Rroxscaffold_1G00015390

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000175
Physical Location & Seq
Reverse (-)
19156655 .. 19160603
3949 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00015390.1

Sequence Viewer

Length: 2160 bp
ATGTACTCGGTTGTACCTAGGCTTTGCATCCTTTCATTTATTCTAAGTTGGCGGCCATATTTTTCAGTACCACCCAGCTCTCTTAAATTTATTAGGAGCATATACACTTCCCTACTCAATTCACTCACTTACACCTTTATGGATGAATTTCCAAGTTCCATGAATAATTTCATGCTTTACCAGAACTCAATGCCAACTTCAGGTCAGAATATCTTTGTTACTGAATCTGATCAACACAATCGTGAATTTAGTGATCCCAGTTTCTTTCCATCCAATCCAAACCCTCCTTCTCATGATGATTCATCTTCATCTTTGGGTTTGAGCTCAGAGGGGGAGTATTACTCTCCCTCTATTGCTACTCTCCAATACATAAGTCAGATGCTTATGGAAGAAGACTTGGAGAAGAAACCCTGCATGCTTCAGGACTGTTTGGCCCTCCAAGCCACTGAGAAATCCTTACATGATGTCCTAGTTCAGCAATATCCTCCTTCGTCTAATCACCTTCTCACTTCTTCCACTCAGAAAAATGTTGAGATATCTGATGATTTCATTAACCACAGAAGTAATAGCTCCATTGCCGCTAGGAAGTGGGATGATGGCTCAGGTTGGATTTCTTTACAAAATGTTCTAGAATCATTTCCTGTGGAAAATACTACCCTTTCGGTTCCAAATCCTTTTCCCTCAAATGGCAAGGGTGAAATCATAGATCAAGAAAGGGACTCATCATTTCTCATACAGCCAAGGGAGCTGACTGAGGATGGGAATGACTCAACAAACAGATCAAGGAGCAAGAAAGATCGGCAGTGGGAAGATAGTGATTATCAAGAACAAGGGAGAAGCAACAAGCAGACAGCACTTTACGCAGCTGAATCTGAGCCACCAGAGATGTTAGATCAGGTACTGCTCTATCAATATCAAAACCCATGTTCTTCTCTTCAGGAATCTGATCAGCTTAAATGGAGAAGTGGACTTAGAGGATCCAAAGGCAAAAGAACACGAAAGACAAAAATGGATGACAACAGAGCAGTAGTGGATTTTCAGACACTTCTAACTCAATGTGCAAAAGCTGCTGCAAGCTATGACACAAGGACTGCGAATGAACAACTCAAGCTGATAAGGCAGCACTCATCTCCCCATGGTGATGGAACCCAACGATTAGCTCATTACTTTGCCAATGGCCTTGAAGAACGCTTGATCGCTGCAGTTCCCTTGTACAATCCCATTTCCCTTTTCAGTTATAAGATGTCAGCTGCTGATCTCTTAAAAGCTTACCAGACTTATATCAAAGCATGTCCTTTCAAGCTGATGTCAAATATCTACGCTAACAAAACTATTTTCAAGCTAGCAGAGAAAGTAACGAGGCTTCACATAATCGATTTTGGTATTCTCTATGGCTACCAATGGCCTTCCCTTATCCAGATGCTTGCGAAAAGACCCTCCGGACCTCCAATGCTTCACATTACTGGTATTGAATTTCCCCAATCAGGATTTCGACCATCTGGGAGGCTTGAAGAGACGGGGAACCGCCTAGCGAAATACTGCAAGAGATTCAATGTCCCGTTTGAGTACAACTTCATAGCACAGAGTTGGGACACAATTCAATATGAAGATATCAAACTTGACAGAGATGAGTTGACTTTAGTGAACTGCTTGTACAGGTTAAAGAACTTACATGATGAAACAGTAAGCAACAGTCCAAGGGATACAGTTTTGAAGCTTATCAGGAGAATCAACCCTTATATCTTCATCCATGGAGTGGTTAATGGAGCCTACAATGCACCCTTCTTCAACATACGGTTCCGGGAGGCACTGTACTATTTCTCTTCTTTGTTTGATATGTTTGAGGAGACTTTGCCCAGAGAAGATCAACAGAGACTGCTCTACGAACAAGAGATATTTGGTAGAGATATTATCAATGTGATAGCATGTGAGGGTTCCAGGAGGCTTGAAAGGCCTGAAACATACAAGCAGTGGCACATAAGAAACACTAGAGCTGGGTTCAAGCAGTTACCATTGAACCAGGAGATCGTGAAGGAAGTTAAGAATATTGTAAGGTTAGATTACCATGAGGACTTTGTTGTTGACGAAGATGGCAAGTGGCTCTTGCAGGGATGGAAAGGCCGAATAATGCATGCTATTTCTTGCTGGAAATCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

719

Amino Acids

83.03

Weight (kDa)

6.25

Isoelectric Point (pI)

57.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 347 - 717 2.8e-116 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1239
AccB7I CCANNNNNTGG 1 cut(s) 1756
AccIII TCCGGA 1 cut(s) 1439
AciI CCGC 3 cut(s) 52, 579, 1525
AclWI GGATC 3 cut(s) 248, 972, 985
AcoI YGGCCR 1 cut(s) 53
AcsI RAATTY 4 cut(s) 86, 146, 245, 1472
AcuI CTGAAG 3 cut(s) 183, 404, 920
AfaI GTAC 8 cut(s) 5, 15, 69, 900, 1214, 1568, 1655, 1814
AfiI CCNNNNNNNGG 4 cut(s) 200, 686, 1484, 1756
AjnI CCWGG 2 cut(s) 1937, 2019
AjuI GAANNNNNNNTTGG 4 cut(s) 271, 303, 1473, 1505
AleI CACNNNNGTG 1 cut(s) 240
Alw21I GWGCWC 1 cut(s) 326
Alw26I GTCTC 3 cut(s) 1508, 1841, 1867
AlwI GGATC 3 cut(s) 248, 972, 985
AlwNI CAGNNNCTG 3 cut(s) 901, 1253, 1876
Aor13HI TCCGGA 1 cut(s) 1439
AoxI GGCC 6 cut(s) 53, 432, 1177, 1403, 1952, 2119
ApeKI GCWGC 6 cut(s) 863, 1067, 1070, 1120, 1199, 1250
ApoI RAATTY 4 cut(s) 86, 146, 245, 1472
Asp700I GAANNNNTTC 2 cut(s) 167, 636
AspA2I CCTAGG 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 433, 1442
AsuC2I CCSGG 1 cut(s) 1802
AsuHPI GGTGA 3 cut(s) 491, 707, 1151
AsuNHI GCTAGC 1 cut(s) 1342
AvaII GGWCC 1 cut(s) 1442
AvrII CCTAGG 1 cut(s) 17
BamHI GGATCC 1 cut(s) 977
BanII GRGCYC 1 cut(s) 326
BarI GAAGNNNNNNTAC 2 cut(s) 1347, 1379
BbsI GAAGAC 1 cut(s) 399
Bbv12I GWGCWC 1 cut(s) 326
BbvI GCAGC 6 cut(s) 875, 1054, 1057, 1132, 1186, 1237
BccI CCATC 7 cut(s) 277, 590, 752, 1136, 1504, 2084, 2106
BciT130I CCWGG 2 cut(s) 1939, 2021
BciVI GTATCC 1 cut(s) 1696
BclI TGATCA 2 cut(s) 229, 946
BcnI CCSGG 1 cut(s) 1802
BcoDI GTCTC 3 cut(s) 1508, 1841, 1867
BfaI CTAG 7 cut(s) 18, 470, 582, 629, 1343, 1529, 1989
BfmI CTRYAG 1 cut(s) 1200
BfuI GTATCC 1 cut(s) 1696
BisI GCNGC 8 cut(s) 53, 579, 864, 1068, 1071, 1121, 1200, 1251
BlnI CCTAGG 1 cut(s) 17
BlsI GCNGC 8 cut(s) 54, 580, 865, 1069, 1072, 1122, 1201, 1252
Bme1390I CCNGG 3 cut(s) 1802, 1939, 2021
Bme18I GGWCC 1 cut(s) 1442
BmgT120I GGNCC 2 cut(s) 433, 1442
BmiI GGNNCC 7 cut(s) 666, 979, 1147, 1523, 1768, 1799, 1936
BmrFI CCNGG 3 cut(s) 1802, 1939, 2021
BmrI ACTGGG 1 cut(s) 252
BmsI GCATC 3 cut(s) 36, 369, 1410
BmtI GCTAGC 1 cut(s) 1346
BmuI ACTGGG 1 cut(s) 252
BpiI GAAGAC 1 cut(s) 399
BplI GAGNNNNNCTC 2 cut(s) 326, 358
Bpu10I CCTNAGC 1 cut(s) 601
BpuEI CTTGAG 1 cut(s) 1091
BpuMI CCSGG 1 cut(s) 1802
Bsa29I ATCGAT 1 cut(s) 1374
BsaJI CCNNGG 5 cut(s) 17, 740, 1135, 1697, 1750
BsaWI WCCGGW 1 cut(s) 1439
BsaXI ACNNNNNCTCC 2 cut(s) 1796, 1826
Bsc4I CCNNNNNNNGG 4 cut(s) 200, 686, 1484, 1756
Bse1I ACTGG 2 cut(s) 258, 1468
Bse3DI GCAATG 1 cut(s) 573
BseAI TCCGGA 1 cut(s) 1439
BseBI CCWGG 2 cut(s) 1939, 2021
BseCI ATCGAT 1 cut(s) 1374
BseDI CCNNGG 5 cut(s) 17, 740, 1135, 1697, 1750
BseGI GGATG 8 cut(s) 27, 148, 269, 598, 763, 1018, 1746, 2117
BseLI CCNNNNNNNGG 4 cut(s) 200, 686, 1484, 1756
BseMI GCAATG 1 cut(s) 573
BseMII CTCAG 6 cut(s) 339, 438, 533, 615, 744, 864
BseNI ACTGG 2 cut(s) 258, 1468
BseRI GAGGAG 1 cut(s) 1859
BseXI GCAGC 6 cut(s) 875, 1054, 1057, 1132, 1186, 1237
BseYI CCCAGC 2 cut(s) 74, 1994
BshFI GGCC 6 cut(s) 55, 434, 1179, 1405, 1954, 2121
BshVI ATCGAT 1 cut(s) 1374
BsiHKAI GWGCWC 1 cut(s) 326
BsiSI CCGG 2 cut(s) 1440, 1801
BslFI GGGAC 3 cut(s) 731, 1541, 1604
BslI CCNNNNNNNGG 4 cut(s) 200, 686, 1484, 1756
BsmAI GTCTC 3 cut(s) 1508, 1841, 1867
BsmBI CGTCTC 1 cut(s) 1508
BsmFI GGGAC 3 cut(s) 731, 1541, 1604
BsnI GGCC 6 cut(s) 55, 434, 1179, 1405, 1954, 2121
Bsp1286I GDGCHC 1 cut(s) 326
Bsp13I TCCGGA 1 cut(s) 1439
Bsp1407I TGTACA 2 cut(s) 1212, 1653
Bsp19I CCATGG 2 cut(s) 1135, 1750
BspACI CCGC 3 cut(s) 52, 579, 1525
BspANI GGCC 6 cut(s) 55, 434, 1179, 1405, 1954, 2121
BspCNI CTCAG 6 cut(s) 338, 439, 532, 614, 745, 865
BspDI ATCGAT 1 cut(s) 1374
BspEI TCCGGA 1 cut(s) 1439
BspHI TCATGA 1 cut(s) 292
BspLI GGNNCC 7 cut(s) 666, 979, 1147, 1523, 1768, 1799, 1936
BspMAI CTGCAG 1 cut(s) 1204
BspOI GCTAGC 1 cut(s) 1346
BspPI GGATC 3 cut(s) 248, 972, 985
BsrDI GCAATG 1 cut(s) 573
BsrGI TGTACA 2 cut(s) 1212, 1653
BsrI ACTGG 2 cut(s) 258, 1468
BssECI CCNNGG 5 cut(s) 17, 740, 1135, 1697, 1750
BssT1I CCWWGG 5 cut(s) 17, 740, 1135, 1697, 1750
Bst2UI CCWGG 2 cut(s) 1939, 2021
Bst4CI ACNGT 6 cut(s) 428, 1684, 1694, 1708, 1797, 1812
Bst6I CTCTTC 3 cut(s) 939, 1506, 1828
BstAPI GCANNNNNTGC 1 cut(s) 1067
BstAUI TGTACA 2 cut(s) 1212, 1653
BstC8I GCNNGC 5 cut(s) 416, 1075, 1344, 1425, 2133
BstDEI CTNAG 8 cut(s) 44, 325, 447, 519, 601, 753, 873, 971
BstDSI CCRYGG 2 cut(s) 1135, 1750
BstF5I GGATG 8 cut(s) 27, 148, 269, 598, 763, 1018, 1746, 2117
BstMAI GTCTC 3 cut(s) 1508, 1841, 1867
BstMWI GCNNNNNNNGC 7 cut(s) 440, 745, 860, 1067, 1117, 1775, 1951
BstNI CCWGG 2 cut(s) 1939, 2021
BstNSI RCATGY 4 cut(s) 418, 1293, 1929, 2135
BstSCI CCNGG 3 cut(s) 1800, 1937, 2019
BstSFI CTRYAG 1 cut(s) 1200
BstV1I GCAGC 6 cut(s) 875, 1054, 1057, 1132, 1186, 1237
BstV2I GAAGAC 1 cut(s) 399
BstX2I RGATCY 1 cut(s) 977
BstXI CCANNNNNNTGG 1 cut(s) 1142
BstYI RGATCY 1 cut(s) 977
Bsu15I ATCGAT 1 cut(s) 1374
BsuI GTATCC 1 cut(s) 1696
BsuRI GGCC 6 cut(s) 55, 434, 1179, 1405, 1954, 2121
BsuTUI ATCGAT 1 cut(s) 1374
BtgI CCRYGG 2 cut(s) 1135, 1750
BtsCI GGATG 8 cut(s) 27, 148, 269, 598, 763, 1018, 1746, 2117
BtsI GCAGTG 2 cut(s) 809, 1976
BtsIMutI CAGTG 4 cut(s) 444, 809, 1808, 1976
Cac8I GCNNGC 5 cut(s) 416, 1075, 1344, 1425, 2133
CaiI CAGNNNCTG 3 cut(s) 901, 1253, 1876
CciI TCATGA 1 cut(s) 292
Cfr13I GGNCC 2 cut(s) 433, 1442
ClaI ATCGAT 1 cut(s) 1374
Csp6I GTAC 8 cut(s) 4, 14, 68, 899, 1213, 1567, 1654, 1813
CviQI GTAC 8 cut(s) 4, 14, 68, 899, 1213, 1567, 1654, 1813
DdeI CTNAG 8 cut(s) 44, 325, 447, 519, 601, 753, 873, 971
EaeI YGGCCR 1 cut(s) 53
Eam1104I CTCTTC 3 cut(s) 939, 1506, 1828
EarI CTCTTC 3 cut(s) 939, 1506, 1828
Ecl136II GAGCTC 1 cut(s) 324
Eco130I CCWWGG 5 cut(s) 17, 740, 1135, 1697, 1750
Eco147I AGGCCT 1 cut(s) 1954
Eco24I GRGCYC 1 cut(s) 326
Eco32I GATATC 2 cut(s) 537, 1612
Eco47I GGWCC 1 cut(s) 1442
Eco53kI GAGCTC 1 cut(s) 324
Eco57I CTGAAG 3 cut(s) 183, 404, 920
EcoICRI GAGCTC 1 cut(s) 324
EcoRII CCWGG 2 cut(s) 1937, 2019
EcoRV GATATC 2 cut(s) 537, 1612
EcoT14I CCWWGG 5 cut(s) 17, 740, 1135, 1697, 1750
EcoT22I ATGCAT 1 cut(s) 2133
EcoT38I GRGCYC 1 cut(s) 326
ErhI CCWWGG 5 cut(s) 17, 740, 1135, 1697, 1750
Esp3I CGTCTC 1 cut(s) 1508
FalI AAGNNNNNCTT 2 cut(s) 2087, 2119
FaqI GGGAC 3 cut(s) 731, 1541, 1604
FbaI TGATCA 2 cut(s) 229, 946
Fnu4HI GCNGC 8 cut(s) 53, 579, 864, 1068, 1071, 1121, 1200, 1251
FokI GGATG 8 cut(s) 14, 155, 256, 605, 770, 1025, 1733, 2124
FriOI GRGCYC 1 cut(s) 326
Fsp4HI GCNGC 8 cut(s) 53, 579, 864, 1068, 1071, 1121, 1200, 1251
FspBI CTAG 7 cut(s) 18, 470, 582, 629, 1343, 1529, 1989
GluI GCNGC 8 cut(s) 53, 579, 864, 1068, 1071, 1121, 1200, 1251
GsaI CCCAGC 2 cut(s) 78, 1998
HaeIII GGCC 6 cut(s) 55, 434, 1179, 1405, 1954, 2121
HapII CCGG 2 cut(s) 1440, 1801
HincII GTYRAC 2 cut(s) 1635, 2083
HindII GTYRAC 2 cut(s) 1635, 2083
HindIII AAGCTT 2 cut(s) 1266, 1715
HinfI GANTC 9 cut(s) 224, 299, 632, 719, 767, 869, 941, 1548, 1728
HpaII CCGG 2 cut(s) 1440, 1801
HphI GGTGA 3 cut(s) 491, 707, 1151
Hpy166II GTNNAC 4 cut(s) 968, 1635, 1645, 2083
Hpy188I TCNGA 9 cut(s) 207, 229, 328, 378, 522, 541, 874, 946, 1041
Hpy8I GTNNAC 4 cut(s) 968, 1635, 1645, 2083
HpyAV CCTTC 6 cut(s) 297, 498, 512, 1416, 1792, 2026
HpyCH4III ACNGT 6 cut(s) 428, 1684, 1694, 1708, 1797, 1812
HpyCH4V TGCA 9 cut(s) 27, 414, 1061, 1073, 1202, 1542, 1778, 2107, 2131
HpyF10VI GCNNNNNNNGC 7 cut(s) 440, 745, 860, 1067, 1117, 1775, 1951
HpyF3I CTNAG 8 cut(s) 44, 325, 447, 519, 601, 753, 873, 971
Kpn2I TCCGGA 1 cut(s) 1439
Ksp22I TGATCA 2 cut(s) 229, 946
LmnI GCTCC 5 cut(s) 96, 575, 745, 786, 1766
Lsp1109I GCAGC 6 cut(s) 875, 1054, 1057, 1132, 1186, 1237
LweI GCATC 3 cut(s) 36, 369, 1410
MaeI CTAG 7 cut(s) 18, 470, 582, 629, 1343, 1529, 1989
MaeIII GTNAC 3 cut(s) 217, 1354, 2007
MflI RGATCY 1 cut(s) 977
MhlI GDGCHC 1 cut(s) 326
MluCI AATT 7 cut(s) 86, 118, 146, 166, 245, 1472, 1596
MlyI GAGTC 2 cut(s) 713, 761
MmeI TCCRAC 1 cut(s) 587
Mph1103I ATGCAT 1 cut(s) 2133
MroI TCCGGA 1 cut(s) 1439
MroXI GAANNNNTTC 2 cut(s) 167, 636
MseI TTAA 7 cut(s) 84, 552, 954, 1262, 1661, 1761, 2040
MslI CAYNNNNRTG 3 cut(s) 137, 240, 1140
MspA1I CMGCKG 2 cut(s) 866, 1250
MspI CCGG 2 cut(s) 1440, 1801
MspR9I CCNGG 3 cut(s) 1802, 1939, 2021
MvaI CCWGG 2 cut(s) 1939, 2021
MwoI GCNNNNNNNGC 7 cut(s) 440, 745, 860, 1067, 1117, 1775, 1951
NciI CCSGG 1 cut(s) 1802
NcoI CCATGG 2 cut(s) 1135, 1750
NheI GCTAGC 1 cut(s) 1342
NlaIV GGNNCC 7 cut(s) 666, 979, 1147, 1523, 1768, 1799, 1936
NsiI ATGCAT 1 cut(s) 2133
NspI RCATGY 4 cut(s) 418, 1293, 1929, 2135
OliI CACNNNNGTG 1 cut(s) 240
PaeI GCATGC 2 cut(s) 418, 2135
PagI TCATGA 1 cut(s) 292
PceI AGGCCT 1 cut(s) 1954
PdmI GAANNNNTTC 2 cut(s) 167, 636
PfeI GAWTC 7 cut(s) 224, 299, 632, 869, 941, 1548, 1728
PflMI CCANNNNNTGG 1 cut(s) 1756
PfoI TCCNGGA 2 cut(s) 1800, 1937
PkrI GCNGC 8 cut(s) 54, 580, 865, 1069, 1072, 1122, 1201, 1252
PleI GAGTC 2 cut(s) 713, 761
PpsI GAGTC 2 cut(s) 713, 761
PsiI TTATAA 1 cut(s) 1239
Psp124BI GAGCTC 1 cut(s) 326
Psp6I CCWGG 2 cut(s) 1937, 2019
PspFI CCCAGC 2 cut(s) 74, 1994
PspGI CCWGG 2 cut(s) 1937, 2019
PspN4I GGNNCC 7 cut(s) 666, 979, 1147, 1523, 1768, 1799, 1936
PspPI GGNCC 2 cut(s) 433, 1442
PsrI GAACNNNNNNTAC 2 cut(s) 1637, 1669
PstI CTGCAG 1 cut(s) 1204
PstNI CAGNNNCTG 3 cut(s) 901, 1253, 1876
PsuI RGATCY 1 cut(s) 977
PvuII CAGCTG 2 cut(s) 866, 1250
RsaI GTAC 8 cut(s) 5, 15, 69, 900, 1214, 1568, 1655, 1814
RsaNI GTAC 8 cut(s) 4, 14, 68, 899, 1213, 1567, 1654, 1813
RseI CAYNNNNRTG 3 cut(s) 137, 240, 1140
SacI GAGCTC 1 cut(s) 326
SaqAI TTAA 7 cut(s) 84, 552, 954, 1262, 1661, 1761, 2040
SatI GCNGC 8 cut(s) 53, 579, 864, 1068, 1071, 1121, 1200, 1251
Sau96I GGNCC 2 cut(s) 433, 1442
SchI GAGTC 2 cut(s) 713, 761
ScrFI CCNGG 3 cut(s) 1802, 1939, 2021
SduI GDGCHC 1 cut(s) 326
SfaNI GCATC 3 cut(s) 36, 369, 1410
SfcI CTRYAG 1 cut(s) 1200
SinI GGWCC 1 cut(s) 1442
SmiMI CAYNNNNRTG 3 cut(s) 137, 240, 1140
SmlI CTYRAG 1 cut(s) 1106
SmoI CTYRAG 1 cut(s) 1106
SphI GCATGC 2 cut(s) 418, 2135
Sse9I AATT 7 cut(s) 86, 118, 146, 166, 245, 1472, 1596
SseBI AGGCCT 1 cut(s) 1954
SsiI CCGC 3 cut(s) 52, 579, 1525
SspI AATATT 1 cut(s) 2047
SspMI CTAG 7 cut(s) 18, 470, 582, 629, 1343, 1529, 1989
SstI GAGCTC 1 cut(s) 326
StuI AGGCCT 1 cut(s) 1954
StyD4I CCNGG 3 cut(s) 1800, 1937, 2019
StyI CCWWGG 5 cut(s) 17, 740, 1135, 1697, 1750
TaaI ACNGT 6 cut(s) 428, 1684, 1694, 1708, 1797, 1812
TaqI TCGA 2 cut(s) 1374, 1492
TasI AATT 7 cut(s) 86, 118, 146, 166, 245, 1472, 1596
TatI WGTACW 5 cut(s) 3, 1212, 1566, 1653, 1812
TauI GCSGC 2 cut(s) 55, 581
TfiI GAWTC 7 cut(s) 224, 299, 632, 869, 941, 1548, 1728
Tru1I TTAA 7 cut(s) 84, 552, 954, 1262, 1661, 1761, 2040
Tru9I TTAA 7 cut(s) 84, 552, 954, 1262, 1661, 1761, 2040
TscAI CASTG 4 cut(s) 451, 809, 1815, 1976
TseI GCWGC 6 cut(s) 863, 1067, 1070, 1120, 1199, 1250
TspRI CASTG 4 cut(s) 451, 809, 1815, 1976
Van91I CCANNNNNTGG 1 cut(s) 1756
VpaK11BI GGWCC 1 cut(s) 1442
XapI RAATTY 4 cut(s) 86, 146, 245, 1472
XbaI TCTAGA 1 cut(s) 628
XceI RCATGY 4 cut(s) 418, 1293, 1929, 2135
XmaJI CCTAGG 1 cut(s) 17
XmnI GAANNNNTTC 2 cut(s) 167, 636
XspI CTAG 7 cut(s) 18, 470, 582, 629, 1343, 1529, 1989
Zsp2I ATGCAT 1 cut(s) 2133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.