Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000175

Physical Location & Seq

Genomic Coordinates Reverse (-)

71422415 .. 71424403

Gene Structure 1989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G040470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1989 bp

ATGGATACCTTTTTTGATAGAGTTTCTGGTCCTACGGAAAGATTCAAATTTGGCCATGCCTTAACTTCAGTCACTTCCAATCCAAATCTTGACAACAGGTTTCAAATAAATCAGGAATCTACCGATACAGTTTTTCATCCCAGTGATTCAGGTACGTCTTTGAGCCCGGATTCCGAGGAAGAAACTTTTGATATAAATTACTTCAATAATCCGATGCTCAAGTACATAAGCGATATTCTTCTGGATGAAGAACTGGAAGGAAAGAACTGCATGTTGCAGGACAGTTTGTCTCTCCAAGCTGCTGAAAAATCTTTCTACGATGTCCTTAATCTGAAGGATCCTCCTCCACCCAACCAACTCCCTCTGCCTGTGTACCAAAACTTTGAGCACTCGGATGATGATTCCACTCATATGTTGCACCAATCTTCTCTCGTTGAGTCTTTTTCAGATACTCTTTTGGTTTCAGATTCTCATTTCAAGAAGCAAAGTCTTGGGAATTTCGAACAGGCTGGGGAGGCAAACAAGTTACTTACAAATGGGAATTTTGGATTCATTGATGAGGAGAGGTACCAAACAAATGGACTAAAGGGAAAGAAGAATCATCAAAGAGATGATGAAAATTATCCAGAAGATGGGAGAAGCAGCAAGCAGTCGGTTGTTTCTGCTGATGACTCTGAGCCTCCAGAAATGTTTGATAAGGTGTTACTCTGTCAAGGTGAGCATCATCAGGAGTGGGAGTCTTGTACTCCTCATTGCTCTATGAAAAGGGAGGGAACAGAGCAGTTGCAGCATAGCAGGCAGTCAAAAGGATCTAAAACAAATCGTTCAAAGCGACAAAATAAAGATGAGGAAGGAGTAGATTTGACCACCATGCTAAATCAATGTGCACAAGCAGTGGCAAGCTATGAACAAGGAACGGCGAGTGAACTACTCAAGAAGATAAGGCAGCACTCCTCCCCCCATGGACATGCAACTCAGAGATTAGCTCACTACTTTGCCAATGGCCTAGAGGCACGCCTTACTGGTGTCGGAACCCCATCATTTTCACCTCTCTTTAGTAGGCAGACATCAGCCGCTGAAATCCTACTAGCTTACGAGGTATTTACTAATTCATGCCCTTTCAAGACGATATCACAATTCCTTGCCAACAGAACAATCATGAAGCTAGCAAGAAATGAAACAAGGCTTCACATTATTGATTTTGGTATTTCTTATGGTTTCCAATGGCCTTGCCTTATCCAACATCTCTCCAATAGACCTAACGGACCACCTAAGTTGCATATCACAGCAATTGAGCTTCCACAACCTGGTTTTCGACCTACAGAAAGGGTTGAAGAGACAGGACGTCGCCTAGCAAGGTATTGTGCAAAGTTCAGTGTGCCGTTTGAGTACAATGTCATTGCTCAAAAATGGGAAACTATCCAATGTGAGGATCTTAAAATTGACAGAAACGAGCTGGTAGTGGTCAATTGTCTGCACCGGTTAAGGCACATACATGATGAGACGGTGATGGAGAACTCTCCGAGAGATGCCGTTCTGAAGTTGATCAAGAATATAAACCCCAACCTTTTTATTCATGGGATTGTCAATGGGACACACAATACACCCTTCTTTGCTACACGGTTCAGAGAGGCACTCTTGCACTTCTATGCCTTGTTTGATATACATGAAGCAACCATTCCTCGTGAAGAGAAACGTCGGATGATGTTGGAGAAAGATTTACATGGTAGAGACATAATGAATATCGTAGCATGCGAGGGAGTGGAAAGAGTTGAAAGGCCTGAGACTTACAAGAAGTGGCAGATCAGGAATGTAAGGGCTGGGTTGAAGCAGCTCCCATTGGACCAGGAACTGTTGAAGAAAGCGAAGAAATTGTCGGAGTTAATGGGTTATCATAATGATTTTAGAGTTGATGAAGATGGGCATTGGATGCTGCATGGATGGAAAGGAAAGATCATCACGGCTCTTTCATTTTGGAAACCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

662

Amino Acids

75.96

Weight (kDa)

6.09

Isoelectric Point (pI)

44.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	289 - 660	5.8e-117	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca	FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica	MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica	Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis	pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis	RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata	RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora	Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa	Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha	Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana	Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1348
Acc65I	GGTACC	1 cut(s)	567
AccB1I	GGYRCC	1 cut(s)	567
AccB7I	CCANNNNNTGG	2 cut(s)	632, 1307
AciI	CCGC	1 cut(s)	1074
AclWI	GGATC	4 cut(s)	332, 345, 817, 1440
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	3 cut(s)	47, 496, 541
AcuI	CTGAAG	3 cut(s)	51, 353, 1559
AcyI	GRCGYC	1 cut(s)	1345
AfaI	GTAC	6 cut(s)	154, 224, 374, 569, 745, 1391
AfiI	CCNNNNNNNGG	3 cut(s)	632, 1307, 1429
AgeI	ACCGGT	1 cut(s)	1479
AhdI	GACNNNNNGTC	2 cut(s)	286, 1344
AjnI	CCWGG	2 cut(s)	1306, 1845
AluBI	AGCT	8 cut(s)	299, 903, 986, 1091, 1165, 1297, 1456, 1834
AluI	AGCT	8 cut(s)	299, 903, 986, 1091, 1165, 1297, 1456, 1834
Alw21I	GWGCWC	2 cut(s)	390, 889
Alw26I	GTCTC	5 cut(s)	294, 1331, 1496, 1725, 1778
Alw44I	GTGCAC	1 cut(s)	885
AlwI	GGATC	4 cut(s)	332, 345, 817, 1440
AlwNI	CAGNNNCTG	2 cut(s)	1076, 1852
AoxI	GGCC	4 cut(s)	52, 1003, 1226, 1778
ApaLI	GTGCAC	1 cut(s)	885
ApeKI	GCWGC	6 cut(s)	299, 642, 787, 946, 1831, 1933
ApoI	RAATTY	3 cut(s)	47, 496, 541
ArsI	GACNNNNNNTTYG	2 cut(s)	1859, 1891
AsiGI	ACCGGT	1 cut(s)	1479
Asp718I	GGTACC	1 cut(s)	567
AspS9I	GGNCC	3 cut(s)	29, 1265, 1843
AsuC2I	CCSGG	1 cut(s)	167
AsuHPI	GGTGA	3 cut(s)	728, 1038, 1519
AsuII	TTCGAA	1 cut(s)	501
AsuNHI	GCTAGC	1 cut(s)	1165
AvaII	GGWCC	3 cut(s)	29, 1265, 1843
BaeGI	GKGCMC	1 cut(s)	889
BalI	TGGCCA	1 cut(s)	54
BamHI	GGATCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	567
BanII	GRGCYC	1 cut(s)	167
BauI	CACGAG	1 cut(s)	1683
Bbv12I	GWGCWC	2 cut(s)	390, 889
BbvI	GCAGC	6 cut(s)	286, 654, 799, 958, 1843, 1920
BccI	CCATC	5 cut(s)	626, 1045, 1504, 1913, 1935
BceAI	ACGGC	4 cut(s)	933, 1366, 1517, 1977
BciT130I	CCWGG	2 cut(s)	1308, 1847
BclI	TGATCA	1 cut(s)	1545
BcnI	CCSGG	1 cut(s)	167
BcoDI	GTCTC	5 cut(s)	294, 1331, 1496, 1725, 1778
BfaI	CTAG	5 cut(s)	1007, 1088, 1166, 1352, 1987
BfmI	CTRYAG	1 cut(s)	1320
BisI	GCNGC	7 cut(s)	300, 643, 788, 947, 1074, 1832, 1934
BlsI	GCNGC	7 cut(s)	301, 644, 789, 948, 1075, 1833, 1935
Bme1390I	CCNGG	3 cut(s)	167, 1308, 1847
Bme18I	GGWCC	3 cut(s)	29, 1265, 1843
BmeRI	GACNNNNNGTC	2 cut(s)	286, 1344
BmgT120I	GGNCC	3 cut(s)	29, 1265, 1843
BmiI	GGNNCC	3 cut(s)	339, 569, 1033
BmrFI	CCNGG	3 cut(s)	167, 1308, 1847
BmrI	ACTGGG	1 cut(s)	135
BmsI	GCATC	4 cut(s)	204, 730, 1519, 1920
BmtI	GCTAGC	1 cut(s)	1169
BmuI	ACTGGG	1 cut(s)	135
BplI	GAGNNNNNCTC	4 cut(s)	970, 1002, 1620, 1652
BpmI	CTGGAG	1 cut(s)	666
Bpu14I	TTCGAA	1 cut(s)	501
BpuEI	CTTGAG	2 cut(s)	203, 917
BpuMI	CCSGG	1 cut(s)	167
BsaHI	GRCGYC	1 cut(s)	1345
BsaJI	CCNNGG	2 cut(s)	174, 961
BsaWI	WCCGGW	1 cut(s)	1479
BsaXI	ACNNNNNCTCC	2 cut(s)	722, 752
Bsc4I	CCNNNNNNNGG	3 cut(s)	632, 1307, 1429
Bse118I	RCCGGY	1 cut(s)	1479
Bse1I	ACTGG	3 cut(s)	141, 258, 1027
Bse3DI	GCAATG	2 cut(s)	751, 1398
BseBI	CCWGG	2 cut(s)	1308, 1847
BseDI	CCNNGG	2 cut(s)	174, 961
BseGI	GGATG	6 cut(s)	136, 250, 400, 1707, 1935, 1946
BseLI	CCNNNNNNNGG	3 cut(s)	632, 1307, 1429
BseMI	GCAATG	2 cut(s)	751, 1398
BseMII	CTCAG	3 cut(s)	666, 989, 1773
BseNI	ACTGG	3 cut(s)	141, 258, 1027
BseRI	GAGGAG	4 cut(s)	333, 575, 738, 943
BseSI	GKGCMC	1 cut(s)	889
BseXI	GCAGC	6 cut(s)	286, 654, 799, 958, 1843, 1920
BseYI	CCCAGC	2 cut(s)	509, 1820
BsgI	GTGCAG	1 cut(s)	1460
BshFI	GGCC	4 cut(s)	54, 1005, 1228, 1780
BshNI	GGYRCC	1 cut(s)	567
BshTI	ACCGGT	1 cut(s)	1479
BsiHKAI	GWGCWC	2 cut(s)	390, 889
BsiSI	CCGG	2 cut(s)	167, 1480
BslFI	GGGAC	1 cut(s)	1606
BslI	CCNNNNNNNGG	3 cut(s)	632, 1307, 1429
BsmAI	GTCTC	5 cut(s)	294, 1331, 1496, 1725, 1778
BsmBI	CGTCTC	1 cut(s)	1496
BsmFI	GGGAC	1 cut(s)	1606
BsnI	GGCC	4 cut(s)	54, 1005, 1228, 1780
Bsp119I	TTCGAA	1 cut(s)	501
Bsp1286I	GDGCHC	3 cut(s)	167, 390, 889
Bsp143I	GATC	6 cut(s)	337, 809, 1432, 1545, 1803, 1953
Bsp19I	CCATGG	1 cut(s)	961
BspACI	CCGC	1 cut(s)	1074
BspANI	GGCC	4 cut(s)	54, 1005, 1228, 1780
BspCNI	CTCAG	3 cut(s)	667, 988, 1774
BspHI	TCATGA	1 cut(s)	1158
BspLI	GGNNCC	3 cut(s)	339, 569, 1033
BspOI	GCTAGC	1 cut(s)	1169
BspPI	GGATC	4 cut(s)	332, 345, 817, 1440
BspT104I	TTCGAA	1 cut(s)	501
BspT107I	GGYRCC	1 cut(s)	567
BsrDI	GCAATG	2 cut(s)	751, 1398
BsrFI	RCCGGY	1 cut(s)	1479
BsrI	ACTGG	3 cut(s)	141, 258, 1027
BssAI	RCCGGY	1 cut(s)	1479
BssECI	CCNNGG	2 cut(s)	174, 961
BssMI	GATC	6 cut(s)	337, 809, 1432, 1545, 1803, 1953
BssNI	GRCGYC	1 cut(s)	1345
BssSI	CACGAG	1 cut(s)	1683
BssT1I	CCWWGG	1 cut(s)	961
Bst2BI	CACGAG	1 cut(s)	1683
Bst2UI	CCWGG	2 cut(s)	1308, 1847
Bst4CI	ACNGT	5 cut(s)	130, 284, 1507, 1623, 1854
Bst6I	CTCTTC	2 cut(s)	1329, 1683
BstACI	GRCGYC	1 cut(s)	1345
BstAPI	GCANNNNNTGC	1 cut(s)	1930
BstBI	TTCGAA	1 cut(s)	501
BstC8I	GCNNGC	6 cut(s)	647, 797, 901, 1015, 1167, 1753
BstDEI	CTNAG	4 cut(s)	675, 975, 1272, 1782
BstDSI	CCRYGG	1 cut(s)	961
BstF5I	GGATG	6 cut(s)	136, 250, 400, 1707, 1935, 1946
BstKTI	GATC	6 cut(s)	340, 812, 1435, 1548, 1806, 1956
BstMAI	GTCTC	5 cut(s)	294, 1331, 1496, 1725, 1778
BstMBI	GATC	6 cut(s)	337, 809, 1432, 1545, 1803, 1953
BstMWI	GCNNNNNNNGC	4 cut(s)	515, 787, 796, 1930
BstNI	CCWGG	2 cut(s)	1308, 1847
BstNSI	RCATGY	3 cut(s)	274, 971, 1755
BstSCI	CCNGG	3 cut(s)	165, 1306, 1845
BstSFI	CTRYAG	1 cut(s)	1320
BstSLI	GKGCMC	1 cut(s)	889
BstV1I	GCAGC	6 cut(s)	286, 654, 799, 958, 1843, 1920
BstX2I	RGATCY	3 cut(s)	337, 809, 1432
BstXI	CCANNNNNNTGG	1 cut(s)	578
BstYI	RGATCY	3 cut(s)	337, 809, 1432
BsuRI	GGCC	4 cut(s)	54, 1005, 1228, 1780
BtgI	CCRYGG	1 cut(s)	961
BtsCI	GGATG	6 cut(s)	136, 250, 400, 1707, 1935, 1946
BtsI	GCAGTG	1 cut(s)	900
BtsIMutI	CAGTG	3 cut(s)	148, 900, 1381
Cac8I	GCNNGC	6 cut(s)	647, 797, 901, 1015, 1167, 1753
CaiI	CAGNNNCTG	2 cut(s)	1076, 1852
CciI	TCATGA	1 cut(s)	1158
Cfr10I	RCCGGY	1 cut(s)	1479
Cfr13I	GGNCC	3 cut(s)	29, 1265, 1843
CsiI	ACCWGGT	1 cut(s)	1306
Csp6I	GTAC	6 cut(s)	153, 223, 373, 568, 744, 1390
CspAI	ACCGGT	1 cut(s)	1479
CspCI	CAANNNNNGTGG	2 cut(s)	1257, 1292
CviQI	GTAC	6 cut(s)	153, 223, 373, 568, 744, 1390
DdeI	CTNAG	4 cut(s)	675, 975, 1272, 1782
DpnI	GATC	6 cut(s)	339, 811, 1434, 1547, 1805, 1955
DpnII	GATC	6 cut(s)	337, 809, 1432, 1545, 1803, 1953
DriI	GACNNNNNGTC	2 cut(s)	286, 1344
EaeI	YGGCCR	1 cut(s)	52
Eam1104I	CTCTTC	2 cut(s)	1329, 1683
Eam1105I	GACNNNNNGTC	2 cut(s)	286, 1344
EarI	CTCTTC	2 cut(s)	1329, 1683
Eco130I	CCWWGG	1 cut(s)	961
Eco147I	AGGCCT	1 cut(s)	1780
Eco24I	GRGCYC	1 cut(s)	167
Eco32I	GATATC	1 cut(s)	1131
Eco47I	GGWCC	3 cut(s)	29, 1265, 1843
Eco57I	CTGAAG	3 cut(s)	51, 353, 1559
EcoRII	CCWGG	2 cut(s)	1306, 1845
EcoRV	GATATC	1 cut(s)	1131
EcoT14I	CCWWGG	1 cut(s)	961
EcoT38I	GRGCYC	1 cut(s)	167
ErhI	CCWWGG	1 cut(s)	961
Esp3I	CGTCTC	1 cut(s)	1496
FaqI	GGGAC	1 cut(s)	1606
FauNDI	CATATG	1 cut(s)	411
FbaI	TGATCA	1 cut(s)	1545
Fnu4HI	GCNGC	7 cut(s)	300, 643, 788, 947, 1074, 1832, 1934
FokI	GGATG	6 cut(s)	123, 257, 407, 1714, 1942, 1953
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	7 cut(s)	300, 643, 788, 947, 1074, 1832, 1934
FspBI	CTAG	5 cut(s)	1007, 1088, 1166, 1352, 1987
GluI	GCNGC	7 cut(s)	300, 643, 788, 947, 1074, 1832, 1934
GsaI	CCCAGC	2 cut(s)	513, 1824
GsuI	CTGGAG	1 cut(s)	666
HaeIII	GGCC	4 cut(s)	54, 1005, 1228, 1780
HapII	CCGG	2 cut(s)	167, 1480
Hin1I	GRCGYC	1 cut(s)	1345
HpaII	CCGG	2 cut(s)	167, 1480
HphI	GGTGA	3 cut(s)	728, 1038, 1519
Hpy166II	GTNNAC	3 cut(s)	373, 887, 926
Hpy8I	GTNNAC	3 cut(s)	373, 887, 926
Hpy99I	CGWCG	2 cut(s)	1350, 1701
HpyAV	CCTTC	4 cut(s)	251, 328, 845, 1618
HpyCH4III	ACNGT	5 cut(s)	130, 284, 1507, 1623, 1854
HpyCH4IV	ACGT	3 cut(s)	155, 1345, 1696
HpyF10VI	GCNNNNNNNGC	4 cut(s)	515, 787, 796, 1930
HpyF3I	CTNAG	4 cut(s)	675, 975, 1272, 1782
HpySE526I	ACGT	3 cut(s)	155, 1345, 1696
Hsp92I	GRCGYC	1 cut(s)	1345
KpnI	GGTACC	1 cut(s)	571
Ksp22I	TGATCA	1 cut(s)	1545
Kzo9I	GATC	6 cut(s)	337, 809, 1432, 1545, 1803, 1953
LmnI	GCTCC	1 cut(s)	1839
Lsp1109I	GCAGC	6 cut(s)	286, 654, 799, 958, 1843, 1920
LweI	GCATC	4 cut(s)	204, 730, 1519, 1920
MabI	ACCWGGT	1 cut(s)	1306
MaeI	CTAG	5 cut(s)	1007, 1088, 1166, 1352, 1987
MaeII	ACGT	3 cut(s)	155, 1345, 1696
MaeIII	GTNAC	3 cut(s)	70, 525, 702
MalI	GATC	6 cut(s)	339, 811, 1434, 1547, 1805, 1955
MboI	GATC	6 cut(s)	337, 809, 1432, 1545, 1803, 1953
MfeI	CAATTG	2 cut(s)	1290, 1468
MflI	RGATCY	3 cut(s)	337, 809, 1432
MhlI	GDGCHC	3 cut(s)	167, 390, 889
MlsI	TGGCCA	1 cut(s)	54
MluNI	TGGCCA	1 cut(s)	54
MlyI	GAGTC	3 cut(s)	446, 665, 746
MmeI	TCCRAC	5 cut(s)	1009, 1264, 1679, 1689, 1857
Mox20I	TGGCCA	1 cut(s)	54
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	5 cut(s)	62, 327, 1437, 1484, 1883
MslI	CAYNNNNRTG	6 cut(s)	141, 393, 410, 966, 1494, 1647
Msp20I	TGGCCA	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	1076
MspI	CCGG	2 cut(s)	167, 1480
MspR9I	CCNGG	3 cut(s)	167, 1308, 1847
MunI	CAATTG	2 cut(s)	1290, 1468
MvaI	CCWGG	2 cut(s)	1308, 1847
MwoI	GCNNNNNNNGC	4 cut(s)	515, 787, 796, 1930
NciI	CCSGG	1 cut(s)	167
NcoI	CCATGG	1 cut(s)	961
NdeI	CATATG	1 cut(s)	411
NdeII	GATC	6 cut(s)	337, 809, 1432, 1545, 1803, 1953
NheI	GCTAGC	1 cut(s)	1165
NlaIV	GGNNCC	3 cut(s)	339, 569, 1033
NmuCI	GTSAC	1 cut(s)	70
NspI	RCATGY	3 cut(s)	274, 971, 1755
NspV	TTCGAA	1 cut(s)	501
PaeI	GCATGC	1 cut(s)	1755
PagI	TCATGA	1 cut(s)	1158
PceI	AGGCCT	1 cut(s)	1780
PcsI	WCGNNNNNNNCGW	2 cut(s)	829, 1752
PfeI	GAWTC	8 cut(s)	42, 116, 146, 170, 401, 467, 549, 598
PflMI	CCANNNNNTGG	2 cut(s)	632, 1307
PinAI	ACCGGT	1 cut(s)	1479
PkrI	GCNGC	7 cut(s)	301, 644, 789, 948, 1075, 1833, 1935
PleI	GAGTC	3 cut(s)	445, 665, 745
PpsI	GAGTC	3 cut(s)	445, 665, 745
Psp6I	CCWGG	2 cut(s)	1306, 1845
PspFI	CCCAGC	2 cut(s)	509, 1820
PspGI	CCWGG	2 cut(s)	1306, 1845
PspN4I	GGNNCC	3 cut(s)	339, 569, 1033
PspPI	GGNCC	3 cut(s)	29, 1265, 1843
PstNI	CAGNNNCTG	2 cut(s)	1076, 1852
PsuI	RGATCY	3 cut(s)	337, 809, 1432
RsaI	GTAC	6 cut(s)	154, 224, 374, 569, 745, 1391
RsaNI	GTAC	6 cut(s)	153, 223, 373, 568, 744, 1390
RseI	CAYNNNNRTG	6 cut(s)	141, 393, 410, 966, 1494, 1647
SaqAI	TTAA	5 cut(s)	62, 327, 1437, 1484, 1883
SatI	GCNGC	7 cut(s)	300, 643, 788, 947, 1074, 1832, 1934
Sau3AI	GATC	6 cut(s)	337, 809, 1432, 1545, 1803, 1953
Sau96I	GGNCC	3 cut(s)	29, 1265, 1843
SchI	GAGTC	3 cut(s)	446, 665, 746
ScrFI	CCNGG	3 cut(s)	167, 1308, 1847
SduI	GDGCHC	3 cut(s)	167, 390, 889
SexAI	ACCWGGT	1 cut(s)	1306
SfaNI	GCATC	4 cut(s)	204, 730, 1519, 1920
SfcI	CTRYAG	1 cut(s)	1320
SfuI	TTCGAA	1 cut(s)	501
SinI	GGWCC	3 cut(s)	29, 1265, 1843
SmiMI	CAYNNNNRTG	6 cut(s)	141, 393, 410, 966, 1494, 1647
SmlI	CTYRAG	2 cut(s)	218, 932
SmoI	CTYRAG	2 cut(s)	218, 932
SphI	GCATGC	1 cut(s)	1755
SseBI	AGGCCT	1 cut(s)	1780
SsiI	CCGC	1 cut(s)	1074
SspMI	CTAG	5 cut(s)	1007, 1088, 1166, 1352, 1987
StuI	AGGCCT	1 cut(s)	1780
StyD4I	CCNGG	3 cut(s)	165, 1306, 1845
StyI	CCWWGG	1 cut(s)	961
TaaI	ACNGT	5 cut(s)	130, 284, 1507, 1623, 1854
TaiI	ACGT	3 cut(s)	158, 1348, 1699
TaqI	TCGA	2 cut(s)	501, 1315
TatI	WGTACW	3 cut(s)	222, 743, 1389
TauI	GCSGC	1 cut(s)	1076
TfiI	GAWTC	8 cut(s)	42, 116, 146, 170, 401, 467, 549, 598
Tru1I	TTAA	5 cut(s)	62, 327, 1437, 1484, 1883
Tru9I	TTAA	5 cut(s)	62, 327, 1437, 1484, 1883
TscAI	CASTG	3 cut(s)	148, 900, 1381
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	6 cut(s)	299, 642, 787, 946, 1831, 1933
Tsp45I	GTSAC	1 cut(s)	70
TspGWI	ACGGA	2 cut(s)	50, 1278
TspRI	CASTG	3 cut(s)	148, 900, 1381
Van91I	CCANNNNNTGG	2 cut(s)	632, 1307
VneI	GTGCAC	1 cut(s)	885
VpaK11BI	GGWCC	3 cut(s)	29, 1265, 1843
XapI	RAATTY	3 cut(s)	47, 496, 541
XceI	RCATGY	3 cut(s)	274, 971, 1755
XspI	CTAG	5 cut(s)	1007, 1088, 1166, 1352, 1987
ZraI	GACGTC	1 cut(s)	1346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.