Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000175

Physical Location & Seq

Genomic Coordinates Forward (+)

19333015 .. 19333512

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00015580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGCGTGATGAGACGGTGATGGAGAACTCTCCGAGAGATGCGGTCCTAAAGTTGATCAAGAATATAAACCCCAACCTTTTCATTCATGGGATTATCAATGGGACACACAATACACCCTTCTTTGCTACACGGTTCAGAGAGGCACTCTTGCACTACTATGCAGTGTTTGATATGTTCGAAGCAACCATTCCTAGTGAAGATAATCGTCGGATGATGTTGGAGAAAGACTTCCATGGTAGAGACATAATGAATATCATAGCATGCGAGGGAGTGGAAAGAGTTGAAAGGCCTGAGACTTACAAGAAGTGGCAGATCAGGAATGTGAGGGCTGGGTTGAAGCAACTTCCACTGGACCAGCAACTATTGAAGAAAGCTAAGAAATTGTCGGAGGTAATGGGTTATCATAATGATTTTAGACTTGATGAAGATGGGCATTGGATGCTGCATGGATGGAAAGGAAGGATCATCACGGCTCTTTCATTTTGGAAACCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

165

Amino Acids

19.48

Weight (kDa)

9.01

Isoelectric Point (pI)

39.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	2 - 163	3.8e-44	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca	FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica	MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica	Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis	pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis	RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata	RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora	Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa	Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha	Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana	Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	41
AclWI	GGATC	1 cut(s)	470
AgsI	TTSAA	3 cut(s)	284, 337, 367
AluBI	AGCT	1 cut(s)	374
AluI	AGCT	1 cut(s)	374
Alw26I	GTCTC	3 cut(s)	5, 234, 287
AlwI	GGATC	1 cut(s)	470
AoxI	GGCC	1 cut(s)	287
ApeKI	GCWGC	1 cut(s)	442
Asp700I	GAANNNNTTC	1 cut(s)	227
AspS9I	GGNCC	2 cut(s)	43, 352
AsuHPI	GGTGA	1 cut(s)	28
AsuII	TTCGAA	1 cut(s)	177
AvaII	GGWCC	2 cut(s)	43, 352
BbvI	GCAGC	1 cut(s)	429
BccI	CCATC	3 cut(s)	13, 422, 444
BceAI	ACGGC	1 cut(s)	486
BclI	TGATCA	1 cut(s)	54
BcoDI	GTCTC	3 cut(s)	5, 234, 287
BfaI	CTAG	2 cut(s)	192, 496
BisI	GCNGC	1 cut(s)	443
BlsI	GCNGC	1 cut(s)	444
Bme18I	GGWCC	2 cut(s)	43, 352
BmgT120I	GGNCC	2 cut(s)	43, 352
BmsI	GCATC	2 cut(s)	28, 429
BplI	GAGNNNNNCTC	2 cut(s)	129, 161
Bpu14I	TTCGAA	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	232
Bse1I	ACTGG	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	232
BseGI	GGATG	3 cut(s)	216, 444, 455
BseMII	CTCAG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	354
BseXI	GCAGC	1 cut(s)	429
BseYI	CCCAGC	1 cut(s)	329
BshFI	GGCC	1 cut(s)	289
BslFI	GGGAC	1 cut(s)	115
BsmAI	GTCTC	3 cut(s)	5, 234, 287
BsmBI	CGTCTC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	289
Bsp119I	TTCGAA	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	54, 312, 462
Bsp19I	CCATGG	1 cut(s)	232
BspACI	CCGC	1 cut(s)	41
BspANI	GGCC	1 cut(s)	289
BspCNI	CTCAG	1 cut(s)	283
BspPI	GGATC	1 cut(s)	470
BspT104I	TTCGAA	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	354
BssECI	CCNNGG	1 cut(s)	232
BssMI	GATC	3 cut(s)	54, 312, 462
BssT1I	CCWWGG	1 cut(s)	232
Bst4CI	ACNGT	2 cut(s)	16, 132
BstAPI	GCANNNNNTGC	1 cut(s)	439
BstBI	TTCGAA	1 cut(s)	177
BstC8I	GCNNGC	1 cut(s)	262
BstDEI	CTNAG	2 cut(s)	291, 375
BstDSI	CCRYGG	1 cut(s)	232
BstF5I	GGATG	3 cut(s)	216, 444, 455
BstKTI	GATC	3 cut(s)	57, 315, 465
BstMAI	GTCTC	3 cut(s)	5, 234, 287
BstMBI	GATC	3 cut(s)	54, 312, 462
BstMWI	GCNNNNNNNGC	1 cut(s)	439
BstNSI	RCATGY	1 cut(s)	264
BstV1I	GCAGC	1 cut(s)	429
BsuRI	GGCC	1 cut(s)	289
BtgI	CCRYGG	1 cut(s)	232
BtsCI	GGATG	3 cut(s)	216, 444, 455
BtsI	GCAGTG	1 cut(s)	168
BtsIMutI	CAGTG	2 cut(s)	168, 347
Cac8I	GCNNGC	1 cut(s)	262
Cfr13I	GGNCC	2 cut(s)	43, 352
CviAII	CATG	4 cut(s)	86, 233, 261, 446
CviJI	RGCY	4 cut(s)	289, 329, 374, 473
CviKI_1	RGCY	4 cut(s)	289, 329, 374, 473
DdeI	CTNAG	2 cut(s)	291, 375
DpnI	GATC	3 cut(s)	56, 314, 464
DpnII	GATC	3 cut(s)	54, 312, 462
Eco130I	CCWWGG	1 cut(s)	232
Eco147I	AGGCCT	1 cut(s)	289
Eco47I	GGWCC	2 cut(s)	43, 352
EcoT14I	CCWWGG	1 cut(s)	232
ErhI	CCWWGG	1 cut(s)	232
Esp3I	CGTCTC	1 cut(s)	5
FaeI	CATG	4 cut(s)	89, 236, 264, 449
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	4 cut(s)	85, 232, 260, 445
FbaI	TGATCA	1 cut(s)	54
Fnu4HI	GCNGC	1 cut(s)	443
FokI	GGATG	3 cut(s)	223, 451, 462
Fsp4HI	GCNGC	1 cut(s)	443
FspBI	CTAG	2 cut(s)	192, 496
GluI	GCNGC	1 cut(s)	443
GsaI	CCCAGC	1 cut(s)	333
HaeIII	GGCC	1 cut(s)	289
Hin1II	CATG	4 cut(s)	89, 236, 264, 449
HphI	GGTGA	1 cut(s)	28
Hpy188I	TCNGA	4 cut(s)	33, 137, 210, 388
Hpy188III	TCNNGA	2 cut(s)	58, 316
Hpy99I	CGWCG	1 cut(s)	210
HpyAV	CCTTC	2 cut(s)	127, 453
HpyCH4III	ACNGT	2 cut(s)	16, 132
HpyCH4V	TGCA	3 cut(s)	151, 161, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	439
HpyF3I	CTNAG	2 cut(s)	291, 375
Hsp92II	CATG	4 cut(s)	89, 236, 264, 449
Ksp22I	TGATCA	1 cut(s)	54
Kzo9I	GATC	3 cut(s)	54, 312, 462
LpnPI	CCDG	5 cut(s)	301, 303, 315, 335, 368
Lsp1109I	GCAGC	1 cut(s)	429
LweI	GCATC	2 cut(s)	28, 429
MaeI	CTAG	2 cut(s)	192, 496
MalI	GATC	3 cut(s)	56, 314, 464
MboI	GATC	3 cut(s)	54, 312, 462
MboII	GAAGA	3 cut(s)	209, 379, 437
MluCI	AATT	1 cut(s)	380
MmeI	TCCRAC	3 cut(s)	188, 198, 366
MnlI	CCTC	4 cut(s)	133, 259, 318, 382
MroXI	GAANNNNTTC	1 cut(s)	227
MslI	CAYNNNNRTG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	439
NcoI	CCATGG	1 cut(s)	232
NdeII	GATC	3 cut(s)	54, 312, 462
NlaIII	CATG	4 cut(s)	89, 236, 264, 449
NspI	RCATGY	1 cut(s)	264
NspV	TTCGAA	1 cut(s)	177
PaeI	GCATGC	1 cut(s)	264
PceI	AGGCCT	1 cut(s)	289
PdmI	GAANNNNTTC	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	444
PspFI	CCCAGC	1 cut(s)	329
PspPI	GGNCC	2 cut(s)	43, 352
RseI	CAYNNNNRTG	1 cut(s)	156
SatI	GCNGC	1 cut(s)	443
Sau3AI	GATC	3 cut(s)	54, 312, 462
Sau96I	GGNCC	2 cut(s)	43, 352
SetI	ASST	4 cut(s)	78, 376, 393, 493
SfaNI	GCATC	2 cut(s)	28, 429
SfuI	TTCGAA	1 cut(s)	177
SinI	GGWCC	2 cut(s)	43, 352
SmiMI	CAYNNNNRTG	1 cut(s)	156
SphI	GCATGC	1 cut(s)	264
Sse9I	AATT	1 cut(s)	380
SseBI	AGGCCT	1 cut(s)	289
SsiI	CCGC	1 cut(s)	41
SspMI	CTAG	2 cut(s)	192, 496
StuI	AGGCCT	1 cut(s)	289
StyI	CCWWGG	1 cut(s)	232
TaaI	ACNGT	2 cut(s)	16, 132
TaqI	TCGA	1 cut(s)	177
TasI	AATT	1 cut(s)	380
TscAI	CASTG	2 cut(s)	168, 354
TseI	GCWGC	1 cut(s)	442
TspDTI	ATGAA	5 cut(s)	70, 74, 263, 438, 468
TspRI	CASTG	2 cut(s)	168, 354
VpaK11BI	GGWCC	2 cut(s)	43, 352
XceI	RCATGY	1 cut(s)	264
XmnI	GAANNNNTTC	1 cut(s)	227
XspI	CTAG	2 cut(s)	192, 496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.