Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0000175

Physical Location & Seq

Genomic Coordinates Reverse (-)

8139575 .. 8141815

Gene Structure 2241 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1098400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2169 bp

ATGGATACCCTTCTTGAAAGATATGATGTTTCCATGGAAAGATTCAATTTTGGGTCAGTCTATCCTCATCAAAATCTTGTAAATGGGTTCAAAGTGAATCATGAATCCACCAATTCAATTTTCCCTCCAACAAACTTGGATCATAATTCTAGTGATTCAAGCCCTTATTCGAGCGCTGGTTCAGATGGAGATTCTATTGACCCTAATGATTTCAATCATCCGATGCTCAAGTACATAAGCGATATTCTTCTGGAAGAAGATTTGGAGGGTAAACCTTGCATGATGCAGGACTGTTTGGCCCTCCAAGCTGCTGAGAAGTCTTTCTTTGATGTCCTTAATCCGAAGGGTCCCCCTTCGCCAAACCAACCCCCTTTGTCCCATAGCCTTGAGAATTCGGATGATGATTCCACCCCGAGTTTTCATAGCGGTGATGGCTCCTCTATTGCTGCTAAGACAGAATGGGGTTTTGATTCTTCAGAAACCTCCCATTTCCAATCTTCTCTTGTTGAGTCTCAATCGGATAACCTTTTGGTTTCGGATTTGCTTTCTGAGCCGCAAAGTTCTGAGCATTTCGGAGGTGTAGGGGAAGCAAGCAAGTTCCTCCCAAATGGAAGTTTTGGAACTTTTAACCAGGAGAGGCACCACTTGATGCATCCAGGTCCTGATCTGTGGCCTCCGGGGACTCGCACACTGGTGAGGAGGCCGGAGAATGATGGGTACAACTCAACAAATATATTGAAGGGAAAAAAGAATCATCAAAGGGAGGATGTTGATTATCCAGAAGAAGGGAGGAGCAGCAAGCTGCCAGTTGCTTTTGCTGATGACTCTGAGCCGCCGCAAGAAATGTTTGATGAAGTGTTGCTCTGTCATGGGCATCATCGTCTGGGTAACAAGCAGTCAAAAGGGGCTAAAACAACGCGTTCAAAGAAACAGAATAACAACACGGAAATAGTTGATTTGAGAACATTGCTAACCCAATGTGCACAAGCTGTGGCAAACTATGACCAACGAACTGCAAGTGAACTACTCCAGAAGATACGGCACCACTCTTCCCCCTGTGGTGATGCAAACCAGAGATTAGCTCATTACTTTGCTGATGGCCTAGAGGCACGCTTGGCTGGCGCCACAACCCCAACGTACTCTTTTCTTGTTGGTACACAAACATCAACTGCTGAAATATTAAAAGGTTATCAGGTGTTTATTTCTTCATCCCCTTTCAAACTCATGTCAAATTTCATGGCCAACAGAACGATTATGAAACTCTCAGAAAACGCAACAAGGCTTCACATTATTGACTTTGGTATTTCGTATGGTTTCCAATGGCCCTGCTTTATCCAACATCTCTCGGAGAGAACTGGTGGACCGCCTAAGCTTCGTATCACAGCAATTGAGCTTCCCCAACCAGGTTTTCGACCTACAGAAAGAGTTGAAGAGACTGCGCGTCGGTTGAAAAAATATGCTGAGAGATTTAATGTTCCATTTGAGTGCAATGTCATTGCTCAGAAATGGGAGACAATCAAATTTGAGGATCTTAAAATTGACAGAAGTGAGCTGACTGTGGTCAATTGTATGTGCCGTTTAAAGCATATACCTGATGAGACGGTGATGGCAAGCAGTCCAAGAGATATTGTGCTGAAGTTAATCAAGAAAATTAATCCAGACGTTTTCATTCATGGGGTTGTCAATGGGACATACAATGCACCCTTCTTTGCCACACGGTTCAGAGAGGCACTTTACCACTACTCTGCATTCTTTGATATCTTTGAGGCCACTGTTCCCCGCGAAGATGAAATGCGTCAGTTGTTTGAAAAAGCAATTCACGGTAGAGACATAGTGAATGTTGTAGCTTGTGAGGGACTGGAAAGAGTTGAAAGGCCTGAGACATACAAGCAGTGGCAGGTTCGGACCGTGAGGGCTGGGTTCAAGCAGCTCCCACTAGACCAAGCTCTTTTGAAGCGAGTGAAGAAAATGTTGAAGTCTTATCATGATGATTTTAGGATTGACGAAGACGGGAACTGGATGTTGCAGTCATGGAGAGGAAGAACTATCTTGGCTCTTTCAATTTGGGGACAAGGGTGTGCATACTGCTTTGTTCTTGGTTTTATGAGTTTATTGTTTATTTTTCATTTATTCATTGCTGCCTATGGGAGCTTGATCTTGGATATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

723

Amino Acids

81.75

Weight (kDa)

5.92

Isoelectric Point (pI)

46.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	320 - 689	4.8e-119	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca	FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica	MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica	Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis	pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis	RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata	RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora	Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa	Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha	Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana	Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1888
AccB1I	GGYRCC	3 cut(s)	639, 1041, 1121
AccII	CGCG	3 cut(s)	919, 1441, 1782
AciI	CCGC	6 cut(s)	426, 554, 833, 836, 1364, 1780
AclWI	GGATC	2 cut(s)	147, 1536
AcoI	YGGCCR	1 cut(s)	1239
AcsI	RAATTY	3 cut(s)	391, 1231, 1520
AcuI	CTGAAG	2 cut(s)	459, 1655
AcyI	GRCGYC	1 cut(s)	1122
AfaI	GTAC	4 cut(s)	233, 719, 1139, 1156
AfeI	AGCGCT	1 cut(s)	175
AfiI	CCNNNNNNNGG	2 cut(s)	785, 1403
AflIII	ACRYGT	1 cut(s)	917
AhdI	GACNNNNNGTC	1 cut(s)	1440
AjnI	CCWGG	3 cut(s)	630, 655, 1402
AjuI	GAANNNNNNNTTGG	4 cut(s)	104, 136, 1392, 1424
AleI	CACNNNNGTG	1 cut(s)	692
Alw21I	GWGCWC	1 cut(s)	985
Alw26I	GTCTC	6 cut(s)	516, 1427, 1505, 1592, 1821, 1874
Alw44I	GTGCAC	1 cut(s)	981
AlwI	GGATC	2 cut(s)	147, 1536
AlwNI	CAGNNNCTG	1 cut(s)	662
Ama87I	CYCGRG	1 cut(s)	412
Aor51HI	AGCGCT	1 cut(s)	175
AoxI	GGCC	8 cut(s)	297, 671, 701, 1099, 1239, 1322, 1767, 1874
ApaLI	GTGCAC	1 cut(s)	981
ApeKI	GCWGC	6 cut(s)	308, 446, 795, 802, 1927, 2138
ApoI	RAATTY	3 cut(s)	391, 1231, 1520
AseI	ATTAAT	1 cut(s)	1653
Asp700I	GAANNNNTTC	1 cut(s)	320
AspLEI	GCGC	3 cut(s)	176, 1124, 1441
AspS9I	GGNCC	6 cut(s)	298, 347, 659, 1323, 1361, 1905
AsuC2I	CCSGG	1 cut(s)	678
AsuHPI	GGTGA	4 cut(s)	440, 706, 1073, 1615
AvaI	CYCGRG	1 cut(s)	412
AvaII	GGWCC	4 cut(s)	347, 659, 1361, 1905
BaeGI	GKGCMC	1 cut(s)	985
BalI	TGGCCA	1 cut(s)	1241
BanI	GGYRCC	3 cut(s)	639, 1041, 1121
BbsI	GAAGAC	1 cut(s)	2013
Bbv12I	GWGCWC	1 cut(s)	985
BbvI	GCAGC	6 cut(s)	295, 433, 789, 807, 1939, 2125
BccI	CCATC	5 cut(s)	179, 425, 707, 1091, 1600
BceAI	ACGGC	2 cut(s)	1055, 1560
BciT130I	CCWGG	3 cut(s)	632, 657, 1404
BcnI	CCSGG	1 cut(s)	678
BcoDI	GTCTC	6 cut(s)	516, 1427, 1505, 1592, 1821, 1874
BfaI	CTAG	3 cut(s)	150, 1103, 1937
BfmI	CTRYAG	1 cut(s)	1416
BfoI	RGCGCY	2 cut(s)	177, 1125
BfuAI	ACCTGC	1 cut(s)	1888
BisI	GCNGC	9 cut(s)	309, 447, 554, 796, 803, 833, 836, 1928, 2139
BlsI	GCNGC	9 cut(s)	310, 448, 555, 797, 804, 834, 837, 1929, 2140
Bme1390I	CCNGG	4 cut(s)	632, 657, 678, 1404
Bme18I	GGWCC	4 cut(s)	347, 659, 1361, 1905
BmeRI	GACNNNNNGTC	1 cut(s)	1440
BmeT110I	CYCGRG	1 cut(s)	412
BmgT120I	GGNCC	6 cut(s)	298, 347, 659, 1323, 1361, 1905
BmiI	GGNNCC	6 cut(s)	348, 349, 436, 641, 1043, 1123
BmrFI	CCNGG	4 cut(s)	632, 657, 678, 1404
BmsI	GCATC	6 cut(s)	213, 273, 639, 661, 883, 1054
BoxI	GACNNNNGTC	1 cut(s)	1559
BpiI	GAAGAC	1 cut(s)	2013
BplI	GAGNNNNNCTC	2 cut(s)	1066, 1098
BpmI	CTGGAG	1 cut(s)	1013
Bpu10I	CCTNAGC	1 cut(s)	1368
BpuEI	CTTGAG	2 cut(s)	212, 407
BpuMI	CCSGG	1 cut(s)	678
BsaBI	GATNNNNATC	1 cut(s)	213
BsaHI	GRCGYC	1 cut(s)	1122
BsaJI	CCNNGG	2 cut(s)	33, 677
Bsc4I	CCNNNNNNNGG	2 cut(s)	785, 1403
Bse1I	ACTGG	5 cut(s)	696, 806, 1360, 1863, 2021
Bse3DI	GCAATG	4 cut(s)	965, 1494, 1495, 2133
Bse8I	GATNNNNATC	1 cut(s)	213
BseBI	CCWGG	3 cut(s)	632, 657, 1404
BseDI	CCNNGG	2 cut(s)	33, 677
BseGI	GGATG	6 cut(s)	217, 403, 652, 772, 1208, 2025
BseJI	GATNNNNATC	1 cut(s)	213
BseLI	CCNNNNNNNGG	2 cut(s)	785, 1403
BseMI	GCAATG	4 cut(s)	965, 1494, 1495, 2133
BseMII	CTCAG	8 cut(s)	303, 540, 555, 819, 1278, 1452, 1514, 1869
BseNI	ACTGG	5 cut(s)	696, 806, 1360, 1863, 2021
BseRI	GAGGAG	3 cut(s)	427, 712, 805
BseSI	GKGCMC	1 cut(s)	985
BseXI	GCAGC	6 cut(s)	295, 433, 789, 807, 1939, 2125
BseYI	CCCAGC	1 cut(s)	1916
Bsh1236I	CGCG	3 cut(s)	919, 1441, 1782
BshFI	GGCC	8 cut(s)	299, 673, 703, 1101, 1241, 1324, 1769, 1876
BshNI	GGYRCC	3 cut(s)	639, 1041, 1121
BsiHKAI	GWGCWC	1 cut(s)	985
BsiHKCI	CYCGRG	1 cut(s)	412
BsiSI	CCGG	2 cut(s)	677, 704
BslFI	GGGAC	6 cut(s)	333, 361, 694, 1702, 1869, 2082
BslI	CCNNNNNNNGG	2 cut(s)	785, 1403
BsmAI	GTCTC	6 cut(s)	516, 1427, 1505, 1592, 1821, 1874
BsmBI	CGTCTC	1 cut(s)	1592
BsmFI	GGGAC	6 cut(s)	333, 361, 694, 1702, 1869, 2082
BsmI	GAATGC	1 cut(s)	1748
BsnI	GGCC	8 cut(s)	299, 673, 703, 1101, 1241, 1324, 1769, 1876
BsoBI	CYCGRG	1 cut(s)	412
Bsp1286I	GDGCHC	1 cut(s)	985
Bsp143I	GATC	4 cut(s)	139, 664, 1528, 2154
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	6 cut(s)	426, 554, 833, 836, 1364, 1780
BspANI	GGCC	8 cut(s)	299, 673, 703, 1101, 1241, 1324, 1769, 1876
BspCNI	CTCAG	8 cut(s)	304, 541, 556, 820, 1277, 1453, 1513, 1870
BspFNI	CGCG	3 cut(s)	919, 1441, 1782
BspHI	TCATGA	2 cut(s)	100, 1984
BspLI	GGNNCC	6 cut(s)	348, 349, 436, 641, 1043, 1123
BspMI	ACCTGC	1 cut(s)	1888
BspPI	GGATC	2 cut(s)	147, 1536
BspT107I	GGYRCC	3 cut(s)	639, 1041, 1121
BsrDI	GCAATG	4 cut(s)	965, 1494, 1495, 2133
BsrI	ACTGG	5 cut(s)	696, 806, 1360, 1863, 2021
BssECI	CCNNGG	2 cut(s)	33, 677
BssMI	GATC	4 cut(s)	139, 664, 1528, 2154
BssNI	GRCGYC	1 cut(s)	1122
BssT1I	CCWWGG	1 cut(s)	33
Bst2UI	CCWGG	3 cut(s)	632, 657, 1404
Bst4CI	ACNGT	7 cut(s)	293, 1558, 1603, 1719, 1774, 1823, 1909
Bst6I	CTCTTC	2 cut(s)	1054, 1425
BstACI	GRCGYC	1 cut(s)	1122
BstC8I	GCNNGC	5 cut(s)	592, 800, 1111, 1120, 1612
BstDSI	CCRYGG	1 cut(s)	33
BstF5I	GGATG	6 cut(s)	217, 403, 652, 772, 1208, 2025
BstFNI	CGCG	3 cut(s)	919, 1441, 1782
BstH2I	RGCGCY	2 cut(s)	177, 1125
BstHHI	GCGC	3 cut(s)	176, 1124, 1441
BstKTI	GATC	4 cut(s)	142, 667, 1531, 2157
BstMAI	GTCTC	6 cut(s)	516, 1427, 1505, 1592, 1821, 1874
BstMBI	GATC	4 cut(s)	139, 664, 1528, 2154
BstMWI	GCNNNNNNNGC	5 cut(s)	305, 432, 550, 1115, 1119
BstNI	CCWGG	3 cut(s)	632, 657, 1404
BstPAI	GACNNNNGTC	1 cut(s)	1559
BstSCI	CCNGG	4 cut(s)	630, 655, 676, 1402
BstSFI	CTRYAG	1 cut(s)	1416
BstSLI	GKGCMC	1 cut(s)	985
BstUI	CGCG	3 cut(s)	919, 1441, 1782
BstV1I	GCAGC	6 cut(s)	295, 433, 789, 807, 1939, 2125
BstV2I	GAAGAC	1 cut(s)	2013
BstX2I	RGATCY	1 cut(s)	1528
BstYI	RGATCY	1 cut(s)	1528
BsuRI	GGCC	8 cut(s)	299, 673, 703, 1101, 1241, 1324, 1769, 1876
BtgI	CCRYGG	1 cut(s)	33
BtsCI	GGATG	6 cut(s)	217, 403, 652, 772, 1208, 2025
BtsI	GCAGTG	1 cut(s)	1898
BtsIMutI	CAGTG	3 cut(s)	689, 1770, 1898
BveI	ACCTGC	1 cut(s)	1888
Cac8I	GCNNGC	5 cut(s)	592, 800, 1111, 1120, 1612
CaiI	CAGNNNCTG	1 cut(s)	662
CciI	TCATGA	2 cut(s)	100, 1984
CfoI	GCGC	3 cut(s)	176, 1124, 1441
Cfr13I	GGNCC	6 cut(s)	298, 347, 659, 1323, 1361, 1905
CpoI	CGGWCCG	1 cut(s)	1905
CseI	GACGC	2 cut(s)	1430, 1784
CsiI	ACCWGGT	1 cut(s)	1402
Csp6I	GTAC	4 cut(s)	232, 718, 1138, 1155
CspI	CGGWCCG	1 cut(s)	1905
CviAII	CATG	9 cut(s)	34, 101, 280, 869, 1225, 1237, 1673, 1985, 2031
CviQI	GTAC	4 cut(s)	232, 718, 1138, 1155
DinI	GGCGCC	1 cut(s)	1123
DpnI	GATC	4 cut(s)	141, 666, 1530, 2156
DpnII	GATC	4 cut(s)	139, 664, 1528, 2154
DraI	TTTAAA	1 cut(s)	1581
DriI	GACNNNNNGTC	1 cut(s)	1440
EaeI	YGGCCR	1 cut(s)	1239
Eam1104I	CTCTTC	2 cut(s)	1054, 1425
Eam1105I	GACNNNNNGTC	1 cut(s)	1440
EarI	CTCTTC	2 cut(s)	1054, 1425
Eco130I	CCWWGG	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	1876
Eco32I	GATATC	1 cut(s)	1759
Eco47I	GGWCC	4 cut(s)	347, 659, 1361, 1905
Eco47III	AGCGCT	1 cut(s)	175
Eco57I	CTGAAG	2 cut(s)	459, 1655
Eco88I	CYCGRG	1 cut(s)	412
EcoO109I	RGGNCCY	2 cut(s)	347, 659
EcoRI	GAATTC	1 cut(s)	391
EcoRII	CCWGG	3 cut(s)	630, 655, 1402
EcoRV	GATATC	1 cut(s)	1759
EcoT14I	CCWWGG	1 cut(s)	33
EcoT22I	ATGCAT	1 cut(s)	654
EgeI	GGCGCC	1 cut(s)	1123
EheI	GGCGCC	1 cut(s)	1123
ErhI	CCWWGG	1 cut(s)	33
Esp3I	CGTCTC	1 cut(s)	1592
FaeI	CATG	9 cut(s)	37, 104, 283, 872, 1228, 1240, 1676, 1988, 2034
FalI	AAGNNNNNCTT	2 cut(s)	308, 340
FaqI	GGGAC	6 cut(s)	333, 361, 694, 1702, 1869, 2082
FatI	CATG	9 cut(s)	33, 100, 279, 868, 1224, 1236, 1672, 1984, 2030
FauI	CCCGC	1 cut(s)	1787
Fnu4HI	GCNGC	9 cut(s)	309, 447, 554, 796, 803, 833, 836, 1928, 2139
FokI	GGATG	6 cut(s)	204, 410, 639, 779, 1195, 2032
Fsp4HI	GCNGC	9 cut(s)	309, 447, 554, 796, 803, 833, 836, 1928, 2139
FspBI	CTAG	3 cut(s)	150, 1103, 1937
GlaI	GCGC	3 cut(s)	175, 1123, 1440
GluI	GCNGC	9 cut(s)	309, 447, 554, 796, 803, 833, 836, 1928, 2139
GsaI	CCCAGC	1 cut(s)	1920
GsuI	CTGGAG	1 cut(s)	1013
HaeII	RGCGCY	2 cut(s)	177, 1125
HaeIII	GGCC	8 cut(s)	299, 673, 703, 1101, 1241, 1324, 1769, 1876
HapII	CCGG	2 cut(s)	677, 704
HgaI	GACGC	2 cut(s)	1430, 1784
HhaI	GCGC	3 cut(s)	176, 1124, 1441
Hin1I	GRCGYC	1 cut(s)	1122
Hin1II	CATG	9 cut(s)	37, 104, 283, 872, 1228, 1240, 1676, 1988, 2034
Hin6I	GCGC	3 cut(s)	174, 1122, 1439
HinP1I	GCGC	3 cut(s)	174, 1122, 1439
HindIII	AAGCTT	1 cut(s)	1370
HpaII	CCGG	2 cut(s)	677, 704
HphI	GGTGA	4 cut(s)	440, 706, 1073, 1615
Hpy166II	GTNNAC	5 cut(s)	272, 983, 1022, 1157, 1361
Hpy188III	TCNNGA	9 cut(s)	14, 101, 251, 662, 779, 1030, 1645, 1658, 1985
Hpy8I	GTNNAC	5 cut(s)	272, 983, 1022, 1157, 1361
Hpy99I	CGWCG	1 cut(s)	1446
HpyAV	CCTTC	6 cut(s)	20, 337, 363, 733, 779, 1714
HpyCH4III	ACNGT	7 cut(s)	293, 1558, 1603, 1719, 1774, 1823, 1909
HpyCH4IV	ACGT	2 cut(s)	1136, 1662
HpyF10VI	GCNNNNNNNGC	5 cut(s)	305, 432, 550, 1115, 1119
HpySE526I	ACGT	2 cut(s)	1136, 1662
Hsp92I	GRCGYC	1 cut(s)	1122
Hsp92II	CATG	9 cut(s)	37, 104, 283, 872, 1228, 1240, 1676, 1988, 2034
HspAI	GCGC	3 cut(s)	174, 1122, 1439
KasI	GGCGCC	1 cut(s)	1121
KflI	GGGWCCC	1 cut(s)	347
Kzo9I	GATC	4 cut(s)	139, 664, 1528, 2154
LmnI	GCTCC	4 cut(s)	440, 792, 1935, 2148
Lsp1109I	GCAGC	6 cut(s)	295, 433, 789, 807, 1939, 2125
LweI	GCATC	6 cut(s)	213, 273, 639, 661, 883, 1054
MabI	ACCWGGT	1 cut(s)	1402
MaeI	CTAG	3 cut(s)	150, 1103, 1937
MaeII	ACGT	2 cut(s)	1136, 1662
MaeIII	GTNAC	1 cut(s)	887
MalI	GATC	4 cut(s)	141, 666, 1530, 2156
MboI	GATC	4 cut(s)	139, 664, 1528, 2154
MfeI	CAATTG	2 cut(s)	1386, 1564
MflI	RGATCY	1 cut(s)	1528
MhlI	GDGCHC	1 cut(s)	985
MlsI	TGGCCA	1 cut(s)	1241
MluI	ACGCGT	1 cut(s)	917
MluNI	TGGCCA	1 cut(s)	1241
Mly113I	GGCGCC	1 cut(s)	1122
MlyI	GAGTC	3 cut(s)	518, 676, 818
MmeI	TCCRAC	2 cut(s)	152, 1360
Mox20I	TGGCCA	1 cut(s)	1241
Mph1103I	ATGCAT	1 cut(s)	654
MroXI	GAANNNNTTC	1 cut(s)	320
MscI	TGGCCA	1 cut(s)	1241
MseI	TTAA	8 cut(s)	336, 627, 1181, 1470, 1533, 1580, 1640, 1653
MslI	CAYNNNNRTG	3 cut(s)	426, 692, 1483
Msp20I	TGGCCA	1 cut(s)	1241
MspI	CCGG	2 cut(s)	677, 704
MspR9I	CCNGG	4 cut(s)	632, 657, 678, 1404
MunI	CAATTG	2 cut(s)	1386, 1564
Mva1269I	GAATGC	1 cut(s)	1748
MvaI	CCWGG	3 cut(s)	632, 657, 1404
MvnI	CGCG	3 cut(s)	919, 1441, 1782
MwoI	GCNNNNNNNGC	5 cut(s)	305, 432, 550, 1115, 1119
NarI	GGCGCC	1 cut(s)	1122
NciI	CCSGG	1 cut(s)	678
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	4 cut(s)	139, 664, 1528, 2154
NlaIII	CATG	9 cut(s)	37, 104, 283, 872, 1228, 1240, 1676, 1988, 2034
NlaIV	GGNNCC	6 cut(s)	348, 349, 436, 641, 1043, 1123
NsiI	ATGCAT	1 cut(s)	654
OliI	CACNNNNGTG	1 cut(s)	692
PagI	TCATGA	2 cut(s)	100, 1984
PceI	AGGCCT	1 cut(s)	1876
PctI	GAATGC	1 cut(s)	1748
PdmI	GAANNNNTTC	1 cut(s)	320
PfeI	GAWTC	8 cut(s)	42, 97, 104, 155, 191, 404, 470, 751
PkrI	GCNGC	9 cut(s)	310, 448, 555, 797, 804, 834, 837, 1929, 2140
PleI	GAGTC	3 cut(s)	517, 676, 818
PluTI	GGCGCC	1 cut(s)	1125
PpsI	GAGTC	3 cut(s)	517, 676, 818
PpuMI	RGGWCCY	2 cut(s)	347, 659
PshAI	GACNNNNGTC	1 cut(s)	1559
PshBI	ATTAAT	1 cut(s)	1653
Psp5II	RGGWCCY	2 cut(s)	347, 659
Psp6I	CCWGG	3 cut(s)	630, 655, 1402
PspFI	CCCAGC	1 cut(s)	1916
PspGI	CCWGG	3 cut(s)	630, 655, 1402
PspN4I	GGNNCC	6 cut(s)	348, 349, 436, 641, 1043, 1123
PspPI	GGNCC	6 cut(s)	298, 347, 659, 1323, 1361, 1905
PspPPI	RGGWCCY	2 cut(s)	347, 659
PstNI	CAGNNNCTG	1 cut(s)	662
PsuI	RGATCY	1 cut(s)	1528
RsaI	GTAC	4 cut(s)	233, 719, 1139, 1156
RsaNI	GTAC	4 cut(s)	232, 718, 1138, 1155
RseI	CAYNNNNRTG	3 cut(s)	426, 692, 1483
Rsr2I	CGGWCCG	1 cut(s)	1905
RsrII	CGGWCCG	1 cut(s)	1905
SaqAI	TTAA	8 cut(s)	336, 627, 1181, 1470, 1533, 1580, 1640, 1653
SatI	GCNGC	9 cut(s)	309, 447, 554, 796, 803, 833, 836, 1928, 2139
Sau3AI	GATC	4 cut(s)	139, 664, 1528, 2154
Sau96I	GGNCC	6 cut(s)	298, 347, 659, 1323, 1361, 1905
SchI	GAGTC	3 cut(s)	518, 676, 818
ScrFI	CCNGG	4 cut(s)	632, 657, 678, 1404
SduI	GDGCHC	1 cut(s)	985
SexAI	ACCWGGT	1 cut(s)	1402
SfaNI	GCATC	6 cut(s)	213, 273, 639, 661, 883, 1054
SfcI	CTRYAG	1 cut(s)	1416
SfoI	GGCGCC	1 cut(s)	1123
SinI	GGWCC	4 cut(s)	347, 659, 1361, 1905
SmiMI	CAYNNNNRTG	3 cut(s)	426, 692, 1483
SmlI	CTYRAG	2 cut(s)	227, 386
SmoI	CTYRAG	2 cut(s)	227, 386
SseBI	AGGCCT	1 cut(s)	1876
SsiI	CCGC	6 cut(s)	426, 554, 833, 836, 1364, 1780
SspDI	GGCGCC	1 cut(s)	1121
SspI	AATATT	1 cut(s)	1179
SspMI	CTAG	3 cut(s)	150, 1103, 1937
StuI	AGGCCT	1 cut(s)	1876
StyD4I	CCNGG	4 cut(s)	630, 655, 676, 1402
StyI	CCWWGG	1 cut(s)	33
TaaI	ACNGT	7 cut(s)	293, 1558, 1603, 1719, 1774, 1823, 1909
TaiI	ACGT	2 cut(s)	1139, 1665
TaqI	TCGA	2 cut(s)	170, 1411
TatI	WGTACW	1 cut(s)	231
TauI	GCSGC	3 cut(s)	556, 835, 838
TfiI	GAWTC	8 cut(s)	42, 97, 104, 155, 191, 404, 470, 751
Tru1I	TTAA	8 cut(s)	336, 627, 1181, 1470, 1533, 1580, 1640, 1653
Tru9I	TTAA	8 cut(s)	336, 627, 1181, 1470, 1533, 1580, 1640, 1653
TscAI	CASTG	3 cut(s)	696, 1777, 1898
TseI	GCWGC	6 cut(s)	308, 446, 795, 802, 1927, 2138
TspGWI	ACGGA	1 cut(s)	959
TspRI	CASTG	3 cut(s)	696, 1777, 1898
VneI	GTGCAC	1 cut(s)	981
VpaK11BI	GGWCC	4 cut(s)	347, 659, 1361, 1905
VspI	ATTAAT	1 cut(s)	1653
XapI	RAATTY	3 cut(s)	391, 1231, 1520
XmnI	GAANNNNTTC	1 cut(s)	320
XspI	CTAG	3 cut(s)	150, 1103, 1937
Zsp2I	ATGCAT	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.