Rh5CG470600

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000175
Physical Location & Seq
Reverse (-)
65581892 .. 65588065
6174 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG470600.1

Sequence Viewer

Length: 1248 bp
ATGCCAACATCTCCAGATCAGAATATCATTTTTACTGAGTTTGATCAACACAATCTTGAAATTACTGATCCCAGTTCGTTTCTATCCAATCCAAACCCTCCTCCTCGTGATGTTTCATCCCGGTCTTTGGGTGTGACCTCAGAGGCCTCCAGAGCTACTCCCCAGTATATAAGTGAGATGCTTATGGAGGAAGAGCTGGAGAACAGACCCTGCATGCTTCAGGACTGTTTGGCCCTCCAAGCTGCTGAGAAATCCTTGGAAGATGTCCTGGTTCAGCAATATCCTCCTTCGACTAATCCCATTCTTGCTTCTTCCATTCAGCAAAATGTTGACAACTCTGATGATTTCATTAACCACAGCAGTAATAGCTCCACTGCTGCTAGAAACTGGGTTGATGGTTCAGGGGGAAGGGGACATGCAGGATCCAAAGGCAAAAGAACAGTTAAGAAAAAAAAGGATGACAACACTGAAGTAGTGGATTTTCAGTCACTGCTAACTCAGTGTGCAAAGGCAAGCTATGACAGAAGGACTGCAAATGAACAACTGAAACAGATAAGGCAGCACTCATCTCCCTACGGTGATGGAACCCAAAGAGTAGCTCATTACTTAGCCAATGGCCTTGAAGAACACTTGGCTGCTGCAGTTCCTTCGTTCAATCCTCTTTGCCTTAATAAGATGTCAGCTGCTGATATCTTAAAAGCTTACCAGACATATATCAAAGCATGCCCCTTCAAGTTGATGTCAAACATCTATGCTAACAAAACTATCTTCAAACTAACAGAGAAAGCAACAAGGCTTCACATAATTGATTTTGGTATTCTCTATGGCTACCAATGGCCTGGCCTTATCCAAAGTCTTGCTAAAAGACCCTCTGGACCTCCCATGCTTCGCATTACTGGTATTGAATTTCCACAATCAGGATTTCGACCTTCAGAGAGTCTTGAAGAGACAGGGCACCTCCTAGCGAAATATTGCAAGAGATTCAATGTCCCATTTGAGTACAACTTCATAGCACAGGATTGGGAAACCATTCGATATCAAGAGATCAAACTTGACAGAGATGAGTTTACTGTAGTGAACTGCTTGTGCAGATTAAGGAACGTACCTGAAGAAACAGAGATGAGGAGTCCAAGGGATAGAGTTTTGAAGCTGATCAGGAGAATCAACCCAGATATGTATATCCTTGGACTGGTTAATGGAACCTATAATGCACCCTTCTTCAACATACGGTTCCGGGAGGCACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

415

Amino Acids

47.06

Weight (kDa)

6.73

Isoelectric Point (pI)

61.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 162 - 415 8.7e-73 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 954
AclWI GGATC 3 cut(s) 62, 417, 430
AcsI RAATTY 1 cut(s) 905
AcuI CTGAAG 4 cut(s) 203, 489, 915, 1128
AfaI GTAC 2 cut(s) 1001, 1104
AfiI CCNNNNNNNGG 3 cut(s) 127, 917, 1189
AjnI CCWGG 2 cut(s) 267, 838
AluBI AGCT 9 cut(s) 155, 196, 242, 369, 516, 599, 683, 701, 1150
AluI AGCT 9 cut(s) 155, 196, 242, 369, 516, 599, 683, 701, 1150
Alw26I GTCTC 1 cut(s) 941
AlwI GGATC 3 cut(s) 62, 417, 430
AlwNI CAGNNNCTG 3 cut(s) 210, 490, 686
AoxI GGCC 5 cut(s) 144, 231, 616, 836, 841
ApeKI GCWGC 6 cut(s) 242, 377, 559, 635, 638, 683
ApoI RAATTY 1 cut(s) 905
Asp700I GAANNNNTTC 1 cut(s) 1029
AspS9I GGNCC 2 cut(s) 232, 875
AsuC2I CCSGG 2 cut(s) 121, 1235
AsuHPI GGTGA 1 cut(s) 590
AvaII GGWCC 1 cut(s) 875
BaeGI GKGCMC 1 cut(s) 957
BamHI GGATCC 1 cut(s) 422
BanI GGYRCC 1 cut(s) 954
BauI CACGAG 1 cut(s) 105
BbvI GCAGC 6 cut(s) 229, 364, 571, 622, 625, 670
BccI CCATC 2 cut(s) 389, 575
BcgI CGANNNNNNTGC 2 cut(s) 630, 664
BciT130I CCWGG 2 cut(s) 269, 840
BclI TGATCA 2 cut(s) 43, 1152
BcnI CCSGG 2 cut(s) 121, 1235
BcoDI GTCTC 1 cut(s) 941
BfaI CTAG 3 cut(s) 381, 962, 1246
BfmI CTRYAG 2 cut(s) 639, 1071
BisI GCNGC 6 cut(s) 243, 378, 560, 636, 639, 684
BlsI GCNGC 6 cut(s) 244, 379, 561, 637, 640, 685
Bme1390I CCNGG 4 cut(s) 121, 269, 840, 1235
Bme18I GGWCC 1 cut(s) 875
BmgT120I GGNCC 2 cut(s) 232, 875
BmiI GGNNCC 5 cut(s) 424, 586, 956, 1201, 1232
BmrFI CCNGG 4 cut(s) 121, 269, 840, 1235
BmrI ACTGGG 3 cut(s) 66, 157, 397
BmsI GCATC 1 cut(s) 168
BmuI ACTGGG 3 cut(s) 66, 157, 397
BpmI CTGGAG 2 cut(s) 133, 218
BpuMI CCSGG 2 cut(s) 121, 1235
BsaJI CCNNGG 3 cut(s) 255, 1130, 1183
Bsc4I CCNNNNNNNGG 3 cut(s) 127, 917, 1189
Bse1I ACTGG 5 cut(s) 72, 163, 392, 901, 1194
BseBI CCWGG 2 cut(s) 269, 840
BseDI CCNNGG 3 cut(s) 255, 1130, 1183
BseGI GGATG 2 cut(s) 116, 463
BseLI CCNNNNNNNGG 3 cut(s) 127, 917, 1189
BseMII CTCAG 4 cut(s) 27, 153, 237, 512
BseNI ACTGG 5 cut(s) 72, 163, 392, 901, 1194
BseRI GAGGAG 3 cut(s) 90, 93, 1138
BseSI GKGCMC 1 cut(s) 957
BseXI GCAGC 6 cut(s) 229, 364, 571, 622, 625, 670
BsgI GTGCAG 1 cut(s) 1108
BshFI GGCC 5 cut(s) 146, 233, 618, 838, 843
BshNI GGYRCC 1 cut(s) 954
BsiSI CCGG 2 cut(s) 121, 1234
BslFI GGGAC 2 cut(s) 426, 974
BslI CCNNNNNNNGG 3 cut(s) 127, 917, 1189
BsmAI GTCTC 1 cut(s) 941
BsmFI GGGAC 2 cut(s) 426, 974
BsnI GGCC 5 cut(s) 146, 233, 618, 838, 843
Bsp1286I GDGCHC 1 cut(s) 957
Bsp143I GATC 6 cut(s) 16, 43, 67, 422, 1044, 1152
BspANI GGCC 5 cut(s) 146, 233, 618, 838, 843
BspCNI CTCAG 4 cut(s) 28, 152, 238, 511
BspLI GGNNCC 5 cut(s) 424, 586, 956, 1201, 1232
BspMAI CTGCAG 1 cut(s) 643
BspPI GGATC 3 cut(s) 62, 417, 430
BspQI GCTCTTC 1 cut(s) 186
BspT107I GGYRCC 1 cut(s) 954
BsrI ACTGG 5 cut(s) 72, 163, 392, 901, 1194
BssECI CCNNGG 3 cut(s) 255, 1130, 1183
BssMI GATC 6 cut(s) 16, 43, 67, 422, 1044, 1152
BssSI CACGAG 1 cut(s) 105
BssT1I CCWWGG 3 cut(s) 255, 1130, 1183
Bst2BI CACGAG 1 cut(s) 105
Bst2UI CCWGG 2 cut(s) 269, 840
Bst4CI ACNGT 5 cut(s) 227, 442, 578, 1072, 1230
Bst6I CTCTTC 2 cut(s) 186, 939
BstC8I GCNNGC 3 cut(s) 215, 514, 724
BstDEI CTNAG 5 cut(s) 36, 139, 246, 498, 607
BstF5I GGATG 2 cut(s) 116, 463
BstKTI GATC 6 cut(s) 19, 46, 70, 425, 1047, 1155
BstMAI GTCTC 1 cut(s) 941
BstMBI GATC 6 cut(s) 16, 43, 67, 422, 1044, 1152
BstMWI GCNNNNNNNGC 3 cut(s) 152, 239, 366
BstNI CCWGG 2 cut(s) 269, 840
BstNSI RCATGY 3 cut(s) 217, 419, 726
BstSCI CCNGG 4 cut(s) 119, 267, 838, 1233
BstSFI CTRYAG 2 cut(s) 639, 1071
BstSLI GKGCMC 1 cut(s) 957
BstV1I GCAGC 6 cut(s) 229, 364, 571, 622, 625, 670
BstX2I RGATCY 1 cut(s) 422
BstXI CCANNNNNNTGG 1 cut(s) 839
BstYI RGATCY 1 cut(s) 422
BsuRI GGCC 5 cut(s) 146, 233, 618, 838, 843
BtsCI GGATG 2 cut(s) 116, 463
BtsI GCAGTG 2 cut(s) 372, 488
BtsIMutI CAGTG 4 cut(s) 372, 465, 488, 506
Cac8I GCNNGC 3 cut(s) 215, 514, 724
CaiI CAGNNNCTG 3 cut(s) 210, 490, 686
Cfr13I GGNCC 2 cut(s) 232, 875
Csp6I GTAC 2 cut(s) 1000, 1103
CviAII CATG 4 cut(s) 214, 416, 723, 883
CviQI GTAC 2 cut(s) 1000, 1103
DdeI CTNAG 5 cut(s) 36, 139, 246, 498, 607
DpnI GATC 6 cut(s) 18, 45, 69, 424, 1046, 1154
DpnII GATC 6 cut(s) 16, 43, 67, 422, 1044, 1152
Eam1104I CTCTTC 2 cut(s) 186, 939
EarI CTCTTC 2 cut(s) 186, 939
Eco130I CCWWGG 3 cut(s) 255, 1130, 1183
Eco147I AGGCCT 1 cut(s) 146
Eco32I GATATC 2 cut(s) 691, 1037
Eco47I GGWCC 1 cut(s) 875
Eco57I CTGAAG 4 cut(s) 203, 489, 915, 1128
EcoRII CCWGG 2 cut(s) 267, 838
EcoRV GATATC 2 cut(s) 691, 1037
EcoT14I CCWWGG 3 cut(s) 255, 1130, 1183
ErhI CCWWGG 3 cut(s) 255, 1130, 1183
FaeI CATG 4 cut(s) 217, 419, 726, 886
FaqI GGGAC 2 cut(s) 426, 974
FatI CATG 4 cut(s) 213, 415, 722, 882
FbaI TGATCA 2 cut(s) 43, 1152
Fnu4HI GCNGC 6 cut(s) 243, 378, 560, 636, 639, 684
FokI GGATG 2 cut(s) 103, 470
Fsp4HI GCNGC 6 cut(s) 243, 378, 560, 636, 639, 684
FspBI CTAG 3 cut(s) 381, 962, 1246
GluI GCNGC 6 cut(s) 243, 378, 560, 636, 639, 684
GsuI CTGGAG 2 cut(s) 133, 218
HaeIII GGCC 5 cut(s) 146, 233, 618, 838, 843
HapII CCGG 2 cut(s) 121, 1234
Hin1II CATG 4 cut(s) 217, 419, 726, 886
HincII GTYRAC 1 cut(s) 331
HindII GTYRAC 1 cut(s) 331
HindIII AAGCTT 1 cut(s) 699
HinfI GANTC 4 cut(s) 937, 981, 1126, 1161
HpaII CCGG 2 cut(s) 121, 1234
HphI GGTGA 1 cut(s) 590
Hpy166II GTNNAC 3 cut(s) 331, 1068, 1078
Hpy188I TCNGA 4 cut(s) 21, 142, 340, 934
Hpy8I GTNNAC 3 cut(s) 331, 1068, 1078
HpyAV CCTTC 7 cut(s) 297, 402, 519, 657, 739, 939, 1225
HpyCH4III ACNGT 5 cut(s) 227, 442, 578, 1072, 1230
HpyCH4IV ACGT 1 cut(s) 1101
HpyCH4V TGCA 8 cut(s) 213, 419, 506, 533, 641, 975, 1089, 1211
HpyF10VI GCNNNNNNNGC 3 cut(s) 152, 239, 366
HpyF3I CTNAG 5 cut(s) 36, 139, 246, 498, 607
HpySE526I ACGT 1 cut(s) 1101
Hsp92II CATG 4 cut(s) 217, 419, 726, 886
Ksp22I TGATCA 2 cut(s) 43, 1152
Kzo9I GATC 6 cut(s) 16, 43, 67, 422, 1044, 1152
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 1 cut(s) 374
Lsp1109I GCAGC 6 cut(s) 229, 364, 571, 622, 625, 670
LweI GCATC 1 cut(s) 168
MaeI CTAG 3 cut(s) 381, 962, 1246
MaeII ACGT 1 cut(s) 1101
MaeIII GTNAC 2 cut(s) 133, 486
MalI GATC 6 cut(s) 18, 45, 69, 424, 1046, 1154
MboI GATC 6 cut(s) 16, 43, 67, 422, 1044, 1152
MboII GAAGA 8 cut(s) 203, 272, 303, 635, 760, 956, 1121, 1210
MflI RGATCY 1 cut(s) 422
MhlI GDGCHC 1 cut(s) 957
MluCI AATT 3 cut(s) 60, 804, 905
MlyI GAGTC 2 cut(s) 946, 1135
MroXI GAANNNNTTC 1 cut(s) 1029
MseI TTAA 6 cut(s) 351, 444, 669, 695, 1094, 1194
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 2 cut(s) 121, 1234
MspR9I CCNGG 4 cut(s) 121, 269, 840, 1235
MvaI CCWGG 2 cut(s) 269, 840
MwoI GCNNNNNNNGC 3 cut(s) 152, 239, 366
NciI CCSGG 2 cut(s) 121, 1235
NdeII GATC 6 cut(s) 16, 43, 67, 422, 1044, 1152
NlaIII CATG 4 cut(s) 217, 419, 726, 886
NlaIV GGNNCC 5 cut(s) 424, 586, 956, 1201, 1232
NmuCI GTSAC 2 cut(s) 133, 486
NspI RCATGY 3 cut(s) 217, 419, 726
PaeI GCATGC 2 cut(s) 217, 726
PceI AGGCCT 1 cut(s) 146
PciSI GCTCTTC 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 1029
PfeI GAWTC 2 cut(s) 981, 1161
PfoI TCCNGGA 1 cut(s) 1233
PkrI GCNGC 6 cut(s) 244, 379, 561, 637, 640, 685
PleI GAGTC 2 cut(s) 945, 1134
PpsI GAGTC 2 cut(s) 945, 1134
Psp6I CCWGG 2 cut(s) 267, 838
PspGI CCWGG 2 cut(s) 267, 838
PspN4I GGNNCC 5 cut(s) 424, 586, 956, 1201, 1232
PspPI GGNCC 2 cut(s) 232, 875
PstI CTGCAG 1 cut(s) 643
PstNI CAGNNNCTG 3 cut(s) 210, 490, 686
PsuI RGATCY 1 cut(s) 422
PvuII CAGCTG 1 cut(s) 683
RsaI GTAC 2 cut(s) 1001, 1104
RsaNI GTAC 2 cut(s) 1000, 1103
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 6 cut(s) 351, 444, 669, 695, 1094, 1194
SatI GCNGC 6 cut(s) 243, 378, 560, 636, 639, 684
Sau3AI GATC 6 cut(s) 16, 43, 67, 422, 1044, 1152
Sau96I GGNCC 2 cut(s) 232, 875
SchI GAGTC 2 cut(s) 946, 1135
ScrFI CCNGG 4 cut(s) 121, 269, 840, 1235
SduI GDGCHC 1 cut(s) 957
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 2 cut(s) 639, 1071
SinI GGWCC 1 cut(s) 875
SphI GCATGC 2 cut(s) 217, 726
Sse9I AATT 3 cut(s) 60, 804, 905
SseBI AGGCCT 1 cut(s) 146
SspI AATATT 1 cut(s) 971
SspMI CTAG 3 cut(s) 381, 962, 1246
StuI AGGCCT 1 cut(s) 146
StyD4I CCNGG 4 cut(s) 119, 267, 838, 1233
StyI CCWWGG 3 cut(s) 255, 1130, 1183
TaaI ACNGT 5 cut(s) 227, 442, 578, 1072, 1230
TaiI ACGT 1 cut(s) 1104
TaqI TCGA 3 cut(s) 290, 925, 1033
TasI AATT 3 cut(s) 60, 804, 905
TatI WGTACW 1 cut(s) 999
TfiI GAWTC 2 cut(s) 981, 1161
Tru1I TTAA 6 cut(s) 351, 444, 669, 695, 1094, 1194
Tru9I TTAA 6 cut(s) 351, 444, 669, 695, 1094, 1194
TscAI CASTG 4 cut(s) 379, 472, 495, 506
TseFI GTSAC 2 cut(s) 133, 486
TseI GCWGC 6 cut(s) 242, 377, 559, 635, 638, 683
Tsp45I GTSAC 2 cut(s) 133, 486
TspDTI ATGAA 4 cut(s) 105, 337, 552, 997
TspRI CASTG 4 cut(s) 379, 472, 495, 506
VpaK11BI GGWCC 1 cut(s) 875
XapI RAATTY 1 cut(s) 905
XceI RCATGY 3 cut(s) 217, 419, 726
XmnI GAANNNNTTC 1 cut(s) 1029
XspI CTAG 3 cut(s) 381, 962, 1246
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.