Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0000175

Physical Location & Seq

Genomic Coordinates Forward (+)

14820881 .. 14821354

Gene Structure 474 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g11870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGACAGTGTAAGAAACAGGGTTCTTGATTTGATAAGGAGAATCAATCCAGACATTTTCATCCATGGAGTTGTTAATGGAGCGTACAATGCCCCCTTCTTCGTTACCAGGTTCCGAGAGGCGTTATTTCATTTTTCTTCACTGTTTGATATGCTTGAAACTGTTGTACCCCGTGAGGATCAGGAAAGGATGTTAATTGAGAAAGAGATCTTTGGCAGGGAGGCTTTAAATGTTATAGCTTGCGAAGGCTGGGAGAGAGTGGAAAGGCCAGAAACATACAAGCAATGGCATGTTCGTAACTTGAGGGCTGGGTTTGTGCAAATACCTTTTGACCGAGAGCTTGTGAAGGCGGCAGCTAAGAAAGTAAGCTCTCTTTACCACAAGGACTTTGTCATCGATGAAGATAGCCGGTGGCTGTTGCAGGGATGGAAGGGACGAACCGCCTTTGCCCTTTCTGCTTGGAAACCTGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

158

Amino Acids

18.48

Weight (kDa)

8.79

Isoelectric Point (pI)

49.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	3 - 155	5.9e-45	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca	FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica	MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica	Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis	pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis	RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata	RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora	Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa	Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha	Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana	Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	350, 441
AclWI	GGATC	1 cut(s)	186
AfaI	GTAC	2 cut(s)	86, 168
AgsI	TTSAA	1 cut(s)	158
AjnI	CCWGG	1 cut(s)	107
AluBI	AGCT	4 cut(s)	239, 340, 356, 369
AluI	AGCT	4 cut(s)	239, 340, 356, 369
AlwI	GGATC	1 cut(s)	186
AoxI	GGCC	1 cut(s)	266
ApeKI	GCWGC	1 cut(s)	353
BaeI	ACNNNNGTAYC	2 cut(s)	150, 183
BbvI	GCAGC	1 cut(s)	365
BccI	CCATC	1 cut(s)	420
BciT130I	CCWGG	1 cut(s)	109
BglII	AGATCT	1 cut(s)	207
BisI	GCNGC	2 cut(s)	351, 354
BlsI	GCNGC	2 cut(s)	352, 355
Bme1390I	CCNGG	1 cut(s)	109
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	109
BpuEI	CTTGAG	1 cut(s)	322
Bsa29I	ATCGAT	1 cut(s)	396
BsaJI	CCNNGG	1 cut(s)	64
Bse118I	RCCGGY	1 cut(s)	408
Bse3DI	GCAATG	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	109
BseCI	ATCGAT	1 cut(s)	396
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	3 cut(s)	60, 195, 431
BseMI	GCAATG	1 cut(s)	290
BseXI	GCAGC	1 cut(s)	365
BseYI	CCCAGC	2 cut(s)	249, 308
BshFI	GGCC	1 cut(s)	268
BshVI	ATCGAT	1 cut(s)	396
BsiSI	CCGG	1 cut(s)	409
BslFI	GGGAC	1 cut(s)	447
BsmFI	GGGAC	1 cut(s)	447
BsnI	GGCC	1 cut(s)	268
Bsp143I	GATC	2 cut(s)	178, 207
Bsp19I	CCATGG	1 cut(s)	64
BspACI	CCGC	2 cut(s)	350, 441
BspANI	GGCC	1 cut(s)	268
BspDI	ATCGAT	1 cut(s)	396
BspLI	GGNNCC	1 cut(s)	113
BspPI	GGATC	1 cut(s)	186
BsrDI	GCAATG	1 cut(s)	290
BsrFI	RCCGGY	1 cut(s)	408
BssAI	RCCGGY	1 cut(s)	408
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	2 cut(s)	178, 207
BssT1I	CCWWGG	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	109
Bst4CI	ACNGT	3 cut(s)	8, 144, 163
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	357
BstDSI	CCRYGG	1 cut(s)	64
BstF5I	GGATG	3 cut(s)	60, 195, 431
BstKTI	GATC	2 cut(s)	181, 210
BstMBI	GATC	2 cut(s)	178, 207
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 455
BstNI	CCWGG	1 cut(s)	109
BstNSI	RCATGY	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	365
BstX2I	RGATCY	1 cut(s)	207
BstYI	RGATCY	1 cut(s)	207
Bsu15I	ATCGAT	1 cut(s)	396
BsuRI	GGCC	1 cut(s)	268
BsuTUI	ATCGAT	1 cut(s)	396
BtgI	CCRYGG	1 cut(s)	64
BtsCI	GGATG	3 cut(s)	60, 195, 431
BtsIMutI	CAGTG	2 cut(s)	13, 140
Cac8I	GCNNGC	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	408
ClaI	ATCGAT	1 cut(s)	396
CsiI	ACCWGGT	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	85, 167
CviAII	CATG	2 cut(s)	65, 290
CviQI	GTAC	2 cut(s)	85, 167
DdeI	CTNAG	1 cut(s)	357
DpnI	GATC	2 cut(s)	180, 209
DpnII	GATC	2 cut(s)	178, 207
DraI	TTTAAA	1 cut(s)	228
Eco130I	CCWWGG	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	107
EcoT14I	CCWWGG	1 cut(s)	64
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	2 cut(s)	68, 293
FaiI	YATR	5 cut(s)	66, 152, 236, 277, 291
FaqI	GGGAC	1 cut(s)	447
FatI	CATG	2 cut(s)	64, 289
Fnu4HI	GCNGC	2 cut(s)	351, 354
FokI	GGATG	3 cut(s)	47, 202, 438
Fsp4HI	GCNGC	2 cut(s)	351, 354
GluI	GCNGC	2 cut(s)	351, 354
GsaI	CCCAGC	2 cut(s)	253, 312
HaeIII	GGCC	1 cut(s)	268
HapII	CCGG	1 cut(s)	409
Hin1II	CATG	2 cut(s)	68, 293
HinfI	GANTC	1 cut(s)	42
HpaII	CCGG	1 cut(s)	409
Hpy188I	TCNGA	1 cut(s)	116
Hpy188III	TCNNGA	3 cut(s)	26, 50, 182
HpyAV	CCTTC	4 cut(s)	106, 239, 340, 424
HpyCH4III	ACNGT	3 cut(s)	8, 144, 163
HpyCH4V	TGCA	2 cut(s)	319, 421
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 455
HpyF3I	CTNAG	1 cut(s)	357
Hsp92II	CATG	2 cut(s)	68, 293
Kzo9I	GATC	2 cut(s)	178, 207
LmnI	GCTCC	1 cut(s)	80
Lsp1109I	GCAGC	1 cut(s)	365
MabI	ACCWGGT	1 cut(s)	107
MaeIII	GTNAC	2 cut(s)	103, 296
MalI	GATC	2 cut(s)	180, 209
MboI	GATC	2 cut(s)	178, 207
MboII	GAAGA	3 cut(s)	91, 129, 413
MflI	RGATCY	1 cut(s)	207
MluCI	AATT	1 cut(s)	195
MnlI	CCTC	4 cut(s)	112, 169, 214, 297
MseI	TTAA	4 cut(s)	75, 194, 227, 472
MspI	CCGG	1 cut(s)	409
MspR9I	CCNGG	1 cut(s)	109
MvaI	CCWGG	1 cut(s)	109
MwoI	GCNNNNNNNGC	2 cut(s)	89, 455
NcoI	CCATGG	1 cut(s)	64
NdeII	GATC	2 cut(s)	178, 207
NlaIII	CATG	2 cut(s)	68, 293
NlaIV	GGNNCC	1 cut(s)	113
NspI	RCATGY	1 cut(s)	293
PfeI	GAWTC	1 cut(s)	42
PflFI	GACNNNGTC	1 cut(s)	389
PkrI	GCNGC	2 cut(s)	352, 355
Psp6I	CCWGG	1 cut(s)	107
PspFI	CCCAGC	2 cut(s)	249, 308
PspGI	CCWGG	1 cut(s)	107
PspN4I	GGNNCC	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	207
PsyI	GACNNNGTC	1 cut(s)	389
RsaI	GTAC	2 cut(s)	86, 168
RsaNI	GTAC	2 cut(s)	85, 167
SaqAI	TTAA	4 cut(s)	75, 194, 227, 472
SatI	GCNGC	2 cut(s)	351, 354
Sau3AI	GATC	2 cut(s)	178, 207
ScrFI	CCNGG	1 cut(s)	109
SetI	ASST	7 cut(s)	113, 241, 328, 342, 358, 371, 469
SexAI	ACCWGGT	1 cut(s)	107
SmlI	CTYRAG	1 cut(s)	301
SmoI	CTYRAG	1 cut(s)	301
Sse9I	AATT	1 cut(s)	195
SsiI	CCGC	2 cut(s)	350, 441
StyD4I	CCNGG	1 cut(s)	107
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	3 cut(s)	8, 144, 163
TaqI	TCGA	1 cut(s)	396
TaqII	GACCGA	1 cut(s)	348
TasI	AATT	1 cut(s)	195
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	1 cut(s)	42
Tru1I	TTAA	4 cut(s)	75, 194, 227, 472
Tru9I	TTAA	4 cut(s)	75, 194, 227, 472
TscAI	CASTG	2 cut(s)	13, 147
TseI	GCWGC	1 cut(s)	353
TspDTI	ATGAA	3 cut(s)	49, 119, 414
TspRI	CASTG	2 cut(s)	13, 147
Tth111I	GACNNNGTC	1 cut(s)	389
XceI	RCATGY	1 cut(s)	293

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.