Prupe.I004400_v2.0.a1

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
scaffold_35
OG0000175
Physical Location & Seq
Forward (+)
740 .. 3677
2938 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.I004400.1

Sequence Viewer

Length: 2121 bp
ATGGATACCCTTCTTGAAAGATATTATCTTTCCATGGAAAGATTTAATTTTGGGCATGGCTCAGCTTCACTCTATTCTAATCAGAATCTTGTAAATGGGTTCCAAGTAAATCAAGAATCCACCAGTCCAGTTCACCTTTCAACCAATTTGGACCACCCTAGTGATTCAAGTACTTCTTTGAGCTCTGGTTCTGATGGAGATACTGTTGACTTTAGTGATTACAATCACCCTGTGCTTAAGTACGTAAGTGATATTCTTCTAGAAGAAGACCTGGAGGGTAAGACCTGCATGTTGCAGGACTGTTTGGCCCTCCAAGCTGCTGAAAAATCTTTCTATGATGTCCTTAATCAGGAGGACCCTCCTTCACCCAACCAACTCCCTCTTTCTGTGCACCAAAGCTTTGAGAACTCAGATGATGATTCCCCACGTAGTTGTCATAGAAGTAATGGCTCTATTGCTCCAAACACAGACTGGGTTTTTGATCCTTCAGAAACCTCAAATGTCCAATCTTCTCTTGTTCAGTCTCTATCAGATGCTGGTTTGGTTTCAGATTCACTTTCTGAGATTGGGCATTCTGGAGGGTTAGGGGAAGCCAGCAAGTTCCTTCCAAATGTAAAACTGGAGGGGAACCGGTTAATGCCTCCTGGTCTTGATCAGTGGCCTTCAAGTACTAACATACTGATGACAACGCCGGACAATGATGGCTACAACTCAACAAATGGATCAAAGGGAAAGAAAAATCATCAAAGGGAGGATGCTGATTATCCAGAAGAAGGCAGAAGCAACAAGCAGCCAGTTGCTTTTGCTGACGACTCTGAGCCGCAAGAAATGTTTGATGAGGTATTACTTTGTCATGGGAATCATGAGTTTGAGTCTTGTTCTCCTGATGAATCTTTGATAGCTGAGGGAAGTGGGAAGTTGCAGCGCAACAAGCAAAAGGGGTCTAAAACAGCGCGTTCAAAGAAACAGAATAACAACTGGGAACTAGTAGATTTGAGCACACTGTTAACTCAATGTGCACAAGCTGTGGCAAGCTATGACCAAAGAACTGCAAGTGAACTACTCAAGCAGATTAGGCAGCATTCTTCCCCGTATGGTGATGCTACCCAGAGATCAGCTCATTACTTTGCGGATGGCCTAGAGGCACGCTTGGCTGGAGCCAGAACTCCATCATACTCTCCCCTTGTTAGTATGCAGATATCAGCTGCTGAAATCTTAAAAGCTCATGAGGTATATGTTACTTCATCCCCTTTCAAGAAGTTGTCTAATTTCTTGGCGAACAGAACAATTCTGAAACTAGCAGAAAAAGCAACAAGGCTTCACGTTATTGATTTTGGCATTTCATATGGTTTCCAATGGCCATGCTTTATCCACCGTCTCTCCGAGAGACCGGGTGGACCTCCTAAGCTTCGTATCACAGCAATTGAGCTTCCCCAACCAGGTTTCCGACCTACAGAAAGGGTTGAAGAGACGGGGCGTCGCCTGGAAAAATATGCTGAGAGATTTAATGTCCCATTTGAGTACAATGTCATTGCTCAGAAGTGGGAAACAATCCAATTTGAGGATCTTAAAATTGACAGAAATGAGGTGATTGTGGTCAATTGTATGAACCGGCTAAAGCACATGCCTGATGAGACAGTGATGGTGAACAGTCCAAGAGACATTGTCCTAAAGTTGATCAAGAAAATTAATCCAGACCTATTCATTCATGGGGTTGTCAATGGGACATACAATTCACCCTTCTTTGTCACACGGTTCAAAGAGGCACTCTTCCACTTCTCTGCACTGTTTGATATGTTTGAGGCCAGTGTTCCTCGTGAAGATGAACGGCGGCTGCTGTTCGAAAAAGCTGTATATGGTAGGGACATATTGAATGTCGTAGCGTGTGAGGGACTGGAAAGAGTTGAAAGGCCTGAGACATACAAGCAGTGGCAGGTTAGGAATGTGAGGGCTGGGTTCAAGCAGCTCCCACTAGACCAAGAGCTTTTGAAGAGAGTGAAGAGAATGTTGAAGTTTATGGGTTATCATAATGATTTTAGCATTGATGAAGATGGCCATTGGATGCTGCAAGGATGGAAAGGAAGAATCACCAGGGCTCTTTCCTTTTGGAAAAAAGCCTAG

Protein Analysis

707

Amino Acids

79.89

Weight (kDa)

5.64

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 293, 1924
AccII CGCG 1 cut(s) 955
AciI CCGC 3 cut(s) 821, 1130, 1831
AclWI GGATC 3 cut(s) 476, 730, 1572
AcoI YGGCCR 2 cut(s) 1358, 2053
AcuI CTGAAG 1 cut(s) 471
AcyI GRCGYC 1 cut(s) 1477
AdeI CACNNNGTG 1 cut(s) 232
AfaI GTAC 4 cut(s) 172, 242, 670, 1523
AfiI CCNNNNNNNGG 4 cut(s) 349, 773, 1439, 1561
AflII CTTAAG 1 cut(s) 236
AgeI ACCGGT 1 cut(s) 630
AhdI GACNNNNNGTC 1 cut(s) 1476
AhlI ACTAGT 1 cut(s) 985
AjnI CCWGG 5 cut(s) 270, 643, 1438, 1482, 2090
AleI CACNNNNGTG 1 cut(s) 159
Alw21I GWGCWC 4 cut(s) 185, 393, 1001, 1021
Alw26I GTCTC 7 cut(s) 528, 1381, 1382, 1463, 1628, 1653, 1910
Alw44I GTGCAC 2 cut(s) 389, 1017
AlwI GGATC 3 cut(s) 476, 730, 1572
AlwNI CAGNNNCTG 2 cut(s) 536, 1208
AoxI GGCC 7 cut(s) 306, 659, 1135, 1358, 1803, 1910, 2053
ApaLI GTGCAC 2 cut(s) 389, 1017
ApeKI GCWGC 8 cut(s) 317, 790, 922, 1078, 1205, 1834, 1963, 2065
ArsI GACNNNNNNTTYG 2 cut(s) 461, 493
AseI ATTAAT 1 cut(s) 1689
AsiGI ACCGGT 1 cut(s) 630
AspLEI GCGC 2 cut(s) 927, 955
AspS9I GGNCC 4 cut(s) 151, 307, 355, 1397
AsuC2I CCSGG 1 cut(s) 1392
AsuHPI GGTGA 8 cut(s) 125, 218, 357, 1109, 1600, 1657, 1728, 2080
AsuII TTCGAA 1 cut(s) 1842
AvaII GGWCC 3 cut(s) 151, 355, 1397
BaeGI GKGCMC 2 cut(s) 393, 1021
BalI TGGCCA 2 cut(s) 1360, 2055
BanII GRGCYC 2 cut(s) 185, 2098
BauI CACGAG 1 cut(s) 1815
BbsI GAAGAC 1 cut(s) 273
Bbv12I GWGCWC 4 cut(s) 185, 393, 1001, 1021
BbvCI CCTCAGC 1 cut(s) 903
BbvI GCAGC 8 cut(s) 304, 802, 934, 1090, 1192, 1821, 1975, 2052
BccI CCATC 7 cut(s) 188, 695, 1127, 1177, 1636, 2045, 2067
BceAI ACGGC 1 cut(s) 1844
BciT130I CCWGG 5 cut(s) 272, 645, 1440, 1484, 2092
BclI TGATCA 2 cut(s) 652, 1677
BcnI CCSGG 1 cut(s) 1392
BcoDI GTCTC 7 cut(s) 528, 1381, 1382, 1463, 1628, 1653, 1910
BcuI ACTAGT 1 cut(s) 985
BfaI CTAG 7 cut(s) 159, 260, 986, 1139, 1298, 1973, 2119
BfmI CTRYAG 1 cut(s) 1452
BfrI CTTAAG 1 cut(s) 236
BfuAI ACCTGC 2 cut(s) 293, 1924
BlpI GCTNAGC 1 cut(s) 61
BmcAI AGTACT 2 cut(s) 172, 670
Bme1390I CCNGG 6 cut(s) 272, 645, 1392, 1440, 1484, 2092
Bme18I GGWCC 3 cut(s) 151, 355, 1397
BmeRI GACNNNNNGTC 1 cut(s) 1476
BmgT120I GGNCC 4 cut(s) 151, 307, 355, 1397
BmiI GGNNCC 4 cut(s) 101, 357, 629, 1159
BmrFI CCNGG 6 cut(s) 272, 645, 1392, 1440, 1484, 2092
BmrI ACTGGG 2 cut(s) 481, 988
BmsI GCATC 4 cut(s) 523, 745, 1090, 2052
BmuI ACTGGG 2 cut(s) 481, 988
BpiI GAAGAC 1 cut(s) 273
BplI GAGNNNNNCTC 2 cut(s) 1102, 1134
BpmI CTGGAG 4 cut(s) 293, 597, 641, 1176
Bpu10I CCTNAGC 2 cut(s) 903, 1404
Bpu1102I GCTNAGC 1 cut(s) 61
Bpu14I TTCGAA 1 cut(s) 1842
BpuEI CTTGAG 1 cut(s) 1049
BpuMI CCSGG 1 cut(s) 1392
BsaAI YACGTR 2 cut(s) 244, 428
BsaBI GATNNNNATC 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 1477
BsaI GGTCTC 1 cut(s) 1381
BsaJI CCNNGG 2 cut(s) 33, 2091
BsaWI WCCGGW 1 cut(s) 630
BsaXI ACNNNNNCTCC 4 cut(s) 189, 219, 1364, 1394
Bsc4I CCNNNNNNNGG 4 cut(s) 349, 773, 1439, 1561
Bse118I RCCGGY 2 cut(s) 630, 1611
Bse1I ACTGG 8 cut(s) 123, 128, 476, 624, 794, 983, 1806, 1899
Bse3DI GCAATG 1 cut(s) 1530
Bse8I GATNNNNATC 1 cut(s) 222
BseBI CCWGG 5 cut(s) 272, 645, 1440, 1484, 2092
BseDI CCNNGG 2 cut(s) 33, 2091
BseGI GGATG 5 cut(s) 760, 1138, 1244, 2067, 2078
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 4 cut(s) 349, 773, 1439, 1561
BseMI GCAATG 1 cut(s) 1530
BseMII CTCAG 8 cut(s) 75, 423, 552, 807, 894, 1488, 1550, 1905
BseNI ACTGG 8 cut(s) 123, 128, 476, 624, 794, 983, 1806, 1899
BseSI GKGCMC 2 cut(s) 393, 1021
BseXI GCAGC 8 cut(s) 304, 802, 934, 1090, 1192, 1821, 1975, 2052
BseYI CCCAGC 1 cut(s) 1952
BsgI GTGCAG 1 cut(s) 1767
Bsh1236I CGCG 1 cut(s) 955
BshFI GGCC 7 cut(s) 308, 661, 1137, 1360, 1805, 1912, 2055
BshTI ACCGGT 1 cut(s) 630
BsiHKAI GWGCWC 4 cut(s) 185, 393, 1001, 1021
BsiSI CCGG 4 cut(s) 631, 692, 1391, 1612
BslFI GGGAC 4 cut(s) 1496, 1738, 1877, 1905
BslI CCNNNNNNNGG 4 cut(s) 349, 773, 1439, 1561
BsmAI GTCTC 7 cut(s) 528, 1381, 1382, 1463, 1628, 1653, 1910
BsmBI CGTCTC 2 cut(s) 1382, 1463
BsmFI GGGAC 4 cut(s) 1496, 1738, 1877, 1905
BsmI GAATGC 2 cut(s) 571, 1081
BsnI GGCC 7 cut(s) 308, 661, 1137, 1360, 1805, 1912, 2055
Bso31I GGTCTC 1 cut(s) 1381
Bsp119I TTCGAA 1 cut(s) 1842
Bsp1286I GDGCHC 5 cut(s) 185, 393, 1001, 1021, 2098
Bsp143I GATC 6 cut(s) 481, 652, 722, 1112, 1564, 1677
Bsp1720I GCTNAGC 1 cut(s) 61
Bsp19I CCATGG 1 cut(s) 33
BspACI CCGC 3 cut(s) 821, 1130, 1831
BspANI GGCC 7 cut(s) 308, 661, 1137, 1360, 1805, 1912, 2055
BspCNI CTCAG 8 cut(s) 74, 422, 553, 808, 895, 1489, 1549, 1906
BspFNI CGCG 1 cut(s) 955
BspHI TCATGA 2 cut(s) 862, 1225
BspLI GGNNCC 4 cut(s) 101, 357, 629, 1159
BspMI ACCTGC 2 cut(s) 293, 1924
BspPI GGATC 3 cut(s) 476, 730, 1572
BspT104I TTCGAA 1 cut(s) 1842
BspTI CTTAAG 1 cut(s) 236
BspTNI GGTCTC 1 cut(s) 1381
BsrDI GCAATG 1 cut(s) 1530
BsrFI RCCGGY 2 cut(s) 630, 1611
BsrI ACTGG 8 cut(s) 123, 128, 476, 624, 794, 983, 1806, 1899
BssAI RCCGGY 2 cut(s) 630, 1611
BssECI CCNNGG 2 cut(s) 33, 2091
BssMI GATC 6 cut(s) 481, 652, 722, 1112, 1564, 1677
BssNI GRCGYC 1 cut(s) 1477
BssSI CACGAG 1 cut(s) 1815
BssT1I CCWWGG 1 cut(s) 33
Bst2BI CACGAG 1 cut(s) 1815
Bst2UI CCWGG 5 cut(s) 272, 645, 1440, 1484, 2092
Bst4CI ACNGT 8 cut(s) 205, 302, 1005, 1376, 1639, 1652, 1755, 1788
Bst6I CTCTTC 4 cut(s) 1461, 1775, 1985, 1994
BstACI GRCGYC 1 cut(s) 1477
BstAFI CTTAAG 1 cut(s) 236
BstBAI YACGTR 2 cut(s) 244, 428
BstBI TTCGAA 1 cut(s) 1842
BstC8I GCNNGC 3 cut(s) 595, 1033, 1147
BstDEI CTNAG 9 cut(s) 61, 409, 561, 816, 903, 1404, 1497, 1536, 1914
BstDSI CCRYGG 1 cut(s) 33
BstENI CCTNNNNNAGG 1 cut(s) 347
BstF5I GGATG 5 cut(s) 760, 1138, 1244, 2067, 2078
BstFNI CGCG 1 cut(s) 955
BstHHI GCGC 2 cut(s) 927, 955
BstKTI GATC 6 cut(s) 484, 655, 725, 1115, 1567, 1680
BstMAI GTCTC 7 cut(s) 528, 1381, 1382, 1463, 1628, 1653, 1910
BstMBI GATC 6 cut(s) 481, 652, 722, 1112, 1564, 1677
BstMWI GCNNNNNNNGC 5 cut(s) 314, 931, 1075, 1151, 1307
BstNI CCWGG 5 cut(s) 272, 645, 1440, 1484, 2092
BstNSI RCATGY 2 cut(s) 292, 1627
BstSCI CCNGG 6 cut(s) 270, 643, 1390, 1438, 1482, 2090
BstSFI CTRYAG 1 cut(s) 1452
BstSLI GKGCMC 2 cut(s) 393, 1021
BstSNI TACGTA 1 cut(s) 244
BstUI CGCG 1 cut(s) 955
BstV1I GCAGC 8 cut(s) 304, 802, 934, 1090, 1192, 1821, 1975, 2052
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 1 cut(s) 1564
BstYI RGATCY 1 cut(s) 1564
BsuRI GGCC 7 cut(s) 308, 661, 1137, 1360, 1805, 1912, 2055
BtgI CCRYGG 1 cut(s) 33
BtsCI GGATG 5 cut(s) 760, 1138, 1244, 2067, 2078
BtsI GCAGTG 1 cut(s) 1934
BtsIMutI CAGTG 6 cut(s) 662, 1001, 1644, 1784, 1813, 1934
BveI ACCTGC 2 cut(s) 293, 1924
Cac8I GCNNGC 3 cut(s) 595, 1033, 1147
CaiI CAGNNNCTG 2 cut(s) 536, 1208
CciI TCATGA 2 cut(s) 862, 1225
CfoI GCGC 2 cut(s) 927, 955
Cfr10I RCCGGY 2 cut(s) 630, 1611
Cfr13I GGNCC 4 cut(s) 151, 307, 355, 1397
CseI GACGC 1 cut(s) 1466
CsiI ACCWGGT 1 cut(s) 1438
Csp6I GTAC 4 cut(s) 171, 241, 669, 1522
CspAI ACCGGT 1 cut(s) 630
CviAII CATG 9 cut(s) 34, 56, 289, 854, 863, 1226, 1362, 1624, 1709
CviQI GTAC 4 cut(s) 171, 241, 669, 1522
DdeI CTNAG 9 cut(s) 61, 409, 561, 816, 903, 1404, 1497, 1536, 1914
DpnI GATC 6 cut(s) 483, 654, 724, 1114, 1566, 1679
DpnII GATC 6 cut(s) 481, 652, 722, 1112, 1564, 1677
DraIII CACNNNGTG 1 cut(s) 232
DriI GACNNNNNGTC 1 cut(s) 1476
EaeI YGGCCR 2 cut(s) 1358, 2053
Eam1104I CTCTTC 4 cut(s) 1461, 1775, 1985, 1994
Eam1105I GACNNNNNGTC 1 cut(s) 1476
EarI CTCTTC 4 cut(s) 1461, 1775, 1985, 1994
Ecl136II GAGCTC 1 cut(s) 183
Eco105I TACGTA 1 cut(s) 244
Eco130I CCWWGG 1 cut(s) 33
Eco147I AGGCCT 1 cut(s) 1912
Eco24I GRGCYC 2 cut(s) 185, 2098
Eco31I GGTCTC 1 cut(s) 1381
Eco32I GATATC 1 cut(s) 1200
Eco47I GGWCC 3 cut(s) 151, 355, 1397
Eco53kI GAGCTC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 471
EcoICRI GAGCTC 1 cut(s) 183
EcoNI CCTNNNNNAGG 1 cut(s) 347
EcoO109I RGGNCCY 1 cut(s) 355
EcoRII CCWGG 5 cut(s) 270, 643, 1438, 1482, 2090
EcoRV GATATC 1 cut(s) 1200
EcoT14I CCWWGG 1 cut(s) 33
EcoT38I GRGCYC 2 cut(s) 185, 2098
ErhI CCWWGG 1 cut(s) 33
Esp3I CGTCTC 2 cut(s) 1382, 1463
FaeI CATG 9 cut(s) 37, 59, 292, 857, 866, 1229, 1365, 1627, 1712
FalI AAGNNNNNCTT 2 cut(s) 160, 192
FaqI GGGAC 4 cut(s) 1496, 1738, 1877, 1905
FatI CATG 9 cut(s) 33, 55, 288, 853, 862, 1225, 1361, 1623, 1708
FauNDI CATATG 1 cut(s) 1345
FbaI TGATCA 2 cut(s) 652, 1677
FokI GGATG 5 cut(s) 767, 1145, 1231, 2074, 2085
FriOI GRGCYC 2 cut(s) 185, 2098
FspBI CTAG 7 cut(s) 159, 260, 986, 1139, 1298, 1973, 2119
GlaI GCGC 2 cut(s) 926, 954
GsaI CCCAGC 1 cut(s) 1956
GsuI CTGGAG 4 cut(s) 293, 597, 641, 1176
HaeIII GGCC 7 cut(s) 308, 661, 1137, 1360, 1805, 1912, 2055
HapII CCGG 4 cut(s) 631, 692, 1391, 1612
HgaI GACGC 1 cut(s) 1466
HhaI GCGC 2 cut(s) 927, 955
Hin1I GRCGYC 1 cut(s) 1477
Hin1II CATG 9 cut(s) 37, 59, 292, 857, 866, 1229, 1365, 1627, 1712
Hin6I GCGC 2 cut(s) 925, 953
HinP1I GCGC 2 cut(s) 925, 953
HincII GTYRAC 2 cut(s) 208, 1008
HindII GTYRAC 2 cut(s) 208, 1008
HindIII AAGCTT 2 cut(s) 397, 1406
HpaI GTTAAC 1 cut(s) 1008
HpaII CCGG 4 cut(s) 631, 692, 1391, 1612
HphI GGTGA 8 cut(s) 125, 218, 357, 1109, 1600, 1657, 1728, 2080
Hpy166II GTNNAC 8 cut(s) 133, 208, 391, 1008, 1019, 1058, 1397, 1648
Hpy8I GTNNAC 8 cut(s) 133, 208, 391, 1008, 1019, 1058, 1397, 1648
Hpy99I CGWCG 1 cut(s) 1482
HpyAV CCTTC 7 cut(s) 20, 372, 495, 614, 672, 767, 1750
HpyCH4III ACNGT 8 cut(s) 205, 302, 1005, 1376, 1639, 1652, 1755, 1788
HpyCH4IV ACGT 3 cut(s) 243, 427, 1323
HpyCH4V TGCA 9 cut(s) 288, 295, 391, 922, 1019, 1052, 1195, 1784, 2068
HpyF10VI GCNNNNNNNGC 5 cut(s) 314, 931, 1075, 1151, 1307
HpyF3I CTNAG 9 cut(s) 61, 409, 561, 816, 903, 1404, 1497, 1536, 1914
HpySE526I ACGT 3 cut(s) 243, 427, 1323
Hsp92I GRCGYC 1 cut(s) 1477
Hsp92II CATG 9 cut(s) 37, 59, 292, 857, 866, 1229, 1365, 1627, 1712
HspAI GCGC 2 cut(s) 925, 953
Ksp22I TGATCA 2 cut(s) 652, 1677
KspAI GTTAAC 1 cut(s) 1008
Kzo9I GATC 6 cut(s) 481, 652, 722, 1112, 1564, 1677
LmnI GCTCC 3 cut(s) 463, 1157, 1971
Lsp1109I GCAGC 8 cut(s) 304, 802, 934, 1090, 1192, 1821, 1975, 2052
LweI GCATC 4 cut(s) 523, 745, 1090, 2052
MabI ACCWGGT 1 cut(s) 1438
MaeI CTAG 7 cut(s) 159, 260, 986, 1139, 1298, 1973, 2119
MaeII ACGT 3 cut(s) 243, 427, 1323
MaeIII GTNAC 2 cut(s) 1237, 1747
MalI GATC 6 cut(s) 483, 654, 724, 1114, 1566, 1679
MboI GATC 6 cut(s) 481, 652, 722, 1112, 1564, 1677
MfeI CAATTG 2 cut(s) 1422, 1600
MflI RGATCY 1 cut(s) 1564
MhlI GDGCHC 5 cut(s) 185, 393, 1001, 1021, 2098
MlsI TGGCCA 2 cut(s) 1360, 2055
MluNI TGGCCA 2 cut(s) 1360, 2055
MlyI GAGTC 2 cut(s) 806, 881
MmeI TCCRAC 1 cut(s) 1471
Mox20I TGGCCA 2 cut(s) 1360, 2055
MscI TGGCCA 2 cut(s) 1360, 2055
MseI TTAA 9 cut(s) 45, 237, 345, 635, 1007, 1217, 1506, 1569, 1689
MslI CAYNNNNRTG 2 cut(s) 159, 680
Msp20I TGGCCA 2 cut(s) 1360, 2055
MspA1I CMGCKG 1 cut(s) 1205
MspCI CTTAAG 1 cut(s) 236
MspI CCGG 4 cut(s) 631, 692, 1391, 1612
MspR9I CCNGG 6 cut(s) 272, 645, 1392, 1440, 1484, 2092
MunI CAATTG 2 cut(s) 1422, 1600
Mva1269I GAATGC 2 cut(s) 571, 1081
MvaI CCWGG 5 cut(s) 272, 645, 1440, 1484, 2092
MvnI CGCG 1 cut(s) 955
MwoI GCNNNNNNNGC 5 cut(s) 314, 931, 1075, 1151, 1307
NciI CCSGG 1 cut(s) 1392
NcoI CCATGG 1 cut(s) 33
NdeI CATATG 1 cut(s) 1345
NdeII GATC 6 cut(s) 481, 652, 722, 1112, 1564, 1677
NlaIII CATG 9 cut(s) 37, 59, 292, 857, 866, 1229, 1365, 1627, 1712
NlaIV GGNNCC 4 cut(s) 101, 357, 629, 1159
NmuCI GTSAC 1 cut(s) 1747
NspI RCATGY 2 cut(s) 292, 1627
NspV TTCGAA 1 cut(s) 1842
OliI CACNNNNGTG 1 cut(s) 159
PagI TCATGA 2 cut(s) 862, 1225
PceI AGGCCT 1 cut(s) 1912
PctI GAATGC 2 cut(s) 571, 1081
PfeI GAWTC 8 cut(s) 85, 116, 164, 419, 551, 859, 890, 2085
PflFI GACNNNGTC 1 cut(s) 1664
PinAI ACCGGT 1 cut(s) 630
PleI GAGTC 2 cut(s) 806, 880
PpsI GAGTC 2 cut(s) 806, 880
Ppu21I YACGTR 2 cut(s) 244, 428
PpuMI RGGWCCY 1 cut(s) 355
PshBI ATTAAT 1 cut(s) 1689
Psp124BI GAGCTC 1 cut(s) 185
Psp5II RGGWCCY 1 cut(s) 355
Psp6I CCWGG 5 cut(s) 270, 643, 1438, 1482, 2090
PspFI CCCAGC 1 cut(s) 1952
PspGI CCWGG 5 cut(s) 270, 643, 1438, 1482, 2090
PspN4I GGNNCC 4 cut(s) 101, 357, 629, 1159
PspPI GGNCC 4 cut(s) 151, 307, 355, 1397
PspPPI RGGWCCY 1 cut(s) 355
PstNI CAGNNNCTG 2 cut(s) 536, 1208
PsuI RGATCY 1 cut(s) 1564
PsyI GACNNNGTC 1 cut(s) 1664
PvuII CAGCTG 1 cut(s) 1205
RsaI GTAC 4 cut(s) 172, 242, 670, 1523
RsaNI GTAC 4 cut(s) 171, 241, 669, 1522
RseI CAYNNNNRTG 2 cut(s) 159, 680
SacI GAGCTC 1 cut(s) 185
SaqAI TTAA 9 cut(s) 45, 237, 345, 635, 1007, 1217, 1506, 1569, 1689
Sau3AI GATC 6 cut(s) 481, 652, 722, 1112, 1564, 1677
Sau96I GGNCC 4 cut(s) 151, 307, 355, 1397
ScaI AGTACT 2 cut(s) 172, 670
SchI GAGTC 2 cut(s) 806, 881
ScrFI CCNGG 6 cut(s) 272, 645, 1392, 1440, 1484, 2092
SduI GDGCHC 5 cut(s) 185, 393, 1001, 1021, 2098
SexAI ACCWGGT 1 cut(s) 1438
SfaNI GCATC 4 cut(s) 523, 745, 1090, 2052
SfcI CTRYAG 1 cut(s) 1452
SfuI TTCGAA 1 cut(s) 1842
SinI GGWCC 3 cut(s) 151, 355, 1397
SmiMI CAYNNNNRTG 2 cut(s) 159, 680
SmlI CTYRAG 2 cut(s) 236, 1064
SmoI CTYRAG 2 cut(s) 236, 1064
SnaBI TACGTA 1 cut(s) 244
SpeI ACTAGT 1 cut(s) 985
SseBI AGGCCT 1 cut(s) 1912
SsiI CCGC 3 cut(s) 821, 1130, 1831
SspMI CTAG 7 cut(s) 159, 260, 986, 1139, 1298, 1973, 2119
SstI GAGCTC 1 cut(s) 185
StuI AGGCCT 1 cut(s) 1912
StyD4I CCNGG 6 cut(s) 270, 643, 1390, 1438, 1482, 2090
StyI CCWWGG 1 cut(s) 33
TaaI ACNGT 8 cut(s) 205, 302, 1005, 1376, 1639, 1652, 1755, 1788
TaiI ACGT 3 cut(s) 246, 430, 1326
TaqI TCGA 1 cut(s) 1842
TatI WGTACW 3 cut(s) 170, 668, 1521
TauI GCSGC 2 cut(s) 823, 1834
TfiI GAWTC 8 cut(s) 85, 116, 164, 419, 551, 859, 890, 2085
Tru1I TTAA 9 cut(s) 45, 237, 345, 635, 1007, 1217, 1506, 1569, 1689
Tru9I TTAA 9 cut(s) 45, 237, 345, 635, 1007, 1217, 1506, 1569, 1689
TscAI CASTG 6 cut(s) 662, 1008, 1644, 1791, 1813, 1934
TseFI GTSAC 1 cut(s) 1747
TseI GCWGC 8 cut(s) 317, 790, 922, 1078, 1205, 1834, 1963, 2065
Tsp45I GTSAC 1 cut(s) 1747
TspDTI ATGAA 8 cut(s) 903, 1233, 1332, 1622, 1693, 1697, 1839, 2061
TspRI CASTG 6 cut(s) 662, 1008, 1644, 1791, 1813, 1934
Tth111I GACNNNGTC 1 cut(s) 1664
Vha464I CTTAAG 1 cut(s) 236
VneI GTGCAC 2 cut(s) 389, 1017
VpaK11BI GGWCC 3 cut(s) 151, 355, 1397
VspI ATTAAT 1 cut(s) 1689
XagI CCTNNNNNAGG 1 cut(s) 347
XbaI TCTAGA 1 cut(s) 259
XceI RCATGY 2 cut(s) 292, 1627
XcmI CCANNNNNNNNNTGG 1 cut(s) 468
XspI CTAG 7 cut(s) 159, 260, 986, 1139, 1298, 1973, 2119
ZrmI AGTACT 2 cut(s) 172, 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.