	GGCGCC	1 cut(s)	1101
MlyI	GAGTC	4 cut(s)	110, 515, 800, 999
MmeI	TCCRAC	2 cut(s)	149, 1339
Mox20I	TGGCCA	2 cut(s)	1220, 2039
MroI	TCCGGA	1 cut(s)	391
MscI	TGGCCA	2 cut(s)	1220, 2039
MseI	TTAA	7 cut(s)	225, 333, 1160, 1449, 1512, 1559, 1638
MslI	CAYNNNNRTG	3 cut(s)	674, 1462, 1483
Msp20I	TGGCCA	2 cut(s)	1220, 2039
MspA1I	CMGCKG	1 cut(s)	1148
MspCI	CTTAAG	1 cut(s)	224
MspI	CCGG	4 cut(s)	392, 410, 686, 2057
MspR9I	CCNGG	6 cut(s)	201, 410, 411, 629, 1335, 1383
MunI	CAATTG	2 cut(s)	1365, 1543
MvaI	CCWGG	4 cut(s)	201, 629, 1335, 1383
MvnI	CGCG	1 cut(s)	1767
MwoI	GCNNNNNNNGC	5 cut(s)	302, 429, 1098, 1348, 1939
NarI	GGCGCC	1 cut(s)	1101
NciI	CCSGG	2 cut(s)	410, 411
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	5 cut(s)	94, 535, 646, 1507, 1626
NlaIII	CATG	7 cut(s)	37, 101, 280, 591, 851, 1661, 1973
NlaIV	GGNNCC	7 cut(s)	345, 433, 537, 813, 886, 1102, 2055
NspI	RCATGY	2 cut(s)	280, 591
PagI	TCATGA	2 cut(s)	97, 1969
PceI	AGGCCT	1 cut(s)	1861
PfeI	GAWTC	8 cut(s)	42, 84, 152, 188, 388, 401, 467, 733
PkrI	GCNGC	9 cut(s)	307, 779, 786, 816, 855, 1150, 1782, 1914, 2010
PleI	GAGTC	4 cut(s)	109, 514, 800, 999
PluTI	GGCGCC	1 cut(s)	1104
PmaCI	CACGTG	1 cut(s)	998
PmlI	CACGTG	1 cut(s)	998
PpsI	GAGTC	4 cut(s)	109, 514, 800, 999
Ppu21I	YACGTR	1 cut(s)	998
PpuMI	RGGWCCY	1 cut(s)	344
PshAI	GACNNNNGTC	1 cut(s)	1538
PshBI	ATTAAT	1 cut(s)	1638
Psp5II	RGGWCCY	1 cut(s)	344
Psp6I	CCWGG	4 cut(s)	199, 627, 1333, 1381
PspCI	CACGTG	1 cut(s)	998
PspFI	CCCAGC	1 cut(s)	1901
PspGI	CCWGG	4 cut(s)	199, 627, 1333, 1381
PspN4I	GGNNCC	7 cut(s)	345, 433, 537, 813, 886, 1102, 2055
PspPI	GGNCC	5 cut(s)	136, 295, 344, 885, 1340
PspPPI	RGGWCCY	1 cut(s)	344
PstI	CTGCAG	1 cut(s)	2013
PstNI	CAGNNNCTG	1 cut(s)	1151
PsuI	RGATCY	2 cut(s)	535, 1507
PvuII	CAGCTG	1 cut(s)	1148
RsaI	GTAC	5 cut(s)	230, 701, 1135, 1675, 2055
RsaNI	GTAC	5 cut(s)	229, 700, 1134, 1674, 2054
RseI	CAYNNNNRTG	3 cut(s)	674, 1462, 1483
SaqAI	TTAA	7 cut(s)	225, 333, 1160, 1449, 1512, 1559, 1638
SatI	GCNGC	9 cut(s)	306, 778, 785, 815, 854, 1149, 1781, 1913, 2009
Sau3AI	GATC	5 cut(s)	94, 535, 646, 1507, 1626
Sau96I	GGNCC	5 cut(s)	136, 295, 344, 885, 1340
SchI	GAGTC	4 cut(s)	110, 515, 800, 999
ScrFI	CCNGG	6 cut(s)	201, 410, 411, 629, 1335, 1383
SduI	GDGCHC	3 cut(s)	656, 944, 964
SexAI	ACCWGGT	2 cut(s)	1333, 1381
SfaNI	GCATC	3 cut(s)	540, 1033, 1995
SfcI	CTRYAG	2 cut(s)	1395, 2009
SfoI	GGCGCC	1 cut(s)	1102
SinI	GGWCC	3 cut(s)	136, 344, 885
SmaI	CCCGGG	1 cut(s)	411
SmiMI	CAYNNNNRTG	3 cut(s)	674, 1462, 1483
SmlI	CTYRAG	2 cut(s)	224, 383
SmoI	CTYRAG	2 cut(s)	224, 383
SseBI	AGGCCT	1 cut(s)	1861
SsiI	CCGC	6 cut(s)	308, 423, 815, 853, 1765, 1780
SspDI	GGCGCC	1 cut(s)	1100
SspI	AATATT	1 cut(s)	1158
SspMI	CTAG	4 cut(s)	147, 1082, 1922, 2062
StuI	AGGCCT	1 cut(s)	1861
StyD4I	CCNGG	6 cut(s)	199, 408, 409, 627, 1333, 1381
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	3 cut(s)	290, 1704, 1759
TaiI	ACGT	4 cut(s)	901, 1000, 1208, 1650
TaqI	TCGA	1 cut(s)	1461
TatI	WGTACW	1 cut(s)	228
TauI	GCSGC	3 cut(s)	817, 856, 1783
TfiI	GAWTC	8 cut(s)	42, 84, 152, 188, 388, 401, 467, 733
Tru1I	TTAA	7 cut(s)	225, 333, 1160, 1449, 1512, 1559, 1638
Tru9I	TTAA	7 cut(s)	225, 333, 1160, 1449, 1512, 1559, 1638
TscAI	CASTG	7 cut(s)	178, 649, 678, 1600, 1687, 1762, 1883
TseI	GCWGC	6 cut(s)	305, 777, 784, 1148, 1912, 2008
TspDTI	ATGAA	7 cut(s)	407, 621, 846, 1250, 1642, 1646, 1788
TspGWI	ACGGA	4 cut(s)	639, 1239, 1544, 1595
TspMI	CCCGGG	1 cut(s)	409
TspRI	CASTG	7 cut(s)	178, 649, 678, 1600, 1687, 1762, 1883
Vha464I	CTTAAG	1 cut(s)	224
VneI	GTGCAC	1 cut(s)	960
VpaK11BI	GGWCC	3 cut(s)	136, 344, 885
VspI	ATTAAT	1 cut(s)	1638
XapI	RAATTY	3 cut(s)	634, 663, 2028
XceI	RCATGY	2 cut(s)	280, 591
XmaI	CCCGGG	1 cut(s)	409
XspI	CTAG	4 cut(s)	147, 1082, 1922, 2062

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.