RLG00000035806

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
Physical Location & Seq
Reverse (-)
71939744 .. 71940225
482 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035806

Sequence Viewer

Length: 405 bp
ATGGAAAACTCACCAAGAGATGCTGTTGATCTCAAGTTGATCAAGAATATAAATCCCAACCTTTTCATTCATGGTATTGCCAATGGGACATACATTTCACCCTTCTTTGCCATAAGGTTCAAAGAGGCACTCTTGCACTACTATGCCGTGTTTGATATGTTTGAAGCAACCATTCCTCGTGAAGATAAGCGGCGGATGATGTTTGAGAGAGAAGATATGATCAGGAATGTGAGGACTGGGTTGAAGCAGATCCCGTTGGACCAGGAGCGGCTGAAGAAAGTAAAGAACTTGTTGATGGGTTATCATAAGGATTTTAGAGTTGAAGAAGATGGGCATTGGATGCTGCAGGGATGGAAAGGAAGGATCATCGTGGCTCTCCTTCATTTTGGATACCTGCCTAGGTAG

Protein Analysis

135

Amino Acids

15.99

Weight (kDa)

9.55

Isoelectric Point (pI)

38.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 6 - 77 5e-13 GRAS domain family
GRAS PF03514 78 - 125 3.1e-06 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 268
AciI CCGC 3 cut(s) 190, 193, 268
AclWI GGATC 2 cut(s) 244, 371
AcuI CTGAAG 1 cut(s) 293
AgsI TTSAA 4 cut(s) 121, 164, 244, 323
AjnI CCWGG 1 cut(s) 261
AlwI GGATC 2 cut(s) 244, 371
ApeKI GCWGC 1 cut(s) 343
AspA2I CCTAGG 1 cut(s) 398
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 2 cut(s) 3, 90
AvaII GGWCC 1 cut(s) 259
AvrII CCTAGG 1 cut(s) 398
BauI CACGAG 1 cut(s) 177
BbvI GCAGC 1 cut(s) 330
BccI CCATC 3 cut(s) 289, 323, 345
BceAI ACGGC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 263
BciVI GTATCC 1 cut(s) 383
BclI TGATCA 2 cut(s) 39, 219
BfaI CTAG 1 cut(s) 399
BfmI CTRYAG 1 cut(s) 344
BfuI GTATCC 1 cut(s) 383
BisI GCNGC 3 cut(s) 191, 269, 344
BlnI CCTAGG 1 cut(s) 398
BlsI GCNGC 3 cut(s) 192, 270, 345
Bme1390I CCNGG 1 cut(s) 263
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmrFI CCNGG 1 cut(s) 263
BmrI ACTGGG 1 cut(s) 246
BmsI GCATC 2 cut(s) 10, 330
BmuI ACTGGG 1 cut(s) 246
BpuEI CTTGAG 1 cut(s) 17
BsaJI CCNNGG 1 cut(s) 398
Bse1I ACTGG 1 cut(s) 241
BseBI CCWGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 398
BseGI GGATG 3 cut(s) 201, 345, 356
BseNI ACTGG 1 cut(s) 241
BseXI GCAGC 1 cut(s) 330
BslFI GGGAC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 100
Bsp143I GATC 5 cut(s) 28, 39, 219, 249, 363
BspACI CCGC 3 cut(s) 190, 193, 268
BspMAI CTGCAG 1 cut(s) 348
BspPI GGATC 2 cut(s) 244, 371
BsrBI CCGCTC 1 cut(s) 268
BsrI ACTGG 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 398
BssMI GATC 5 cut(s) 28, 39, 219, 249, 363
BssSI CACGAG 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 398
Bst2BI CACGAG 1 cut(s) 177
Bst2UI CCWGG 1 cut(s) 263
BstAPI GCANNNNNTGC 1 cut(s) 340
BstF5I GGATG 3 cut(s) 201, 345, 356
BstKTI GATC 5 cut(s) 31, 42, 222, 252, 366
BstMBI GATC 5 cut(s) 28, 39, 219, 249, 363
BstMWI GCNNNNNNNGC 1 cut(s) 340
BstNI CCWGG 1 cut(s) 263
BstSCI CCNGG 1 cut(s) 261
BstSFI CTRYAG 1 cut(s) 344
BstV1I GCAGC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 249
BstYI RGATCY 1 cut(s) 249
BsuI GTATCC 1 cut(s) 383
BtsCI GGATG 3 cut(s) 201, 345, 356
Cfr13I GGNCC 1 cut(s) 259
CviAII CATG 1 cut(s) 71
CviJI RGCY 2 cut(s) 271, 374
CviKI_1 RGCY 2 cut(s) 271, 374
DpnI GATC 5 cut(s) 30, 41, 221, 251, 365
DpnII GATC 5 cut(s) 28, 39, 219, 249, 363
EciI GGCGGA 1 cut(s) 208
Eco130I CCWWGG 1 cut(s) 398
Eco47I GGWCC 1 cut(s) 259
Eco57I CTGAAG 1 cut(s) 293
EcoRII CCWGG 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 398
FaeI CATG 1 cut(s) 74
FaiI YATR 8 cut(s) 50, 72, 91, 113, 144, 158, 218, 306
FaqI GGGAC 1 cut(s) 100
FatI CATG 1 cut(s) 70
FbaI TGATCA 2 cut(s) 39, 219
Fnu4HI GCNGC 3 cut(s) 191, 269, 344
FokI GGATG 3 cut(s) 208, 352, 363
Fsp4HI GCNGC 3 cut(s) 191, 269, 344
FspBI CTAG 1 cut(s) 399
GluI GCNGC 3 cut(s) 191, 269, 344
Hin1II CATG 1 cut(s) 74
HphI GGTGA 2 cut(s) 3, 90
Hpy188III TCNNGA 3 cut(s) 43, 179, 223
HpyAV CCTTC 3 cut(s) 112, 354, 389
HpyCH4V TGCA 2 cut(s) 136, 346
HpyF10VI GCNNNNNNNGC 1 cut(s) 340
Hsp92II CATG 1 cut(s) 74
Ksp22I TGATCA 2 cut(s) 39, 219
Kzo9I GATC 5 cut(s) 28, 39, 219, 249, 363
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 5 cut(s) 208, 222, 248, 275, 332
Lsp1109I GCAGC 1 cut(s) 330
LweI GCATC 2 cut(s) 10, 330
MaeI CTAG 1 cut(s) 399
MalI GATC 5 cut(s) 30, 41, 221, 251, 365
MbiI CCGCTC 1 cut(s) 268
MboI GATC 5 cut(s) 28, 39, 219, 249, 363
MboII GAAGA 5 cut(s) 194, 224, 286, 335, 338
MflI RGATCY 1 cut(s) 249
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 3 cut(s) 118, 186, 225
MslI CAYNNNNRTG 1 cut(s) 141
MspR9I CCNGG 1 cut(s) 263
MvaI CCWGG 1 cut(s) 263
MwoI GCNNNNNNNGC 1 cut(s) 340
NdeII GATC 5 cut(s) 28, 39, 219, 249, 363
NlaIII CATG 1 cut(s) 74
PkrI GCNGC 3 cut(s) 192, 270, 345
Psp6I CCWGG 1 cut(s) 261
PspGI CCWGG 1 cut(s) 261
PspPI GGNCC 1 cut(s) 259
PstI CTGCAG 1 cut(s) 348
PsuI RGATCY 1 cut(s) 249
RseI CAYNNNNRTG 1 cut(s) 141
SatI GCNGC 3 cut(s) 191, 269, 344
Sau3AI GATC 5 cut(s) 28, 39, 219, 249, 363
Sau96I GGNCC 1 cut(s) 259
ScrFI CCNGG 1 cut(s) 263
SetI ASST 4 cut(s) 63, 119, 396, 404
SfaNI GCATC 2 cut(s) 10, 330
SfcI CTRYAG 1 cut(s) 344
SinI GGWCC 1 cut(s) 259
SmiMI CAYNNNNRTG 1 cut(s) 141
SmlI CTYRAG 1 cut(s) 32
SmoI CTYRAG 1 cut(s) 32
SsiI CCGC 3 cut(s) 190, 193, 268
SspMI CTAG 1 cut(s) 399
StyD4I CCNGG 1 cut(s) 261
StyI CCWWGG 1 cut(s) 398
TauI GCSGC 2 cut(s) 193, 271
TseI GCWGC 1 cut(s) 343
TspDTI ATGAA 3 cut(s) 55, 59, 371
VpaK11BI GGWCC 1 cut(s) 259
XmaJI CCTAGG 1 cut(s) 398
XspI CTAG 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.