pycom03g07110

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000175
Physical Location & Seq
Reverse (-)
5652789 .. 5653070
282 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g07110.1

Sequence Viewer

Length: 282 bp
ATGTTTGAGAGTGAGTTCTATGGTAGGGAAGCTATGAATGTAATAGCATGTGAGGGCGTAGAGAGGGTGGAGAGGCCGGAGACATACAAGCAGTGGCAGGTTCGATGCATGAGGGCTGGTTTGCAGCTGCTGCCATTGGACCAAGATCTAGTGAAGATTTTTAAGGATAAGGTCAAGGCATGGTACCACAAAGACTATGTAATTGATCAAGACAGTGCTTGGATGCTCCAAGGATTGAAGGGCCGAATTGTGTATGCTTCTTCTTGTTGGGTGCCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

94

Amino Acids

10.96

Weight (kDa)

6.56

Isoelectric Point (pI)

56.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 2 - 90 9.7e-19 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 88
Acc65I GGTACC 1 cut(s) 183
AccB1I GGYRCC 2 cut(s) 183, 271
AfaI GTAC 1 cut(s) 185
AgsI TTSAA 1 cut(s) 238
AluBI AGCT 3 cut(s) 32, 127, 278
AluI AGCT 3 cut(s) 32, 127, 278
Alw26I GTCTC 1 cut(s) 74
AlwNI CAGNNNCTG 1 cut(s) 130
AoxI GGCC 2 cut(s) 74, 241
ApeKI GCWGC 3 cut(s) 124, 127, 130
Asp718I GGTACC 1 cut(s) 183
AspS9I GGNCC 2 cut(s) 139, 241
AvaII GGWCC 1 cut(s) 139
BanI GGYRCC 2 cut(s) 183, 271
BbvI GCAGC 3 cut(s) 114, 117, 136
BclI TGATCA 1 cut(s) 205
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 88
BglII AGATCT 1 cut(s) 145
BisI GCNGC 3 cut(s) 125, 128, 131
BlsI GCNGC 3 cut(s) 126, 129, 132
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 2 cut(s) 139, 241
BmiI GGNNCC 2 cut(s) 185, 273
BmsI GCATC 2 cut(s) 95, 213
BsaJI CCNNGG 1 cut(s) 229
BseDI CCNNGG 1 cut(s) 229
BseGI GGATG 1 cut(s) 228
BseXI GCAGC 3 cut(s) 114, 117, 136
BshFI GGCC 2 cut(s) 76, 243
BshNI GGYRCC 2 cut(s) 183, 271
BsiSI CCGG 1 cut(s) 77
BsmAI GTCTC 1 cut(s) 74
BsnI GGCC 2 cut(s) 76, 243
Bsp143I GATC 2 cut(s) 145, 205
BspANI GGCC 2 cut(s) 76, 243
BspLI GGNNCC 2 cut(s) 185, 273
BspMI ACCTGC 1 cut(s) 88
BspT107I GGYRCC 2 cut(s) 183, 271
BssECI CCNNGG 1 cut(s) 229
BssMI GATC 2 cut(s) 145, 205
BssT1I CCWWGG 1 cut(s) 229
Bst4CI ACNGT 1 cut(s) 215
BstAPI GCANNNNNTGC 1 cut(s) 130
BstC8I GCNNGC 1 cut(s) 276
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 228
BstKTI GATC 2 cut(s) 148, 208
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 2 cut(s) 145, 205
BstMWI GCNNNNNNNGC 1 cut(s) 130
BstNSI RCATGY 1 cut(s) 51
BstV1I GCAGC 3 cut(s) 114, 117, 136
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 2 cut(s) 76, 243
BtsCI GGATG 1 cut(s) 228
BtsI GCAGTG 1 cut(s) 98
BtsIMutI CAGTG 2 cut(s) 98, 220
BveI ACCTGC 1 cut(s) 88
Cac8I GCNNGC 1 cut(s) 276
CaiI CAGNNNCTG 1 cut(s) 130
Cfr13I GGNCC 2 cut(s) 139, 241
Csp6I GTAC 1 cut(s) 184
CviAII CATG 3 cut(s) 48, 109, 180
CviJI RGCY 6 cut(s) 32, 76, 116, 127, 243, 278
CviKI_1 RGCY 6 cut(s) 32, 76, 116, 127, 243, 278
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 279
DpnI GATC 2 cut(s) 147, 207
DpnII GATC 2 cut(s) 145, 205
Eco130I CCWWGG 1 cut(s) 229
Eco47I GGWCC 1 cut(s) 139
EcoT14I CCWWGG 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 110
ErhI CCWWGG 1 cut(s) 229
FaeI CATG 3 cut(s) 51, 112, 183
FaiI YATR 8 cut(s) 21, 35, 49, 85, 110, 181, 198, 255
FatI CATG 3 cut(s) 47, 108, 179
FbaI TGATCA 1 cut(s) 205
Fnu4HI GCNGC 3 cut(s) 125, 128, 131
FokI GGATG 1 cut(s) 235
Fsp4HI GCNGC 3 cut(s) 125, 128, 131
FspBI CTAG 1 cut(s) 149
GluI GCNGC 3 cut(s) 125, 128, 131
HaeIII GGCC 2 cut(s) 76, 243
HapII CCGG 1 cut(s) 77
Hin1II CATG 3 cut(s) 51, 112, 183
HpaII CCGG 1 cut(s) 77
Hpy188III TCNNGA 1 cut(s) 209
HpyAV CCTTC 1 cut(s) 232
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 2 cut(s) 108, 124
HpyF10VI GCNNNNNNNGC 1 cut(s) 130
HpyF3I CTNAG 1 cut(s) 279
Hsp92II CATG 3 cut(s) 51, 112, 183
KpnI GGTACC 1 cut(s) 187
Ksp22I TGATCA 1 cut(s) 205
Kzo9I GATC 2 cut(s) 145, 205
LmnI GCTCC 1 cut(s) 231
LpnPI CCDG 3 cut(s) 83, 90, 102
Lsp1109I GCAGC 3 cut(s) 114, 117, 136
LweI GCATC 2 cut(s) 95, 213
MaeI CTAG 1 cut(s) 149
MalI GATC 2 cut(s) 147, 207
MboI GATC 2 cut(s) 145, 205
MboII GAAGA 2 cut(s) 166, 252
MflI RGATCY 1 cut(s) 145
MluCI AATT 2 cut(s) 201, 246
MnlI CCTC 4 cut(s) 46, 57, 66, 105
Mph1103I ATGCAT 1 cut(s) 110
MseI TTAA 1 cut(s) 162
MspA1I CMGCKG 1 cut(s) 127
MspI CCGG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 130
NdeII GATC 2 cut(s) 145, 205
NlaIII CATG 3 cut(s) 51, 112, 183
NlaIV GGNNCC 2 cut(s) 185, 273
NsiI ATGCAT 1 cut(s) 110
NspI RCATGY 1 cut(s) 51
PkrI GCNGC 3 cut(s) 126, 129, 132
PspN4I GGNNCC 2 cut(s) 185, 273
PspPI GGNCC 2 cut(s) 139, 241
PstNI CAGNNNCTG 1 cut(s) 130
PsuI RGATCY 1 cut(s) 145
PvuII CAGCTG 1 cut(s) 127
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 3 cut(s) 125, 128, 131
Sau3AI GATC 2 cut(s) 145, 205
Sau96I GGNCC 2 cut(s) 139, 241
SetI ASST 5 cut(s) 34, 102, 129, 174, 280
SfaNI GCATC 2 cut(s) 95, 213
SinI GGWCC 1 cut(s) 139
Sse9I AATT 2 cut(s) 201, 246
SspMI CTAG 1 cut(s) 149
StyI CCWWGG 1 cut(s) 229
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 1 cut(s) 103
TasI AATT 2 cut(s) 201, 246
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 2 cut(s) 98, 220
TseI GCWGC 3 cut(s) 124, 127, 130
TspDTI ATGAA 1 cut(s) 50
TspRI CASTG 2 cut(s) 98, 220
VpaK11BI GGWCC 1 cut(s) 139
XceI RCATGY 1 cut(s) 51
XspI CTAG 1 cut(s) 149
Zsp2I ATGCAT 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.