Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000175

Physical Location & Seq

Genomic Coordinates Reverse (-)

8127739 .. 8129778

Gene Structure 2040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1098000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2040 bp

ATGGATACCCTTTTTGAAAGATCATCAAGTCCCATGCAGAACTTCCAATTTGGTTCTACTCAATTCCAAGTGAATCATGAACCCACCAATCCACTTTTCCTTCCAACAACCCCTGAGCATCCAACTGATTCCGGGTGTTCGAACCCGGGATCAGATGGAGATTCTTTTGACATGAGTGACTGTAATCATTCGGTGATCAAGTACATAAGTGATATTCTTCTGGAAGAAGATTTGGAGGATCAGCCTTGCATGTTGCAGAACTGTTTGGCCCTCCAAGCTGCTGAGAAATCTTTCTATGATGTCCTTAATCCGAAGGATCCTCCTTCGCCTGACCAACCGCCTCTTCCGGTGTACCAAAGCTTTGAGCACTCAGATGATGATTCCTCACAGAGTTATAGCAGTAATGATTCTGTGGCTGCTAAGACAGACTCGGTTTTCGATTCTTCAGAAACCCTTTTGGTTTCAAACTCAACTTCTGGGAATTTTGGAGGAGTTGGGGAGGCAGGAAATCTCGTTCCAAACCTGAAACATGGAATTATTGACTTGGAGAGGTACCAATTAGTTCCCCCGGGCGATAACACACTGAGGAGGAATTCCGCACCGGAGCCAGAGAATGATGGCTACATCTCAGCAAACAGATTGAAGGGAAAGAAGAATCATCAAAGGGAGGATGGTGATTATGAAGATGGAGGGAGAAGCAACAAGCAGTCAGCTGCTTTAGGCGACGACACTGAGCCACAAGAAATGTTTGATAGGGTATTACTCTGTCATGTGAATCATACGCATGGGTCTTGTATTCGTGACAAACCTTTGAGCAGTGAGGGAAGTGAGAAGTTGCAGCCTAACAAGCAGTCAAAAGGGTCTAAAACAACACGCTTGAAGAAACAGAATAACTACCGGGAAGTTGTGGATATTAGCACCCTGCTAACTCAATGTGCACAGGCCACGGCAAGCTATGACCAACGAAGTGCGAGTGAACTACTGAAGCAGATAAGGAAGCACTCTTCCCCCTATGGTGATGCAACCGAGAGATTAGCTCATTACTTTGCTGATGGCCTAGAGGCGCGCTTGGTGGGAGCCAGAACCCCATCGTATTCACCTCTTCTGAGTATACAGATACCAGCCGCTGAAATCTTAAAAGCCCACCAGATGTATGTTAATTATTGCCCTTTCAAGCATATGTTACACTTCTTTTCCAACAGGACAATTATTAAACTAGCTGAAAAAGCAACAAGGCTTCACATTGTTGATTTCGGTATTTCGTATGGTTTCCAATGGCCTTGCCTTATCCAACGCCTCTCGGAGAGAAATGGTGGACCTCCTAGCATACGTTTGACAGCAATTGAGCTTCCCCAACCTGGTTTTCGACCTACAGAAAGAGTTGACGAGACGGGGCGTCGCTTGAAAAAATATGCTGCAAGATTTAATGTCCAGTTTGAGTACAGGGTCTTCGCACAGAAATGGGAGACCATCCAACTTGAGGATCTTAAAATTGACAGAAATGAGCTAACTGTGGTTAACTGCATGCATCGGTTAAAGCACATACCTGATGAAACCGTGGTGGTGAGCAGTCCGAGGGACCTTGTCCTAAAGTTGATCAGAAGAATTAATCCGGACCTTTTCATTCACGGAGTTGTCAACGGGACATACAATTCACCCTTCTTTGTCACACGGTTCAAAGAGGCACTCTACCACTTCTCTGCAATGTTTGACATGTTTGAGGCCACTATTCCTCGCGAAGATGAGCAGCGGATGATGTTTGAAAAGGCAATATATGGTAAAGACATAATGAATGTCGTCGCGTGTGAAGGACTGGAACGAGTTGAAAGGCCTGAGACATACAAGCAGTGGCAGGTTAGATATCATCGGGCTGGGTTCAAGCAGGTGCCGTTAGACCAGGAGCTCTTGAAAAGAGTGAAGATTATGCTGAAGGCAATGCATTATCATGATGATTTTCTAGTAGATGAAGATGGCGAGTGGATGCTTCAGGGATGGAAAGGCAAAACCATCTTCGGTCTTGCTTTCTGGAAACCTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

680

Amino Acids

77.29

Weight (kDa)

5.91

Isoelectric Point (pI)

46.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	307 - 677	7.6e-120	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca	FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica	MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica	Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis	pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis	RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata	RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora	Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa	Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha	Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana	Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1873
Acc36I	ACCTGC	2 cut(s)	1843, 1873
Acc65I	GGTACC	1 cut(s)	552
AccB1I	GGYRCC	2 cut(s)	552, 1885
AccI	GTMKAC	1 cut(s)	1111
AccII	CGCG	3 cut(s)	1066, 1737, 1802
AccIII	TCCGGA	1 cut(s)	1612
AciI	CCGC	4 cut(s)	338, 597, 1125, 1750
AclWI	GGATC	5 cut(s)	157, 246, 311, 324, 1491
AcsI	RAATTY	2 cut(s)	481, 592
AcuI	CTGAAG	4 cut(s)	429, 1004, 1949, 1970
AcyI	GRCGYC	1 cut(s)	1396
AfaI	GTAC	4 cut(s)	203, 353, 554, 1442
AfiI	CCNNNNNNNGG	2 cut(s)	1358, 1480
AflIII	ACRYGT	1 cut(s)	1713
AhdI	GACNNNNNGTC	1 cut(s)	1395
AjnI	CCWGG	2 cut(s)	1357, 1896
AjuI	GAANNNNNNNTTGG	6 cut(s)	80, 112, 327, 359, 1347, 1379
AloI	GAACNNNNNNTCC	2 cut(s)	498, 530
AluBI	AGCT	9 cut(s)	278, 360, 713, 954, 1037, 1220, 1348, 1507, 1903
AluI	AGCT	9 cut(s)	278, 360, 713, 954, 1037, 1220, 1348, 1507, 1903
Alw21I	GWGCWC	3 cut(s)	369, 940, 1905
Alw26I	GTCTC	3 cut(s)	1382, 1460, 1829
Alw44I	GTGCAC	1 cut(s)	936
AlwI	GGATC	5 cut(s)	157, 246, 311, 324, 1491
AlwNI	CAGNNNCTG	1 cut(s)	1127
Ama87I	CYCGRG	2 cut(s)	145, 568
Aor13HI	TCCGGA	1 cut(s)	1612
AoxI	GGCC	6 cut(s)	267, 942, 1054, 1277, 1722, 1829
ApaLI	GTGCAC	1 cut(s)	936
ApeKI	GCWGC	6 cut(s)	278, 416, 713, 838, 1415, 1747
ApoI	RAATTY	2 cut(s)	481, 592
ArsI	GACNNNNNNTTYG	2 cut(s)	419, 451
AseI	ATTAAT	1 cut(s)	1608
Asp700I	GAANNNNTTC	1 cut(s)	290
Asp718I	GGTACC	1 cut(s)	552
AspLEI	GCGC	2 cut(s)	1066, 1068
AspS9I	GGNCC	4 cut(s)	268, 1316, 1579, 1615
AsuC2I	CCSGG	6 cut(s)	133, 146, 147, 569, 570, 899
AsuHPI	GGTGA	6 cut(s)	205, 686, 1028, 1089, 1576, 1647
AsuII	TTCGAA	1 cut(s)	140
AvaI	CYCGRG	2 cut(s)	145, 568
AvaII	GGWCC	3 cut(s)	1316, 1579, 1615
BaeGI	GKGCMC	1 cut(s)	940
BamHI	GGATCC	1 cut(s)	316
BanI	GGYRCC	2 cut(s)	552, 1885
BanII	GRGCYC	1 cut(s)	1905
BarI	GAAGNNNNNNTAC	2 cut(s)	1433, 1465
BbsI	GAAGAC	1 cut(s)	1441
Bbv12I	GWGCWC	3 cut(s)	369, 940, 1905
BbvI	GCAGC	6 cut(s)	265, 403, 700, 850, 1402, 1759
BceAI	ACGGC	2 cut(s)	963, 1873
BciT130I	CCWGG	2 cut(s)	1359, 1898
BclI	TGATCA	2 cut(s)	195, 1596
BcnI	CCSGG	6 cut(s)	133, 146, 147, 569, 570, 899
BcoDI	GTCTC	3 cut(s)	1382, 1460, 1829
BfaI	CTAG	4 cut(s)	1058, 1217, 1323, 1958
BfmI	CTRYAG	1 cut(s)	1371
BfuAI	ACCTGC	2 cut(s)	1843, 1873
BisI	GCNGC	7 cut(s)	279, 417, 714, 839, 1125, 1416, 1748
BlsI	GCNGC	7 cut(s)	280, 418, 715, 840, 1126, 1417, 1749
Bme1390I	CCNGG	8 cut(s)	133, 146, 147, 569, 570, 899, 1359, 1898
Bme18I	GGWCC	3 cut(s)	1316, 1579, 1615
BmeRI	GACNNNNNGTC	1 cut(s)	1395
BmeT110I	CYCGRG	2 cut(s)	145, 568
BmgT120I	GGNCC	4 cut(s)	268, 1316, 1579, 1615
BmiI	GGNNCC	6 cut(s)	318, 554, 606, 1078, 1580, 1887
BmrFI	CCNGG	8 cut(s)	133, 146, 147, 569, 570, 899, 1359, 1898
BmsI	GCATC	4 cut(s)	127, 1009, 1537, 1971
BpiI	GAAGAC	1 cut(s)	1441
BplI	GAGNNNNNCTC	2 cut(s)	1021, 1053
Bpu10I	CCTNAGC	1 cut(s)	114
Bpu14I	TTCGAA	1 cut(s)	140
BpuEI	CTTGAG	1 cut(s)	1499
BpuMI	CCSGG	6 cut(s)	133, 146, 147, 569, 570, 899
BsaHI	GRCGYC	1 cut(s)	1396
BsaI	GGTCTC	1 cut(s)	1460
BsaJI	CCNNGG	6 cut(s)	145, 567, 568, 945, 1557, 1574
BsaWI	WCCGGW	3 cut(s)	346, 601, 1612
Bsc4I	CCNNNNNNNGG	2 cut(s)	1358, 1480
Bse1I	ACTGG	2 cut(s)	1432, 1818
Bse3DI	GCAATG	2 cut(s)	1710, 1941
BseAI	TCCGGA	1 cut(s)	1612
BseBI	CCWGG	2 cut(s)	1359, 1898
BseDI	CCNNGG	6 cut(s)	145, 567, 568, 945, 1557, 1574
BseGI	GGATG	6 cut(s)	118, 676, 1470, 1758, 1986, 1997
BseLI	CCNNNNNNNGG	2 cut(s)	1358, 1480
BseMI	GCAATG	2 cut(s)	1710, 1941
BseMII	CTCAG	8 cut(s)	105, 273, 384, 575, 642, 723, 1097, 1824
BseNI	ACTGG	2 cut(s)	1432, 1818
BsePI	GCGCGC	1 cut(s)	1064
BseRI	GAGGAG	2 cut(s)	504, 601
BseSI	GKGCMC	1 cut(s)	940
BseXI	GCAGC	6 cut(s)	265, 403, 700, 850, 1402, 1759
BseYI	CCCAGC	1 cut(s)	1871
Bsh1236I	CGCG	3 cut(s)	1066, 1737, 1802
BshFI	GGCC	6 cut(s)	269, 944, 1056, 1279, 1724, 1831
BshNI	GGYRCC	2 cut(s)	552, 1885
BsiHKAI	GWGCWC	3 cut(s)	369, 940, 1905
BsiHKCI	CYCGRG	2 cut(s)	145, 568
BsiSI	CCGG	7 cut(s)	132, 146, 347, 569, 602, 898, 1613
BslFI	GGGAC	3 cut(s)	15, 1592, 1657
BslI	CCNNNNNNNGG	2 cut(s)	1358, 1480
BsmAI	GTCTC	3 cut(s)	1382, 1460, 1829
BsmBI	CGTCTC	1 cut(s)	1382
BsmFI	GGGAC	3 cut(s)	15, 1592, 1657
BsnI	GGCC	6 cut(s)	269, 944, 1056, 1279, 1724, 1831
Bso31I	GGTCTC	1 cut(s)	1460
BsoBI	CYCGRG	2 cut(s)	145, 568
Bsp119I	TTCGAA	1 cut(s)	140
Bsp1286I	GDGCHC	3 cut(s)	369, 940, 1905
Bsp13I	TCCGGA	1 cut(s)	1612
Bsp143I	GATC	7 cut(s)	20, 149, 195, 238, 316, 1483, 1596
Bsp68I	TCGCGA	1 cut(s)	1737
BspACI	CCGC	4 cut(s)	338, 597, 1125, 1750
BspANI	GGCC	6 cut(s)	269, 944, 1056, 1279, 1724, 1831
BspCNI	CTCAG	8 cut(s)	106, 274, 383, 576, 641, 724, 1098, 1825
BspEI	TCCGGA	1 cut(s)	1612
BspFNI	CGCG	3 cut(s)	1066, 1737, 1802
BspHI	TCATGA	2 cut(s)	76, 1945
BspLI	GGNNCC	6 cut(s)	318, 554, 606, 1078, 1580, 1887
BspMI	ACCTGC	2 cut(s)	1843, 1873
BspPI	GGATC	5 cut(s)	157, 246, 311, 324, 1491
BspT104I	TTCGAA	1 cut(s)	140
BspT107I	GGYRCC	2 cut(s)	552, 1885
BspTNI	GGTCTC	1 cut(s)	1460
BsrDI	GCAATG	2 cut(s)	1710, 1941
BsrI	ACTGG	2 cut(s)	1432, 1818
BssECI	CCNNGG	6 cut(s)	145, 567, 568, 945, 1557, 1574
BssHII	GCGCGC	1 cut(s)	1064
BssMI	GATC	7 cut(s)	20, 149, 195, 238, 316, 1483, 1596
BssNAI	GTATAC	1 cut(s)	1112
BssNI	GRCGYC	1 cut(s)	1396
Bst1107I	GTATAC	1 cut(s)	1112
Bst2UI	CCWGG	2 cut(s)	1359, 1898
Bst4CI	ACNGT	5 cut(s)	182, 263, 1513, 1558, 1674
Bst6I	CTCTTC	3 cut(s)	348, 1009, 1107
BstACI	GRCGYC	1 cut(s)	1396
BstBI	TTCGAA	1 cut(s)	140
BstC8I	GCNNGC	3 cut(s)	952, 1066, 1526
BstDSI	CCRYGG	2 cut(s)	945, 1557
BstF5I	GGATG	6 cut(s)	118, 676, 1470, 1758, 1986, 1997
BstFNI	CGCG	3 cut(s)	1066, 1737, 1802
BstHHI	GCGC	2 cut(s)	1066, 1068
BstKTI	GATC	7 cut(s)	23, 152, 198, 241, 319, 1486, 1599
BstMAI	GTCTC	3 cut(s)	1382, 1460, 1829
BstMBI	GATC	7 cut(s)	20, 149, 195, 238, 316, 1483, 1596
BstMWI	GCNNNNNNNGC	3 cut(s)	275, 847, 1226
BstNI	CCWGG	2 cut(s)	1359, 1898
BstNSI	RCATGY	3 cut(s)	253, 1528, 1717
BstSCI	CCNGG	8 cut(s)	131, 144, 145, 567, 568, 897, 1357, 1896
BstSFI	CTRYAG	1 cut(s)	1371
BstSLI	GKGCMC	1 cut(s)	940
BstUI	CGCG	3 cut(s)	1066, 1737, 1802
BstV1I	GCAGC	6 cut(s)	265, 403, 700, 850, 1402, 1759
BstV2I	GAAGAC	1 cut(s)	1441
BstX2I	RGATCY	2 cut(s)	316, 1483
BstYI	RGATCY	2 cut(s)	316, 1483
BstZ17I	GTATAC	1 cut(s)	1112
BsuRI	GGCC	6 cut(s)	269, 944, 1056, 1279, 1724, 1831
BtgI	CCRYGG	2 cut(s)	945, 1557
BtsCI	GGATG	6 cut(s)	118, 676, 1470, 1758, 1986, 1997
BtsI	GCAGTG	2 cut(s)	823, 1853
BtsIMutI	CAGTG	4 cut(s)	581, 729, 823, 1853
BtuMI	TCGCGA	1 cut(s)	1737
BveI	ACCTGC	2 cut(s)	1843, 1873
Cac8I	GCNNGC	3 cut(s)	952, 1066, 1526
CaiI	CAGNNNCTG	1 cut(s)	1127
CciI	TCATGA	2 cut(s)	76, 1945
CfoI	GCGC	2 cut(s)	1066, 1068
Cfr13I	GGNCC	4 cut(s)	268, 1316, 1579, 1615
Cfr9I	CCCGGG	2 cut(s)	145, 568
CseI	GACGC	1 cut(s)	1385
CsiI	ACCWGGT	1 cut(s)	1357
Csp6I	GTAC	4 cut(s)	202, 352, 553, 1441
CviQI	GTAC	4 cut(s)	202, 352, 553, 1441
DpnI	GATC	7 cut(s)	22, 151, 197, 240, 318, 1485, 1598
DpnII	GATC	7 cut(s)	20, 149, 195, 238, 316, 1483, 1596
DriI	GACNNNNNGTC	1 cut(s)	1395
Eam1104I	CTCTTC	3 cut(s)	348, 1009, 1107
Eam1105I	GACNNNNNGTC	1 cut(s)	1395
EarI	CTCTTC	3 cut(s)	348, 1009, 1107
Ecl136II	GAGCTC	1 cut(s)	1903
Eco147I	AGGCCT	1 cut(s)	1831
Eco24I	GRGCYC	1 cut(s)	1905
Eco31I	GGTCTC	1 cut(s)	1460
Eco32I	GATATC	1 cut(s)	1862
Eco47I	GGWCC	3 cut(s)	1316, 1579, 1615
Eco53kI	GAGCTC	1 cut(s)	1903
Eco57I	CTGAAG	4 cut(s)	429, 1004, 1949, 1970
Eco88I	CYCGRG	2 cut(s)	145, 568
EcoICRI	GAGCTC	1 cut(s)	1903
EcoO109I	RGGNCCY	1 cut(s)	1579
EcoRI	GAATTC	1 cut(s)	592
EcoRII	CCWGG	2 cut(s)	1357, 1896
EcoRV	GATATC	1 cut(s)	1862
EcoT22I	ATGCAT	2 cut(s)	1530, 1941
EcoT38I	GRGCYC	1 cut(s)	1905
Esp3I	CGTCTC	1 cut(s)	1382
FaqI	GGGAC	3 cut(s)	15, 1592, 1657
FauNDI	CATATG	1 cut(s)	1179
FbaI	TGATCA	2 cut(s)	195, 1596
FblI	GTMKAC	1 cut(s)	1111
Fnu4HI	GCNGC	7 cut(s)	279, 417, 714, 839, 1125, 1416, 1748
FokI	GGATG	6 cut(s)	105, 683, 1457, 1765, 1993, 2004
FriOI	GRGCYC	1 cut(s)	1905
Fsp4HI	GCNGC	7 cut(s)	279, 417, 714, 839, 1125, 1416, 1748
FspBI	CTAG	4 cut(s)	1058, 1217, 1323, 1958
GlaI	GCGC	2 cut(s)	1065, 1067
GluI	GCNGC	7 cut(s)	279, 417, 714, 839, 1125, 1416, 1748
GsaI	CCCAGC	1 cut(s)	1875
HaeIII	GGCC	6 cut(s)	269, 944, 1056, 1279, 1724, 1831
HapII	CCGG	7 cut(s)	132, 146, 347, 569, 602, 898, 1613
HgaI	GACGC	1 cut(s)	1385
HhaI	GCGC	2 cut(s)	1066, 1068
Hin1I	GRCGYC	1 cut(s)	1396
Hin6I	GCGC	2 cut(s)	1064, 1066
HinP1I	GCGC	2 cut(s)	1064, 1066
HincII	GTYRAC	3 cut(s)	1384, 1519, 1639
HindII	GTYRAC	3 cut(s)	1384, 1519, 1639
HindIII	AAGCTT	1 cut(s)	358
HinfI	GANTC	9 cut(s)	73, 128, 161, 380, 407, 428, 440, 655, 775
HpaI	GTTAAC	1 cut(s)	1519
HpaII	CCGG	7 cut(s)	132, 146, 347, 569, 602, 898, 1613
HphI	GGTGA	6 cut(s)	205, 686, 1028, 1089, 1576, 1647
Hpy166II	GTNNAC	8 cut(s)	352, 938, 977, 1112, 1316, 1384, 1519, 1639
Hpy188I	TCNGA	8 cut(s)	154, 312, 373, 448, 1107, 1303, 1575, 1601
Hpy188III	TCNNGA	8 cut(s)	77, 221, 800, 1613, 1736, 1906, 1946, 2026
Hpy8I	GTNNAC	8 cut(s)	352, 938, 977, 1112, 1316, 1384, 1519, 1639
Hpy99I	CGWCG	3 cut(s)	728, 1401, 1802
HpyAV	CCTTC	7 cut(s)	110, 307, 333, 637, 1669, 1802, 1924
HpyCH4III	ACNGT	5 cut(s)	182, 263, 1513, 1558, 1674
HpyCH4IV	ACGT	1 cut(s)	1330
HpyF10VI	GCNNNNNNNGC	3 cut(s)	275, 847, 1226
HpySE526I	ACGT	1 cut(s)	1330
Hsp92I	GRCGYC	1 cut(s)	1396
HspAI	GCGC	2 cut(s)	1064, 1066
Kpn2I	TCCGGA	1 cut(s)	1612
KpnI	GGTACC	1 cut(s)	556
Ksp22I	TGATCA	2 cut(s)	195, 1596
KspAI	GTTAAC	1 cut(s)	1519
Kzo9I	GATC	7 cut(s)	20, 149, 195, 238, 316, 1483, 1596
LmnI	GCTCC	3 cut(s)	604, 1076, 1900
Lsp1109I	GCAGC	6 cut(s)	265, 403, 700, 850, 1402, 1759
LweI	GCATC	4 cut(s)	127, 1009, 1537, 1971
MabI	ACCWGGT	1 cut(s)	1357
MaeI	CTAG	4 cut(s)	1058, 1217, 1323, 1958
MaeII	ACGT	1 cut(s)	1330
MaeIII	GTNAC	4 cut(s)	176, 800, 1182, 1666
MalI	GATC	7 cut(s)	22, 151, 197, 240, 318, 1485, 1598
MboI	GATC	7 cut(s)	20, 149, 195, 238, 316, 1483, 1596
MfeI	CAATTG	1 cut(s)	1341
MflI	RGATCY	2 cut(s)	316, 1483
MhlI	GDGCHC	3 cut(s)	369, 940, 1905
MlyI	GAGTC	1 cut(s)	422
MmeI	TCCRAC	5 cut(s)	128, 146, 1221, 1315, 1498
Mph1103I	ATGCAT	2 cut(s)	1530, 1941
MroI	TCCGGA	1 cut(s)	1612
MroXI	GAANNNNTTC	1 cut(s)	290
MseI	TTAA	9 cut(s)	306, 1136, 1158, 1212, 1425, 1488, 1518, 1535, 1608
MslI	CAYNNNNRTG	4 cut(s)	372, 783, 1459, 1944
MspA1I	CMGCKG	3 cut(s)	713, 1127, 1750
MspI	CCGG	7 cut(s)	132, 146, 347, 569, 602, 898, 1613
MspR9I	CCNGG	8 cut(s)	133, 146, 147, 569, 570, 899, 1359, 1898
MunI	CAATTG	1 cut(s)	1341
MvaI	CCWGG	2 cut(s)	1359, 1898
MvnI	CGCG	3 cut(s)	1066, 1737, 1802
MwoI	GCNNNNNNNGC	3 cut(s)	275, 847, 1226
NciI	CCSGG	6 cut(s)	133, 146, 147, 569, 570, 899
NdeI	CATATG	1 cut(s)	1179
NdeII	GATC	7 cut(s)	20, 149, 195, 238, 316, 1483, 1596
NlaIV	GGNNCC	6 cut(s)	318, 554, 606, 1078, 1580, 1887
NmuCI	GTSAC	3 cut(s)	176, 800, 1666
NruI	TCGCGA	1 cut(s)	1737
NsiI	ATGCAT	2 cut(s)	1530, 1941
NspI	RCATGY	3 cut(s)	253, 1528, 1717
NspV	TTCGAA	1 cut(s)	140
PaeI	GCATGC	1 cut(s)	1528
PagI	TCATGA	2 cut(s)	76, 1945
PaqCI	CACCTGC	1 cut(s)	1873
PauI	GCGCGC	1 cut(s)	1064
PceI	AGGCCT	1 cut(s)	1831
PciI	ACATGT	1 cut(s)	1713
PdmI	GAANNNNTTC	1 cut(s)	290
PfeI	GAWTC	8 cut(s)	73, 128, 161, 380, 407, 440, 655, 775
PflFI	GACNNNGTC	1 cut(s)	1583
PkrI	GCNGC	7 cut(s)	280, 418, 715, 840, 1126, 1417, 1749
PleI	GAGTC	1 cut(s)	422
PpsI	GAGTC	1 cut(s)	422
PpuMI	RGGWCCY	1 cut(s)	1579
PscI	ACATGT	1 cut(s)	1713
PshBI	ATTAAT	1 cut(s)	1608
Psp124BI	GAGCTC	1 cut(s)	1905
Psp5II	RGGWCCY	1 cut(s)	1579
Psp6I	CCWGG	2 cut(s)	1357, 1896
PspFI	CCCAGC	1 cut(s)	1871
PspGI	CCWGG	2 cut(s)	1357, 1896
PspN4I	GGNNCC	6 cut(s)	318, 554, 606, 1078, 1580, 1887
PspPI	GGNCC	4 cut(s)	268, 1316, 1579, 1615
PspPPI	RGGWCCY	1 cut(s)	1579
PstNI	CAGNNNCTG	1 cut(s)	1127
PsuI	RGATCY	2 cut(s)	316, 1483
PsyI	GACNNNGTC	1 cut(s)	1583
PteI	GCGCGC	1 cut(s)	1064
PvuII	CAGCTG	1 cut(s)	713
RruI	TCGCGA	1 cut(s)	1737
RsaI	GTAC	4 cut(s)	203, 353, 554, 1442
RsaNI	GTAC	4 cut(s)	202, 352, 553, 1441
RseI	CAYNNNNRTG	4 cut(s)	372, 783, 1459, 1944
SacI	GAGCTC	1 cut(s)	1905
SaqAI	TTAA	9 cut(s)	306, 1136, 1158, 1212, 1425, 1488, 1518, 1535, 1608
SatI	GCNGC	7 cut(s)	279, 417, 714, 839, 1125, 1416, 1748
Sau3AI	GATC	7 cut(s)	20, 149, 195, 238, 316, 1483, 1596
Sau96I	GGNCC	4 cut(s)	268, 1316, 1579, 1615
SchI	GAGTC	1 cut(s)	422
ScrFI	CCNGG	8 cut(s)	133, 146, 147, 569, 570, 899, 1359, 1898
SduI	GDGCHC	3 cut(s)	369, 940, 1905
SexAI	ACCWGGT	1 cut(s)	1357
SfaNI	GCATC	4 cut(s)	127, 1009, 1537, 1971
SfcI	CTRYAG	1 cut(s)	1371
SfuI	TTCGAA	1 cut(s)	140
SinI	GGWCC	3 cut(s)	1316, 1579, 1615
SmaI	CCCGGG	2 cut(s)	147, 570
SmiMI	CAYNNNNRTG	4 cut(s)	372, 783, 1459, 1944
SmlI	CTYRAG	1 cut(s)	1478
SmoI	CTYRAG	1 cut(s)	1478
SphI	GCATGC	1 cut(s)	1528
SseBI	AGGCCT	1 cut(s)	1831
SsiI	CCGC	4 cut(s)	338, 597, 1125, 1750
SspMI	CTAG	4 cut(s)	1058, 1217, 1323, 1958
SstI	GAGCTC	1 cut(s)	1905
StuI	AGGCCT	1 cut(s)	1831
StyD4I	CCNGG	8 cut(s)	131, 144, 145, 567, 568, 897, 1357, 1896
TaaI	ACNGT	5 cut(s)	182, 263, 1513, 1558, 1674
TaiI	ACGT	1 cut(s)	1333
TaqI	TCGA	3 cut(s)	140, 438, 1366
TaqII	GACCGA	1 cut(s)	2003
TatI	WGTACW	2 cut(s)	201, 1440
TauI	GCSGC	1 cut(s)	1127
TfiI	GAWTC	8 cut(s)	73, 128, 161, 380, 407, 440, 655, 775
Tru1I	TTAA	9 cut(s)	306, 1136, 1158, 1212, 1425, 1488, 1518, 1535, 1608
Tru9I	TTAA	9 cut(s)	306, 1136, 1158, 1212, 1425, 1488, 1518, 1535, 1608
TscAI	CASTG	4 cut(s)	588, 736, 823, 1853
TseFI	GTSAC	3 cut(s)	176, 800, 1666
TseI	GCWGC	6 cut(s)	278, 416, 713, 838, 1415, 1747
Tsp45I	GTSAC	3 cut(s)	176, 800, 1666
TspDTI	ATGAA	6 cut(s)	93, 696, 1566, 1612, 1805, 1980
TspGWI	ACGGA	1 cut(s)	1644
TspMI	CCCGGG	2 cut(s)	145, 568
TspRI	CASTG	4 cut(s)	588, 736, 823, 1853
Tth111I	GACNNNGTC	1 cut(s)	1583
VneI	GTGCAC	1 cut(s)	936
VpaK11BI	GGWCC	3 cut(s)	1316, 1579, 1615
VspI	ATTAAT	1 cut(s)	1608
XapI	RAATTY	2 cut(s)	481, 592
XceI	RCATGY	3 cut(s)	253, 1528, 1717
XmaI	CCCGGG	2 cut(s)	145, 568
XmiI	GTMKAC	1 cut(s)	1111
XmnI	GAANNNNTTC	1 cut(s)	290
XspI	CTAG	4 cut(s)	1058, 1217, 1323, 1958
Zsp2I	ATGCAT	2 cut(s)	1530, 1941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.