Reverse transcriptase (RNA-dependent DNA polymerase)
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| GRAS | PF03514 | 330 - 700 | 1e-121 | GRAS domain family |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1468 |
| Acc36I | ACCTGC | 1 cut(s) | 1912 |
| AccB1I | GGYRCC | 1 cut(s) | 1145 |
| AccII | CGCG | 2 cut(s) | 1133, 1135 |
| AccIII | TCCGGA | 1 cut(s) | 484 |
| AciI | CCGC | 2 cut(s) | 1135, 1819 |
| AclWI | GGATC | 3 cut(s) | 476, 489, 1351 |
| AcoI | YGGCCR | 1 cut(s) | 2041 |
| AcsI | RAATTY | 3 cut(s) | 50, 577, 1930 |
| AcuI | CTGAAG | 1 cut(s) | 918 |
| AcyI | GRCGYC | 1 cut(s) | 1465 |
| AfaI | GTAC | 2 cut(s) | 234, 242 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 42, 1427, 1530, 1531, 1549 |
| AflII | CTTAAG | 1 cut(s) | 1658 |
| AgeI | ACCGGT | 1 cut(s) | 1599 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1464 |
| AjnI | CCWGG | 3 cut(s) | 1215, 1378, 1426 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 521, 553, 1416, 1448 |
| Alw21I | GWGCWC | 3 cut(s) | 393, 989, 1009 |
| Alw26I | GTCTC | 3 cut(s) | 31, 1451, 1616 |
| Alw44I | GTGCAC | 3 cut(s) | 389, 985, 1005 |
| AlwI | GGATC | 3 cut(s) | 476, 489, 1351 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 692, 1196, 1972 |
| Aor13HI | TCCGGA | 1 cut(s) | 484 |
| AoxI | GGCC | 5 cut(s) | 61, 1123, 1346, 1898, 2041 |
| ApaLI | GTGCAC | 3 cut(s) | 389, 985, 1005 |
| ApeKI | GCWGC | 7 cut(s) | 317, 791, 916, 1066, 1193, 1951, 2053 |
| ApoI | RAATTY | 3 cut(s) | 50, 577, 1930 |
| AsiGI | ACCGGT | 1 cut(s) | 1599 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 329 |
| AspLEI | GCGC | 1 cut(s) | 1135 |
| AspS9I | GGNCC | 3 cut(s) | 62, 355, 1385 |
| AsuHPI | GGTGA | 4 cut(s) | 1097, 1639, 1645, 1834 |
| AsuNHI | GCTAGC | 1 cut(s) | 1285 |
| AvaII | GGWCC | 2 cut(s) | 355, 1385 |
| BaeGI | GKGCMC | 3 cut(s) | 393, 989, 1009 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 699, 732 |
| BalI | TGGCCA | 1 cut(s) | 2043 |
| BamHI | GGATCC | 1 cut(s) | 481 |
| BanI | GGYRCC | 1 cut(s) | 1145 |
| BauI | CACGAG | 1 cut(s) | 1803 |
| BbsI | GAAGAC | 5 cut(s) | 273, 498, 513, 737, 1994 |
| Bbv12I | GWGCWC | 3 cut(s) | 393, 989, 1009 |
| BbvI | GCAGC | 7 cut(s) | 304, 778, 928, 1078, 1180, 1963, 2040 |
| BceAI | ACGGC | 1 cut(s) | 463 |
| BciT130I | CCWGG | 3 cut(s) | 1217, 1380, 1428 |
| BcoDI | GTCTC | 3 cut(s) | 31, 1451, 1616 |
| BfaI | CTAG | 4 cut(s) | 168, 381, 1286, 2107 |
| BfmI | CTRYAG | 3 cut(s) | 795, 1440, 2054 |
| BfrI | CTTAAG | 1 cut(s) | 1658 |
| BfuAI | ACCTGC | 1 cut(s) | 1912 |
| BisI | GCNGC | 7 cut(s) | 318, 792, 917, 1067, 1194, 1952, 2054 |
| BlpI | GCTNAGC | 1 cut(s) | 864 |
| BlsI | GCNGC | 7 cut(s) | 319, 793, 918, 1068, 1195, 1953, 2055 |
| Bme1390I | CCNGG | 3 cut(s) | 1217, 1380, 1428 |
| Bme18I | GGWCC | 2 cut(s) | 355, 1385 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1464 |
| BmgT120I | GGNCC | 3 cut(s) | 62, 355, 1385 |
| BmiI | GGNNCC | 3 cut(s) | 357, 483, 1147 |
| BmrFI | CCNGG | 3 cut(s) | 1217, 1380, 1428 |
| BmrI | ACTGGG | 1 cut(s) | 59 |
| BmsI | GCATC | 8 cut(s) | 158, 552, 648, 686, 850, 1078, 1639, 2040 |
| BmtI | GCTAGC | 1 cut(s) | 1289 |
| BmuI | ACTGGG | 1 cut(s) | 59 |
| BpiI | GAAGAC | 5 cut(s) | 273, 498, 513, 737, 1994 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1740, 1772 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1392 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 864 |
| BpuEI | CTTGAG | 4 cut(s) | 221, 648, 1037, 1808 |
| BsaHI | GRCGYC | 1 cut(s) | 1465 |
| BsaI | GGTCTC | 1 cut(s) | 1451 |
| BsaJI | CCNNGG | 3 cut(s) | 36, 58, 1081 |
| BsaWI | WCCGGW | 3 cut(s) | 484, 1460, 1599 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 42, 1427, 1530, 1531, 1549 |
| Bse118I | RCCGGY | 1 cut(s) | 1599 |
| Bse1I | ACTGG | 4 cut(s) | 65, 137, 502, 1887 |
| Bse3DI | GCAATG | 1 cut(s) | 1518 |
| BseAI | TCCGGA | 1 cut(s) | 484 |
| BseBI | CCWGG | 3 cut(s) | 1217, 1380, 1428 |
| BseDI | CCNNGG | 3 cut(s) | 36, 58, 1081 |
| BseGI | GGATG | 4 cut(s) | 149, 226, 2055, 2066 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 42, 1427, 1530, 1531, 1549 |
| BseMI | GCAATG | 1 cut(s) | 1518 |
| BseMII | CTCAG | 5 cut(s) | 312, 393, 549, 672, 1563 |
| BseNI | ACTGG | 4 cut(s) | 65, 137, 502, 1887 |
| BseRI | GAGGAG | 1 cut(s) | 1748 |
| BseSI | GKGCMC | 3 cut(s) | 393, 989, 1009 |
| BseXI | GCAGC | 7 cut(s) | 304, 778, 928, 1078, 1180, 1963, 2040 |
| BseYI | CCCAGC | 1 cut(s) | 1940 |
| BsgI | GTGCAG | 1 cut(s) | 1202 |
| Bsh1236I | CGCG | 2 cut(s) | 1133, 1135 |
| BshFI | GGCC | 5 cut(s) | 63, 1125, 1348, 1900, 2043 |
| BshNI | GGYRCC | 1 cut(s) | 1145 |
| BshTI | ACCGGT | 1 cut(s) | 1599 |
| BsiHKAI | GWGCWC | 3 cut(s) | 393, 989, 1009 |
| BsiSI | CCGG | 3 cut(s) | 485, 1461, 1600 |
| BslFI | GGGAC | 4 cut(s) | 815, 1354, 1484, 1726 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 42, 1427, 1530, 1531, 1549 |
| BsmAI | GTCTC | 3 cut(s) | 31, 1451, 1616 |
| BsmBI | CGTCTC | 1 cut(s) | 1616 |
| BsmFI | GGGAC | 4 cut(s) | 815, 1354, 1484, 1726 |
| BsnI | GGCC | 5 cut(s) | 63, 1125, 1348, 1900, 2043 |
| Bso31I | GGTCTC | 1 cut(s) | 1451 |
| Bsp1286I | GDGCHC | 3 cut(s) | 393, 989, 1009 |
| Bsp13I | TCCGGA | 1 cut(s) | 484 |
| Bsp143I | GATC | 3 cut(s) | 160, 481, 1356 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 864 |
| Bsp19I | CCATGG | 3 cut(s) | 36, 58, 1081 |
| BspACI | CCGC | 2 cut(s) | 1135, 1819 |
| BspANI | GGCC | 5 cut(s) | 63, 1125, 1348, 1900, 2043 |
| BspCNI | CTCAG | 5 cut(s) | 313, 394, 550, 673, 1564 |
| BspEI | TCCGGA | 1 cut(s) | 484 |
| BspFNI | CGCG | 2 cut(s) | 1133, 1135 |
| BspHI | TCATGA | 3 cut(s) | 121, 856, 1278 |
| BspLI | GGNNCC | 3 cut(s) | 357, 483, 1147 |
| BspMAI | CTGCAG | 1 cut(s) | 2058 |
| BspMI | ACCTGC | 1 cut(s) | 1912 |
| BspOI | GCTAGC | 1 cut(s) | 1289 |
| BspPI | GGATC | 3 cut(s) | 476, 489, 1351 |
| BspT107I | GGYRCC | 1 cut(s) | 1145 |
| BspTI | CTTAAG | 1 cut(s) | 1658 |
| BspTNI | GGTCTC | 1 cut(s) | 1451 |
| BsrDI | GCAATG | 1 cut(s) | 1518 |
| BsrFI | RCCGGY | 1 cut(s) | 1599 |
| BsrI | ACTGG | 4 cut(s) | 65, 137, 502, 1887 |
| BssAI | RCCGGY | 1 cut(s) | 1599 |
| BssECI | CCNNGG | 3 cut(s) | 36, 58, 1081 |
| BssMI | GATC | 3 cut(s) | 160, 481, 1356 |
| BssNI | GRCGYC | 1 cut(s) | 1465 |
| BssSI | CACGAG | 1 cut(s) | 1803 |
| BssT1I | CCWWGG | 3 cut(s) | 36, 58, 1081 |
| Bst2BI | CACGAG | 1 cut(s) | 1803 |
| Bst2UI | CCWGG | 3 cut(s) | 1217, 1380, 1428 |
| Bst4CI | ACNGT | 5 cut(s) | 302, 443, 1627, 1640, 1776 |
| Bst6I | CTCTTC | 2 cut(s) | 762, 1449 |
| BstACI | GRCGYC | 1 cut(s) | 1465 |
| BstAFI | CTTAAG | 1 cut(s) | 1658 |
| BstC8I | GCNNGC | 3 cut(s) | 601, 1234, 1287 |
| BstDEI | CTNAG | 9 cut(s) | 321, 402, 558, 640, 681, 864, 1392, 1471, 1572 |
| BstDSI | CCRYGG | 3 cut(s) | 36, 58, 1081 |
| BstF5I | GGATG | 4 cut(s) | 149, 226, 2055, 2066 |
| BstFNI | CGCG | 2 cut(s) | 1133, 1135 |
| BstHHI | GCGC | 1 cut(s) | 1135 |
| BstKTI | GATC | 3 cut(s) | 163, 484, 1359 |
| BstMAI | GTCTC | 3 cut(s) | 31, 1451, 1616 |
| BstMBI | GATC | 3 cut(s) | 160, 481, 1356 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 314, 925, 1063, 1075, 1139, 1295 |
| BstNI | CCWGG | 3 cut(s) | 1217, 1380, 1428 |
| BstNSI | RCATGY | 2 cut(s) | 292, 1236 |
| BstSCI | CCNGG | 3 cut(s) | 1215, 1378, 1426 |
| BstSFI | CTRYAG | 3 cut(s) | 795, 1440, 2054 |
| BstSLI | GKGCMC | 3 cut(s) | 393, 989, 1009 |
| BstUI | CGCG | 2 cut(s) | 1133, 1135 |
| BstV1I | GCAGC | 7 cut(s) | 304, 778, 928, 1078, 1180, 1963, 2040 |
| BstV2I | GAAGAC | 5 cut(s) | 273, 498, 513, 737, 1994 |
| BstX2I | RGATCY | 1 cut(s) | 481 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 37, 1379 |
| BstYI | RGATCY | 1 cut(s) | 481 |
| BsuRI | GGCC | 5 cut(s) | 63, 1125, 1348, 1900, 2043 |
| BtgI | CCRYGG | 3 cut(s) | 36, 58, 1081 |
| BtsCI | GGATG | 4 cut(s) | 149, 226, 2055, 2066 |
| BtsI | GCAGTG | 1 cut(s) | 1922 |
| BtsIMutI | CAGTG | 2 cut(s) | 1772, 1922 |
| BveI | ACCTGC | 1 cut(s) | 1912 |
| Cac8I | GCNNGC | 3 cut(s) | 601, 1234, 1287 |
| CaiI | CAGNNNCTG | 3 cut(s) | 692, 1196, 1972 |
| CciI | TCATGA | 3 cut(s) | 121, 856, 1278 |
| CfoI | GCGC | 1 cut(s) | 1135 |
| Cfr10I | RCCGGY | 1 cut(s) | 1599 |
| Cfr13I | GGNCC | 3 cut(s) | 62, 355, 1385 |
| CsiI | ACCWGGT | 3 cut(s) | 1215, 1378, 1426 |
| Csp6I | GTAC | 2 cut(s) | 233, 241 |
| CspAI | ACCGGT | 1 cut(s) | 1599 |
| CviQI | GTAC | 2 cut(s) | 233, 241 |
| DdeI | CTNAG | 9 cut(s) | 321, 402, 558, 640, 681, 864, 1392, 1471, 1572 |
| DpnI | GATC | 3 cut(s) | 162, 483, 1358 |
| DpnII | GATC | 3 cut(s) | 160, 481, 1356 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1464 |
| EaeI | YGGCCR | 1 cut(s) | 2041 |
| Eam1104I | CTCTTC | 2 cut(s) | 762, 1449 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1464 |
| EarI | CTCTTC | 2 cut(s) | 762, 1449 |
| Eco130I | CCWWGG | 3 cut(s) | 36, 58, 1081 |
| Eco147I | AGGCCT | 1 cut(s) | 1900 |
| Eco31I | GGTCTC | 1 cut(s) | 1451 |
| Eco32I | GATATC | 1 cut(s) | 211 |
| Eco47I | GGWCC | 2 cut(s) | 355, 1385 |
| Eco57I | CTGAAG | 1 cut(s) | 918 |
| EcoO109I | RGGNCCY | 1 cut(s) | 355 |
| EcoRII | CCWGG | 3 cut(s) | 1215, 1378, 1426 |
| EcoRV | GATATC | 1 cut(s) | 211 |
| EcoT14I | CCWWGG | 3 cut(s) | 36, 58, 1081 |
| ErhI | CCWWGG | 3 cut(s) | 36, 58, 1081 |
| Esp3I | CGTCTC | 1 cut(s) | 1616 |
| FaqI | GGGAC | 4 cut(s) | 815, 1354, 1484, 1726 |
| FauI | CCCGC | 1 cut(s) | 1812 |
| Fnu4HI | GCNGC | 7 cut(s) | 318, 792, 917, 1067, 1194, 1952, 2054 |
| FokI | GGATG | 4 cut(s) | 136, 213, 2062, 2073 |
| Fsp4HI | GCNGC | 7 cut(s) | 318, 792, 917, 1067, 1194, 1952, 2054 |
| FspBI | CTAG | 4 cut(s) | 168, 381, 1286, 2107 |
| GlaI | GCGC | 1 cut(s) | 1134 |
| GluI | GCNGC | 7 cut(s) | 318, 792, 917, 1067, 1194, 1952, 2054 |
| GsaI | CCCAGC | 1 cut(s) | 1944 |
| HaeIII | GGCC | 5 cut(s) | 63, 1125, 1348, 1900, 2043 |
| HapII | CCGG | 3 cut(s) | 485, 1461, 1600 |
| HhaI | GCGC | 1 cut(s) | 1135 |
| Hin1I | GRCGYC | 1 cut(s) | 1465 |
| Hin6I | GCGC | 1 cut(s) | 1133 |
| HinP1I | GCGC | 1 cut(s) | 1133 |
| HincII | GTYRAC | 1 cut(s) | 933 |
| HindII | GTYRAC | 1 cut(s) | 933 |
| HindIII | AAGCTT | 2 cut(s) | 866, 1394 |
| HinfI | GANTC | 9 cut(s) | 125, 173, 419, 518, 548, 683, 733, 884, 1338 |
| HpaII | CCGG | 3 cut(s) | 485, 1461, 1600 |
| HphI | GGTGA | 4 cut(s) | 1097, 1639, 1645, 1834 |
| Hpy166II | GTNNAC | 7 cut(s) | 391, 933, 987, 1007, 1046, 1385, 1636 |
| Hpy8I | GTNNAC | 7 cut(s) | 391, 933, 987, 1007, 1046, 1385, 1636 |
| Hpy99I | CGWCG | 2 cut(s) | 529, 1470 |
| HpyAV | CCTTC | 8 cut(s) | 346, 715, 893, 899, 937, 1738, 1871, 1972 |
| HpyCH4III | ACNGT | 5 cut(s) | 302, 443, 1627, 1640, 1776 |
| HpyCH4IV | ACGT | 2 cut(s) | 1363, 1465 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 314, 925, 1063, 1075, 1139, 1295 |
| HpyF3I | CTNAG | 9 cut(s) | 321, 402, 558, 640, 681, 864, 1392, 1471, 1572 |
| HpySE526I | ACGT | 2 cut(s) | 1363, 1465 |
| Hsp92I | GRCGYC | 1 cut(s) | 1465 |
| HspAI | GCGC | 1 cut(s) | 1133 |
| Kpn2I | TCCGGA | 1 cut(s) | 484 |
| Kzo9I | GATC | 3 cut(s) | 160, 481, 1356 |
| LmnI | GCTCC | 1 cut(s) | 1729 |
| Lsp1109I | GCAGC | 7 cut(s) | 304, 778, 928, 1078, 1180, 1963, 2040 |
| LweI | GCATC | 8 cut(s) | 158, 552, 648, 686, 850, 1078, 1639, 2040 |
| MabI | ACCWGGT | 3 cut(s) | 1215, 1378, 1426 |
| MaeI | CTAG | 4 cut(s) | 168, 381, 1286, 2107 |
| MaeII | ACGT | 2 cut(s) | 1363, 1465 |
| MaeIII | GTNAC | 4 cut(s) | 443, 920, 959, 1251 |
| MalI | GATC | 3 cut(s) | 162, 483, 1358 |
| MboI | GATC | 3 cut(s) | 160, 481, 1356 |
| MfeI | CAATTG | 2 cut(s) | 653, 1588 |
| MflI | RGATCY | 1 cut(s) | 481 |
| MhlI | GDGCHC | 3 cut(s) | 393, 989, 1009 |
| MlsI | TGGCCA | 1 cut(s) | 2043 |
| MluCI | AATT | 9 cut(s) | 50, 577, 653, 1256, 1545, 1560, 1588, 1674, 1930 |
| MluNI | TGGCCA | 1 cut(s) | 2043 |
| MlyI | GAGTC | 4 cut(s) | 527, 692, 727, 893 |
| MmeI | TCCRAC | 1 cut(s) | 1384 |
| Mox20I | TGGCCA | 1 cut(s) | 2043 |
| MroI | TCCGGA | 1 cut(s) | 484 |
| MroXI | GAANNNNTTC | 1 cut(s) | 329 |
| MscI | TGGCCA | 1 cut(s) | 2043 |
| MseI | TTAA | 7 cut(s) | 345, 462, 1205, 1227, 1604, 1659, 1860 |
| MslI | CAYNNNNRTG | 1 cut(s) | 1086 |
| Msp20I | TGGCCA | 1 cut(s) | 2043 |
| MspA1I | CMGCKG | 2 cut(s) | 1193, 1819 |
| MspCI | CTTAAG | 1 cut(s) | 1658 |
| MspI | CCGG | 3 cut(s) | 485, 1461, 1600 |
| MspR9I | CCNGG | 3 cut(s) | 1217, 1380, 1428 |
| MunI | CAATTG | 2 cut(s) | 653, 1588 |
| MvaI | CCWGG | 3 cut(s) | 1217, 1380, 1428 |
| MvnI | CGCG | 2 cut(s) | 1133, 1135 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 314, 925, 1063, 1075, 1139, 1295 |
| NcoI | CCATGG | 3 cut(s) | 36, 58, 1081 |
| NdeII | GATC | 3 cut(s) | 160, 481, 1356 |
| NheI | GCTAGC | 1 cut(s) | 1285 |
| NlaIV | GGNNCC | 3 cut(s) | 357, 483, 1147 |
| NmuCI | GTSAC | 1 cut(s) | 1251 |
| NspI | RCATGY | 2 cut(s) | 292, 1236 |
| PaeI | GCATGC | 1 cut(s) | 1236 |
| PagI | TCATGA | 3 cut(s) | 121, 856, 1278 |
| PceI | AGGCCT | 1 cut(s) | 1900 |
| PdmI | GAANNNNTTC | 1 cut(s) | 329 |
| PfeI | GAWTC | 5 cut(s) | 125, 173, 419, 548, 1338 |
| PflFI | GACNNNGTC | 1 cut(s) | 1993 |
| PinAI | ACCGGT | 1 cut(s) | 1599 |
| PkrI | GCNGC | 7 cut(s) | 319, 793, 918, 1068, 1195, 1953, 2055 |
| PleI | GAGTC | 4 cut(s) | 526, 691, 727, 892 |
| PpsI | GAGTC | 4 cut(s) | 526, 691, 727, 892 |
| PpuMI | RGGWCCY | 1 cut(s) | 355 |
| Psp5II | RGGWCCY | 1 cut(s) | 355 |
| Psp6I | CCWGG | 3 cut(s) | 1215, 1378, 1426 |
| PspFI | CCCAGC | 1 cut(s) | 1940 |
| PspGI | CCWGG | 3 cut(s) | 1215, 1378, 1426 |
| PspN4I | GGNNCC | 3 cut(s) | 357, 483, 1147 |
| PspPI | GGNCC | 3 cut(s) | 62, 355, 1385 |
| PspPPI | RGGWCCY | 1 cut(s) | 355 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 172, 204 |
| PstI | CTGCAG | 1 cut(s) | 2058 |
| PstNI | CAGNNNCTG | 3 cut(s) | 692, 1196, 1972 |
| PsuI | RGATCY | 1 cut(s) | 481 |
| PsyI | GACNNNGTC | 1 cut(s) | 1993 |
| PvuII | CAGCTG | 1 cut(s) | 1193 |
| RsaI | GTAC | 2 cut(s) | 234, 242 |
| RsaNI | GTAC | 2 cut(s) | 233, 241 |
| RseI | CAYNNNNRTG | 1 cut(s) | 1086 |
| SaqAI | TTAA | 7 cut(s) | 345, 462, 1205, 1227, 1604, 1659, 1860 |
| SatI | GCNGC | 7 cut(s) | 318, 792, 917, 1067, 1194, 1952, 2054 |
| Sau3AI | GATC | 3 cut(s) | 160, 481, 1356 |
| Sau96I | GGNCC | 3 cut(s) | 62, 355, 1385 |
| SchI | GAGTC | 4 cut(s) | 527, 692, 727, 893 |
| ScrFI | CCNGG | 3 cut(s) | 1217, 1380, 1428 |
| SduI | GDGCHC | 3 cut(s) | 393, 989, 1009 |
| SexAI | ACCWGGT | 3 cut(s) | 1215, 1378, 1426 |
| SfaNI | GCATC | 8 cut(s) | 158, 552, 648, 686, 850, 1078, 1639, 2040 |
| SfcI | CTRYAG | 3 cut(s) | 795, 1440, 2054 |
| SinI | GGWCC | 2 cut(s) | 355, 1385 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 1086 |
| SmlI | CTYRAG | 5 cut(s) | 236, 663, 1052, 1658, 1787 |
| SmoI | CTYRAG | 5 cut(s) | 236, 663, 1052, 1658, 1787 |
| SphI | GCATGC | 1 cut(s) | 1236 |
| Sse9I | AATT | 9 cut(s) | 50, 577, 653, 1256, 1545, 1560, 1588, 1674, 1930 |
| SseBI | AGGCCT | 1 cut(s) | 1900 |
| SsiI | CCGC | 2 cut(s) | 1135, 1819 |
| SspMI | CTAG | 4 cut(s) | 168, 381, 1286, 2107 |
| StuI | AGGCCT | 1 cut(s) | 1900 |
| StyD4I | CCNGG | 3 cut(s) | 1215, 1378, 1426 |
| StyI | CCWWGG | 3 cut(s) | 36, 58, 1081 |
| TaaI | ACNGT | 5 cut(s) | 302, 443, 1627, 1640, 1776 |
| TaiI | ACGT | 2 cut(s) | 1366, 1468 |
| TaqI | TCGA | 3 cut(s) | 527, 719, 1435 |
| TasI | AATT | 9 cut(s) | 50, 577, 653, 1256, 1545, 1560, 1588, 1674, 1930 |
| TatI | WGTACW | 2 cut(s) | 232, 240 |
| TfiI | GAWTC | 5 cut(s) | 125, 173, 419, 548, 1338 |
| Tru1I | TTAA | 7 cut(s) | 345, 462, 1205, 1227, 1604, 1659, 1860 |
| Tru9I | TTAA | 7 cut(s) | 345, 462, 1205, 1227, 1604, 1659, 1860 |
| TscAI | CASTG | 2 cut(s) | 1779, 1922 |
| TseFI | GTSAC | 1 cut(s) | 1251 |
| TseI | GCWGC | 7 cut(s) | 317, 791, 916, 1066, 1193, 1951, 2053 |
| Tsp45I | GTSAC | 1 cut(s) | 1251 |
| TspDTI | ATGAA | 7 cut(s) | 138, 540, 1295, 1681, 1685, 1827, 2049 |
| TspRI | CASTG | 2 cut(s) | 1779, 1922 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1993 |
| Vha464I | CTTAAG | 1 cut(s) | 1658 |
| VneI | GTGCAC | 3 cut(s) | 389, 985, 1005 |
| VpaK11BI | GGWCC | 2 cut(s) | 355, 1385 |
| XapI | RAATTY | 3 cut(s) | 50, 577, 1930 |
| XceI | RCATGY | 2 cut(s) | 292, 1236 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1379 |
| XmnI | GAANNNNTTC | 1 cut(s) | 329 |
| XspI | CTAG | 4 cut(s) | 168, 381, 1286, 2107 |
| ZraI | GACGTC | 1 cut(s) | 1466 |