Rmu_sc0001010.1_g000043

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001010.1
OG0000175
Physical Location & Seq
Reverse (-)
153889 .. 156214
2326 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001010.1_g000043.1.cds

Sequence Viewer

Length: 2232 bp
atgctaactcaatgtgcacaagctatggcgaactttgaccaacgaactgcaagtgaactactcaagcagataaggcagcacacaacgccccatggtgatgcaacccagaggttagcccattacttcgctgatggcctccacgcgcgatattctgtctcccatcccatggagaggttcaaatttgaccatggcccagtttcagtctgtccaaatcccaatcttgtaaatgggttcaaaataaatcatgaatccaccaatccagtattacttgcatccaaatctgatctttctagtgattcaagtaatgagggttcagaggtagatggtcttgatatcaatgactgcaaccatcctgtactcaagtacataaatgatattcttctggaagaagacttggagggtaagccctgcatgttgcaggactgtttagccctccaagctgctgagaagtctttctatgatgtccttaatcagaaggaccctcctttacccgaccaaccctctagttctgtgcaccaaagctctgagagttcagatgatgattccccacagagtttccgaaacagtaacggctcttttgctgttaagacagattgggtttgggatccggactgctctcccgtccagtcttctctatttgagtcttcgtcgaatacccgtttggtttctgattcattgtctgagttgcaaagtcttgggaattttggaggtgtgggggaagcaagcaagtttctttcaaatccgaaacttgaaatgtttgacttagagaggtttcaattgatgcctcaaggttcagttgcatctgagtcaggggatgatggctacaactcaaccaatgtatcgaagggaaagaagactcatcaaagggaggatagtcattttccagaagaagagagaagcaacaagcagtctgctgctgtaggggacgactttgagccacaagaaatgtttgatgaggttttgctgtgtcctgaaaatcatgatgctaagctttgtgctgattatgagtctttgaaaactgaaggagaagggaagttgcagcgtaacaagcagtcaacaggattgaaggcaaagcgacagagtaacattggcgagttggtagatttgtgcacaatgctaactcaatgtgcacaagctgtggcgaactttgaccaacgaactgcaagtgaactactcaagcagattaggcagcacacaacgccccatggtgatgcaacccagaggttagcccattactttgctgatggcctccacgcgcggttggctggtgccaaaatcccatcatattcgcctcttgtaagtgtgcagacatcagctgctgaaatcttaaaagcataccaggtagttattaaagcatgccctttcaagaagatgtcacaattctttgccaacagaacaatcatgaagctagcagaaaaagcaacaaggcttcacattattgattttggtatttcttatggattccaatggccttgcctgatccaacgtctgtcccaaagacctggtggacctcctaagcttcgtatcacagccattgagcttccccaaccaggttttcgacctacagaaagagttgaagagaccggacgtcgcttagaaaaatacgccaagagatttgatgtcccatttgagtataatgtcattgcccagaaatgggaaactatccgaattgaggacatcaaaattgatagaactgagctgattgtggtcaattgtttgcaccggttaaggaacataccagatgagacggtgatggtgaacagtccaagagatgctgtccttaagttgataaggaaaattagtccagaccttttcattcatggtgttgtcaatgggacatacaatgctcccttctttctcacacgatttagagaggcactcctccacttctattcactgtttgatatgcttgaggtgaccatctctcgtgaagatgaacagcgggtgatgtttgaacaagaaatatatggtagagatatacttaatgttgtagcgtgtgaaggactggaaagagttgaaaggcctgaaacatacaggcagtggcaggtcaggaatttgagggctgggttcaagcagctaccattagaccagaagctgttgaaggaagtgaagactatgtcaaaagtaatgcgttatcataatgattttagagttgatgaagatggccattggatgctgcagggatggaaaggaagaaccatcatggctctttctttttggaagcctacctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS RVT_2

Protein Analysis

743

Amino Acids

84.35

Weight (kDa)

5.92

Isoelectric Point (pI)

48.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1591
Acc36I ACCTGC 1 cut(s) 2035
AccB1I GGYRCC 1 cut(s) 1268
AccB7I CCANNNNNTGG 1 cut(s) 166
AccII CGCG 4 cut(s) 143, 145, 1256, 1258
AccIII TCCGGA 1 cut(s) 607
AciI CCGC 2 cut(s) 1258, 1942
AclWI GGATC 3 cut(s) 599, 612, 1474
AcoI YGGCCR 1 cut(s) 2164
AcsI RAATTY 3 cut(s) 179, 700, 2053
AcuI CTGAAG 1 cut(s) 1041
AcyI GRCGYC 1 cut(s) 1588
AfaI GTAC 2 cut(s) 357, 365
AfiI CCNNNNNNNGG 6 cut(s) 166, 171, 1550, 1653, 1654, 1672
AflII CTTAAG 1 cut(s) 1781
AgeI ACCGGT 1 cut(s) 1722
AhdI GACNNNNNGTC 1 cut(s) 1587
AjnI CCWGG 3 cut(s) 1338, 1501, 1549
AjuI GAANNNNNNNTTGG 4 cut(s) 644, 676, 1539, 1571
Alw21I GWGCWC 4 cut(s) 19, 516, 1112, 1132
Alw26I GTCTC 3 cut(s) 160, 1574, 1739
Alw44I GTGCAC 4 cut(s) 15, 512, 1108, 1128
AlwI GGATC 3 cut(s) 599, 612, 1474
AlwNI CAGNNNCTG 2 cut(s) 1319, 2095
Aor13HI TCCGGA 1 cut(s) 607
AoxI GGCC 6 cut(s) 133, 190, 1246, 1469, 2021, 2164
ApaLI GTGCAC 4 cut(s) 15, 512, 1108, 1128
ApeKI GCWGC 8 cut(s) 76, 440, 914, 1039, 1189, 1316, 2074, 2176
ApoI RAATTY 3 cut(s) 179, 700, 2053
AsiGI ACCGGT 1 cut(s) 1722
Asp700I GAANNNNTTC 1 cut(s) 452
AspLEI GCGC 2 cut(s) 145, 1258
AspS9I GGNCC 3 cut(s) 191, 478, 1508
AsuHPI GGTGA 6 cut(s) 107, 1220, 1762, 1768, 1927, 1957
AsuNHI GCTAGC 1 cut(s) 1408
AvaII GGWCC 2 cut(s) 478, 1508
BaeGI GKGCMC 4 cut(s) 19, 516, 1112, 1132
BaeI ACNNNNGTAYC 2 cut(s) 822, 855
BalI TGGCCA 1 cut(s) 2166
BamHI GGATCC 1 cut(s) 604
BanI GGYRCC 1 cut(s) 1268
BauI CACGAG 1 cut(s) 1926
BbsI GAAGAC 5 cut(s) 396, 621, 636, 860, 2117
Bbv12I GWGCWC 4 cut(s) 19, 516, 1112, 1132
BbvI GCAGC 8 cut(s) 88, 427, 901, 1051, 1201, 1303, 2086, 2163
BceAI ACGGC 1 cut(s) 586
BciT130I CCWGG 3 cut(s) 1340, 1503, 1551
BcoDI GTCTC 3 cut(s) 160, 1574, 1739
BfaI CTAG 4 cut(s) 291, 504, 1409, 2230
BfmI CTRYAG 3 cut(s) 918, 1563, 2177
BfrI CTTAAG 1 cut(s) 1781
BfuAI ACCTGC 1 cut(s) 2035
BisI GCNGC 8 cut(s) 77, 441, 915, 1040, 1190, 1317, 2075, 2177
BlpI GCTNAGC 1 cut(s) 987
BlsI GCNGC 8 cut(s) 78, 442, 916, 1041, 1191, 1318, 2076, 2178
Bme1390I CCNGG 3 cut(s) 1340, 1503, 1551
Bme18I GGWCC 2 cut(s) 478, 1508
BmeRI GACNNNNNGTC 1 cut(s) 1587
BmgT120I GGNCC 3 cut(s) 191, 478, 1508
BmiI GGNNCC 3 cut(s) 480, 606, 1270
BmrFI CCNGG 3 cut(s) 1340, 1503, 1551
BmrI ACTGGG 1 cut(s) 188
BmsI GCATC 8 cut(s) 88, 281, 771, 809, 973, 1201, 1762, 2163
BmtI GCTAGC 1 cut(s) 1412
BmuI ACTGGG 1 cut(s) 188
BpiI GAAGAC 5 cut(s) 396, 621, 636, 860, 2117
BplI GAGNNNNNCTC 2 cut(s) 1863, 1895
Bpu10I CCTNAGC 1 cut(s) 1515
Bpu1102I GCTNAGC 1 cut(s) 987
BpuEI CTTGAG 5 cut(s) 47, 344, 771, 1160, 1931
BsaHI GRCGYC 1 cut(s) 1588
BsaI GGTCTC 1 cut(s) 1574
BsaJI CCNNGG 4 cut(s) 91, 165, 187, 1204
BsaWI WCCGGW 3 cut(s) 607, 1583, 1722
Bsc4I CCNNNNNNNGG 6 cut(s) 166, 171, 1550, 1653, 1654, 1672
Bse118I RCCGGY 1 cut(s) 1722
Bse1I ACTGG 4 cut(s) 194, 260, 625, 2010
Bse3DI GCAATG 1 cut(s) 1641
BseAI TCCGGA 1 cut(s) 607
BseBI CCWGG 3 cut(s) 1340, 1503, 1551
BseDI CCNNGG 4 cut(s) 91, 165, 187, 1204
BseGI GGATG 6 cut(s) 160, 272, 349, 820, 2178, 2189
BseLI CCNNNNNNNGG 6 cut(s) 166, 171, 1550, 1653, 1654, 1672
BseMI GCAATG 1 cut(s) 1641
BseMII CTCAG 5 cut(s) 435, 516, 672, 795, 1686
BseNI ACTGG 4 cut(s) 194, 260, 625, 2010
BseRI GAGGAG 1 cut(s) 1871
BseSI GKGCMC 4 cut(s) 19, 516, 1112, 1132
BseXI GCAGC 8 cut(s) 88, 427, 901, 1051, 1201, 1303, 2086, 2163
BseYI CCCAGC 1 cut(s) 2063
BsgI GTGCAG 1 cut(s) 1325
Bsh1236I CGCG 4 cut(s) 143, 145, 1256, 1258
BshFI GGCC 6 cut(s) 135, 192, 1248, 1471, 2023, 2166
BshNI GGYRCC 1 cut(s) 1268
BshTI ACCGGT 1 cut(s) 1722
BsiHKAI GWGCWC 4 cut(s) 19, 516, 1112, 1132
BsiSI CCGG 3 cut(s) 608, 1584, 1723
BslFI GGGAC 4 cut(s) 938, 1477, 1607, 1849
BslI CCNNNNNNNGG 6 cut(s) 166, 171, 1550, 1653, 1654, 1672
BsmAI GTCTC 3 cut(s) 160, 1574, 1739
BsmBI CGTCTC 1 cut(s) 1739
BsmFI GGGAC 4 cut(s) 938, 1477, 1607, 1849
BsnI GGCC 6 cut(s) 135, 192, 1248, 1471, 2023, 2166
Bso31I GGTCTC 1 cut(s) 1574
Bsp1286I GDGCHC 4 cut(s) 19, 516, 1112, 1132
Bsp13I TCCGGA 1 cut(s) 607
Bsp143I GATC 3 cut(s) 283, 604, 1479
Bsp1720I GCTNAGC 1 cut(s) 987
Bsp19I CCATGG 4 cut(s) 91, 165, 187, 1204
BspACI CCGC 2 cut(s) 1258, 1942
BspANI GGCC 6 cut(s) 135, 192, 1248, 1471, 2023, 2166
BspCNI CTCAG 5 cut(s) 436, 517, 673, 796, 1687
BspEI TCCGGA 1 cut(s) 607
BspFNI CGCG 4 cut(s) 143, 145, 1256, 1258
BspHI TCATGA 3 cut(s) 244, 979, 1401
BspLI GGNNCC 3 cut(s) 480, 606, 1270
BspMAI CTGCAG 1 cut(s) 2181
BspMI ACCTGC 1 cut(s) 2035
BspOI GCTAGC 1 cut(s) 1412
BspPI GGATC 3 cut(s) 599, 612, 1474
BspT107I GGYRCC 1 cut(s) 1268
BspTI CTTAAG 1 cut(s) 1781
BspTNI GGTCTC 1 cut(s) 1574
BsrDI GCAATG 1 cut(s) 1641
BsrFI RCCGGY 1 cut(s) 1722
BsrI ACTGG 4 cut(s) 194, 260, 625, 2010
BssAI RCCGGY 1 cut(s) 1722
BssECI CCNNGG 4 cut(s) 91, 165, 187, 1204
BssMI GATC 3 cut(s) 283, 604, 1479
BssNI GRCGYC 1 cut(s) 1588
BssSI CACGAG 1 cut(s) 1926
BssT1I CCWWGG 4 cut(s) 91, 165, 187, 1204
Bst2BI CACGAG 1 cut(s) 1926
Bst2UI CCWGG 3 cut(s) 1340, 1503, 1551
Bst4CI ACNGT 5 cut(s) 425, 566, 1750, 1763, 1899
Bst6I CTCTTC 2 cut(s) 885, 1572
BstACI GRCGYC 1 cut(s) 1588
BstAFI CTTAAG 1 cut(s) 1781
BstC8I GCNNGC 3 cut(s) 724, 1357, 1410
BstDEI CTNAG 9 cut(s) 444, 525, 681, 763, 804, 987, 1515, 1594, 1695
BstDSI CCRYGG 4 cut(s) 91, 165, 187, 1204
BstEII GGTNACC 1 cut(s) 1915
BstF5I GGATG 6 cut(s) 160, 272, 349, 820, 2178, 2189
BstFNI CGCG 4 cut(s) 143, 145, 1256, 1258
BstHHI GCGC 2 cut(s) 145, 1258
BstKTI GATC 3 cut(s) 286, 607, 1482
BstMAI GTCTC 3 cut(s) 160, 1574, 1739
BstMBI GATC 3 cut(s) 283, 604, 1479
BstMWI GCNNNNNNNGC 8 cut(s) 73, 85, 437, 1048, 1186, 1198, 1262, 1418
BstNI CCWGG 3 cut(s) 1340, 1503, 1551
BstNSI RCATGY 2 cut(s) 415, 1359
BstPI GGTNACC 1 cut(s) 1915
BstSCI CCNGG 3 cut(s) 1338, 1501, 1549
BstSFI CTRYAG 3 cut(s) 918, 1563, 2177
BstSLI GKGCMC 4 cut(s) 19, 516, 1112, 1132
BstUI CGCG 4 cut(s) 143, 145, 1256, 1258
BstV1I GCAGC 8 cut(s) 88, 427, 901, 1051, 1201, 1303, 2086, 2163
BstV2I GAAGAC 5 cut(s) 396, 621, 636, 860, 2117
BstX2I RGATCY 1 cut(s) 604
BstXI CCANNNNNNTGG 1 cut(s) 1502
BstYI RGATCY 1 cut(s) 604
BsuRI GGCC 6 cut(s) 135, 192, 1248, 1471, 2023, 2166
BtgI CCRYGG 4 cut(s) 91, 165, 187, 1204
BtsCI GGATG 6 cut(s) 160, 272, 349, 820, 2178, 2189
BtsI GCAGTG 1 cut(s) 2045
BtsIMutI CAGTG 2 cut(s) 1895, 2045
BveI ACCTGC 1 cut(s) 2035
Cac8I GCNNGC 3 cut(s) 724, 1357, 1410
CaiI CAGNNNCTG 2 cut(s) 1319, 2095
CciI TCATGA 3 cut(s) 244, 979, 1401
CfoI GCGC 2 cut(s) 145, 1258
Cfr10I RCCGGY 1 cut(s) 1722
Cfr13I GGNCC 3 cut(s) 191, 478, 1508
CsiI ACCWGGT 3 cut(s) 1338, 1501, 1549
Csp6I GTAC 2 cut(s) 356, 364
CspAI ACCGGT 1 cut(s) 1722
CviQI GTAC 2 cut(s) 356, 364
DdeI CTNAG 9 cut(s) 444, 525, 681, 763, 804, 987, 1515, 1594, 1695
DpnI GATC 3 cut(s) 285, 606, 1481
DpnII GATC 3 cut(s) 283, 604, 1479
DriI GACNNNNNGTC 1 cut(s) 1587
EaeI YGGCCR 1 cut(s) 2164
Eam1104I CTCTTC 2 cut(s) 885, 1572
Eam1105I GACNNNNNGTC 1 cut(s) 1587
EarI CTCTTC 2 cut(s) 885, 1572
Eco130I CCWWGG 4 cut(s) 91, 165, 187, 1204
Eco147I AGGCCT 1 cut(s) 2023
Eco31I GGTCTC 1 cut(s) 1574
Eco32I GATATC 1 cut(s) 334
Eco47I GGWCC 2 cut(s) 478, 1508
Eco57I CTGAAG 1 cut(s) 1041
Eco91I GGTNACC 1 cut(s) 1915
EcoO109I RGGNCCY 1 cut(s) 478
EcoO65I GGTNACC 1 cut(s) 1915
EcoRII CCWGG 3 cut(s) 1338, 1501, 1549
EcoRV GATATC 1 cut(s) 334
EcoT14I CCWWGG 4 cut(s) 91, 165, 187, 1204
ErhI CCWWGG 4 cut(s) 91, 165, 187, 1204
Esp3I CGTCTC 1 cut(s) 1739
FaqI GGGAC 4 cut(s) 938, 1477, 1607, 1849
FauI CCCGC 1 cut(s) 1935
Fnu4HI GCNGC 8 cut(s) 77, 441, 915, 1040, 1190, 1317, 2075, 2177
FokI GGATG 6 cut(s) 147, 259, 336, 827, 2185, 2196
Fsp4HI GCNGC 8 cut(s) 77, 441, 915, 1040, 1190, 1317, 2075, 2177
FspBI CTAG 4 cut(s) 291, 504, 1409, 2230
GlaI GCGC 2 cut(s) 144, 1257
GluI GCNGC 8 cut(s) 77, 441, 915, 1040, 1190, 1317, 2075, 2177
GsaI CCCAGC 1 cut(s) 2067
HaeIII GGCC 6 cut(s) 135, 192, 1248, 1471, 2023, 2166
HapII CCGG 3 cut(s) 608, 1584, 1723
HhaI GCGC 2 cut(s) 145, 1258
Hin1I GRCGYC 1 cut(s) 1588
Hin6I GCGC 2 cut(s) 143, 1256
HinP1I GCGC 2 cut(s) 143, 1256
HincII GTYRAC 1 cut(s) 1056
HindII GTYRAC 1 cut(s) 1056
HindIII AAGCTT 2 cut(s) 989, 1517
HinfI GANTC 9 cut(s) 248, 296, 542, 641, 671, 806, 856, 1007, 1461
HpaII CCGG 3 cut(s) 608, 1584, 1723
HphI GGTGA 6 cut(s) 107, 1220, 1762, 1768, 1927, 1957
Hpy166II GTNNAC 9 cut(s) 17, 56, 514, 1056, 1110, 1130, 1169, 1508, 1759
Hpy8I GTNNAC 9 cut(s) 17, 56, 514, 1056, 1110, 1130, 1169, 1508, 1759
Hpy99I CGWCG 2 cut(s) 652, 1593
HpyAV CCTTC 8 cut(s) 469, 838, 1016, 1022, 1060, 1861, 1994, 2095
HpyCH4III ACNGT 5 cut(s) 425, 566, 1750, 1763, 1899
HpyCH4IV ACGT 2 cut(s) 1486, 1588
HpyF10VI GCNNNNNNNGC 8 cut(s) 73, 85, 437, 1048, 1186, 1198, 1262, 1418
HpyF3I CTNAG 9 cut(s) 444, 525, 681, 763, 804, 987, 1515, 1594, 1695
HpySE526I ACGT 2 cut(s) 1486, 1588
Hsp92I GRCGYC 1 cut(s) 1588
HspAI GCGC 2 cut(s) 143, 1256
Kpn2I TCCGGA 1 cut(s) 607
Kzo9I GATC 3 cut(s) 283, 604, 1479
LmnI GCTCC 1 cut(s) 1852
Lsp1109I GCAGC 8 cut(s) 88, 427, 901, 1051, 1201, 1303, 2086, 2163
LweI GCATC 8 cut(s) 88, 281, 771, 809, 973, 1201, 1762, 2163
MabI ACCWGGT 3 cut(s) 1338, 1501, 1549
MaeI CTAG 4 cut(s) 291, 504, 1409, 2230
MaeII ACGT 2 cut(s) 1486, 1588
MaeIII GTNAC 5 cut(s) 566, 1043, 1082, 1374, 1915
MalI GATC 3 cut(s) 285, 606, 1481
MboI GATC 3 cut(s) 283, 604, 1479
MfeI CAATTG 2 cut(s) 776, 1711
MflI RGATCY 1 cut(s) 604
MhlI GDGCHC 4 cut(s) 19, 516, 1112, 1132
MlsI TGGCCA 1 cut(s) 2166
MluCI AATT 9 cut(s) 179, 700, 776, 1379, 1668, 1683, 1711, 1797, 2053
MluNI TGGCCA 1 cut(s) 2166
MlyI GAGTC 4 cut(s) 650, 815, 850, 1016
MmeI TCCRAC 1 cut(s) 1507
Mox20I TGGCCA 1 cut(s) 2166
MroI TCCGGA 1 cut(s) 607
MroXI GAANNNNTTC 1 cut(s) 452
MscI TGGCCA 1 cut(s) 2166
MseI TTAA 7 cut(s) 468, 585, 1328, 1350, 1727, 1782, 1983
MslI CAYNNNNRTG 2 cut(s) 96, 1209
Msp20I TGGCCA 1 cut(s) 2166
MspA1I CMGCKG 2 cut(s) 1316, 1942
MspCI CTTAAG 1 cut(s) 1781
MspI CCGG 3 cut(s) 608, 1584, 1723
MspR9I CCNGG 3 cut(s) 1340, 1503, 1551
MunI CAATTG 2 cut(s) 776, 1711
MvaI CCWGG 3 cut(s) 1340, 1503, 1551
MvnI CGCG 4 cut(s) 143, 145, 1256, 1258
MwoI GCNNNNNNNGC 8 cut(s) 73, 85, 437, 1048, 1186, 1198, 1262, 1418
NcoI CCATGG 4 cut(s) 91, 165, 187, 1204
NdeII GATC 3 cut(s) 283, 604, 1479
NheI GCTAGC 1 cut(s) 1408
NlaIV GGNNCC 3 cut(s) 480, 606, 1270
NmuCI GTSAC 2 cut(s) 1374, 1915
NspI RCATGY 2 cut(s) 415, 1359
PaeI GCATGC 1 cut(s) 1359
PagI TCATGA 3 cut(s) 244, 979, 1401
PceI AGGCCT 1 cut(s) 2023
PdmI GAANNNNTTC 1 cut(s) 452
PfeI GAWTC 5 cut(s) 248, 296, 542, 671, 1461
PflFI GACNNNGTC 1 cut(s) 2116
PflMI CCANNNNNTGG 1 cut(s) 166
PinAI ACCGGT 1 cut(s) 1722
PkrI GCNGC 8 cut(s) 78, 442, 916, 1041, 1191, 1318, 2076, 2178
PleI GAGTC 4 cut(s) 649, 814, 850, 1015
PpsI GAGTC 4 cut(s) 649, 814, 850, 1015
PpuMI RGGWCCY 1 cut(s) 478
Psp5II RGGWCCY 1 cut(s) 478
Psp6I CCWGG 3 cut(s) 1338, 1501, 1549
PspEI GGTNACC 1 cut(s) 1915
PspFI CCCAGC 1 cut(s) 2063
PspGI CCWGG 3 cut(s) 1338, 1501, 1549
PspN4I GGNNCC 3 cut(s) 480, 606, 1270
PspPI GGNCC 3 cut(s) 191, 478, 1508
PspPPI RGGWCCY 1 cut(s) 478
PsrI GAACNNNNNNTAC 2 cut(s) 295, 327
PstI CTGCAG 1 cut(s) 2181
PstNI CAGNNNCTG 2 cut(s) 1319, 2095
PsuI RGATCY 1 cut(s) 604
PsyI GACNNNGTC 1 cut(s) 2116
PvuII CAGCTG 1 cut(s) 1316
RsaI GTAC 2 cut(s) 357, 365
RsaNI GTAC 2 cut(s) 356, 364
RseI CAYNNNNRTG 2 cut(s) 96, 1209
SaqAI TTAA 7 cut(s) 468, 585, 1328, 1350, 1727, 1782, 1983
SatI GCNGC 8 cut(s) 77, 441, 915, 1040, 1190, 1317, 2075, 2177
Sau3AI GATC 3 cut(s) 283, 604, 1479
Sau96I GGNCC 3 cut(s) 191, 478, 1508
SchI GAGTC 4 cut(s) 650, 815, 850, 1016
ScrFI CCNGG 3 cut(s) 1340, 1503, 1551
SduI GDGCHC 4 cut(s) 19, 516, 1112, 1132
SexAI ACCWGGT 3 cut(s) 1338, 1501, 1549
SfaNI GCATC 8 cut(s) 88, 281, 771, 809, 973, 1201, 1762, 2163
SfcI CTRYAG 3 cut(s) 918, 1563, 2177
SinI GGWCC 2 cut(s) 478, 1508
SmiMI CAYNNNNRTG 2 cut(s) 96, 1209
SmlI CTYRAG 6 cut(s) 62, 359, 786, 1175, 1781, 1910
SmoI CTYRAG 6 cut(s) 62, 359, 786, 1175, 1781, 1910
SphI GCATGC 1 cut(s) 1359
Sse9I AATT 9 cut(s) 179, 700, 776, 1379, 1668, 1683, 1711, 1797, 2053
SseBI AGGCCT 1 cut(s) 2023
SsiI CCGC 2 cut(s) 1258, 1942
SspMI CTAG 4 cut(s) 291, 504, 1409, 2230
StuI AGGCCT 1 cut(s) 2023
StyD4I CCNGG 3 cut(s) 1338, 1501, 1549
StyI CCWWGG 4 cut(s) 91, 165, 187, 1204
TaaI ACNGT 5 cut(s) 425, 566, 1750, 1763, 1899
TaiI ACGT 2 cut(s) 1489, 1591
TaqI TCGA 3 cut(s) 650, 842, 1558
TasI AATT 9 cut(s) 179, 700, 776, 1379, 1668, 1683, 1711, 1797, 2053
TatI WGTACW 2 cut(s) 355, 363
TfiI GAWTC 5 cut(s) 248, 296, 542, 671, 1461
Tru1I TTAA 7 cut(s) 468, 585, 1328, 1350, 1727, 1782, 1983
Tru9I TTAA 7 cut(s) 468, 585, 1328, 1350, 1727, 1782, 1983
TscAI CASTG 2 cut(s) 1902, 2045
TseFI GTSAC 2 cut(s) 1374, 1915
TseI GCWGC 8 cut(s) 76, 440, 914, 1039, 1189, 1316, 2074, 2176
Tsp45I GTSAC 2 cut(s) 1374, 1915
TspDTI ATGAA 7 cut(s) 261, 663, 1418, 1804, 1808, 1950, 2172
TspRI CASTG 2 cut(s) 1902, 2045
Tth111I GACNNNGTC 1 cut(s) 2116
Van91I CCANNNNNTGG 1 cut(s) 166
Vha464I CTTAAG 1 cut(s) 1781
VneI GTGCAC 4 cut(s) 15, 512, 1108, 1128
VpaK11BI GGWCC 2 cut(s) 478, 1508
XapI RAATTY 3 cut(s) 179, 700, 2053
XceI RCATGY 2 cut(s) 415, 1359
XcmI CCANNNNNNNNNTGG 1 cut(s) 1502
XmnI GAANNNNTTC 1 cut(s) 452
XspI CTAG 4 cut(s) 291, 504, 1409, 2230
ZraI GACGTC 1 cut(s) 1589
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.