FvH4_3g36711

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000175
Physical Location & Seq
Forward (+)
31472125 .. 31477028
4904 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36711.t1

Sequence Viewer

Length: 1992 bp
ATGGATACCCTTCTTGAAAGATTATATGGCTCACCTTCAGTCTCTTCTAATCAAAGTCTTGCAAATGGATTCCAAGTAAACCATGTATCCACAAATCCACTTTTCCTCCCTACCAACTTTAACCATCCTAATCATCCGAGTACCTCTTTGAGCCTGGGTTCAGGAGAAGATACTTGTGACAATAATGACTGCAATAGTCCTATGCTCAAGTACATAAGTGATATTCTTCTTGAAGAAGACCTAGAGGGTAAACCTTGCATGTTGCAAAACTGTTTGGCACTCCAAGCTGCTGAAAAATCTTTCTATGATCTCCTCAATCCAAAGTATCGCCCTTCATTCAACCAATCTCCCCTTTCTATGTACCAAAGCTTTGAGAACTCAGATGAAGACTCCACACAGAGTTGTCATAGTAGTATTGGGTCTATTACTCCTGTGATTCCTAAGAAAAATCCATTTCATGTCCAATCTTCCTTTGCCGAGTCTACATCAGATACCGTTTTGGTTTCACGTTCGCTTTCTCAGATGAAAAGCCTTGGGATTCTAGGAGTGAGGGAAGCAATCAGAAAGGTGGTTTATGAGCCAGAGAATGACAGCTATAGCTCAACAAATGGATCAAAGGGAAAGAAAAATCATCAAAGGGAGGATGGTAGTAATCCATACAATGGGAGAAGCAGCAAGCAAGCAGCAGCTTCTGCTCAGGAATCTGAGCCTCAAGAAATGTTTGAAAAGGTGTTTCTCTGTCAGGGAGAGAATCATGAATCTGAGTGTTGTTCTCCTCGTGAATTTATGAAAACTGAGGAAAGTGGGAAGTTACAGCCTAGGAGACAACCAAGAGGATCAAAGAAGCAGAACAACATAGTGGATGTATGCACATTGTTAAATCAATGTGCACAAGCCGTGGCAAGCTATGACCGGCACGCTGTGAATGAACTACTCAAGCAAATAAGGGAACATTCTTGCCCCCATGGTGATGCAACCCAAAGGTTAGCTCATTACTTTGCCAATGGGTTAGAGGCACGCTTGCATGGTGCCATGACTCCATCATATTCACCTGTTGCAAGTATGCAGACATCAGCTGCAGATATCTTAAGAGCTCACCGGTTATATGTGACAGCATCCCCTTTAAAGAAGATGTCAAACTTTGTTGCCAATTCAACCATCATGGAATTGGCAAAAGATGCAACAAGTCTTCACATTATTGATTTCGGCATTTCTTATGGTTTCCAATGGCCCTGTCTTATCCAACATATCTCAGAAAGACGCGGTGGACCTCCTAAGATACATATGACAGCAATTGAGCTTCCCCAACCAGGTTTCCGGCCTACAGAAAGGGTTGAAGAGACAGGGCGTCGTCTAGCAAGGTATTGTGCAAGGTTCAATGTCCCTTTTGAGTACAATGTCATTGCTCAGAAATGGGAAACTATCCGAGTTGAGGATCTTAATATTAACATAAATGAGCTCATCGTGGTGAATTGTATGCACCGGTTAAGGCACATACCTGATGAGACCGTGATGTTGAGCAGTCCAAGAGACAGAGTACTAAACTTGATCAAGAAAATTAATCCAGACCTTTTTGTTCATGGTATTATTAATGGGACATACAGTCCACCCTTCTTTGTCACACGGTTCAAAGAGGCACTCTTTCATTTCGGTGCACTGTTTGATATGTTTGAGGCCATTATTCCTCGTGAAGATCAATGGAGGCAGATGTTCGAAAGAGAAATATACGGGAGGGACATAATGAATGTTGTAGCGTGTGAGGGACTGGAAAGAGTTGAAAGGCCAGAGACATACAGGCAATGGAATGTCAGGGCTCTCAGGGCCGGGTTCAGGCAGGTGCCATTAGACCAGCATTGCATGACGAAAGTGAAGAGCATGTCGAAGTTGACAGGTTATCATAAGGACTTTAGAATTGATGAAGAGGGCGAGTGGATGCTGCAAGGATGGAAAGGAAGAATCATTATGGCTCTATCGTTTTGGAAACCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS RVT_2

Protein Analysis

664

Amino Acids

75.35

Weight (kDa)

6.89

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 291 - 661 4.1e-118 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1825
Acc36I ACCTGC 1 cut(s) 1825
AccB1I GGYRCC 2 cut(s) 1028, 1837
AccB7I CCANNNNNTGG 1 cut(s) 662
AccI GTMKAC 1 cut(s) 482
AccII CGCG 1 cut(s) 1263
AciI CCGC 1 cut(s) 1263
AclWI GGATC 3 cut(s) 619, 844, 1443
AcsI RAATTY 1 cut(s) 782
AcuI CTGAAG 1 cut(s) 21
AcyI GRCGYC 1 cut(s) 1348
AdeI CACNNNGTG 1 cut(s) 922
AfaI GTAC 5 cut(s) 142, 212, 362, 1394, 1539
AfiI CCNNNNNNNGG 4 cut(s) 662, 1310, 1432, 1830
AflII CTTAAG 1 cut(s) 1087
AgeI ACCGGT 2 cut(s) 1098, 1482
AgsI TTSAA 9 cut(s) 17, 233, 340, 725, 1155, 1337, 1378, 1630, 1778
AhdI GACNNNNNGTC 2 cut(s) 1347, 1602
AjnI CCWGG 2 cut(s) 153, 1309
Alw21I GWGCWC 4 cut(s) 892, 1096, 1461, 1657
Alw26I GTCTC 6 cut(s) 46, 817, 1334, 1499, 1524, 1781
Alw44I GTGCAC 2 cut(s) 888, 1653
AlwI GGATC 3 cut(s) 619, 844, 1443
AlwNI CAGNNNCTG 1 cut(s) 692
AoxI GGCC 5 cut(s) 1229, 1319, 1674, 1781, 1821
ApaLI GTGCAC 2 cut(s) 888, 1653
ApeKI GCWGC 6 cut(s) 287, 672, 683, 686, 1076, 1936
ApoI RAATTY 1 cut(s) 782
AseI ATTAAT 2 cut(s) 1560, 1590
AsiGI ACCGGT 2 cut(s) 1098, 1482
AspA2I CCTAGG 1 cut(s) 818
AspS9I GGNCC 3 cut(s) 1230, 1268, 1821
AsuC2I CCSGG 1 cut(s) 1825
AsuHPI GGTGA 5 cut(s) 24, 980, 1041, 1088, 1480
AsuII TTCGAA 1 cut(s) 1713
AvaII GGWCC 1 cut(s) 1268
AvrII CCTAGG 1 cut(s) 818
BaeGI GKGCMC 2 cut(s) 892, 1657
BanI GGYRCC 2 cut(s) 1028, 1837
BanII GRGCYC 3 cut(s) 1096, 1461, 1816
BauI CACGAG 2 cut(s) 777, 1686
BbsI GAAGAC 3 cut(s) 243, 393, 1181
Bbv12I GWGCWC 4 cut(s) 892, 1096, 1461, 1657
BbvI GCAGC 6 cut(s) 274, 684, 695, 698, 1063, 1923
BccI CCATC 5 cut(s) 132, 638, 1048, 1166, 1938
BceAI ACGGC 1 cut(s) 881
BciT130I CCWGG 2 cut(s) 155, 1311
BciVI GTATCC 1 cut(s) 97
BclI TGATCA 1 cut(s) 1548
BcnI CCSGG 1 cut(s) 1825
BcoDI GTCTC 6 cut(s) 46, 817, 1334, 1499, 1524, 1781
BfaI CTAG 4 cut(s) 242, 542, 819, 1355
BfmI CTRYAG 3 cut(s) 595, 1077, 1323
BfrI CTTAAG 1 cut(s) 1087
BfuAI ACCTGC 1 cut(s) 1825
BfuI GTATCC 1 cut(s) 97
BisI GCNGC 6 cut(s) 288, 673, 684, 687, 1077, 1937
BlnI CCTAGG 1 cut(s) 818
BlsI GCNGC 6 cut(s) 289, 674, 685, 688, 1078, 1938
BmcAI AGTACT 1 cut(s) 1539
Bme1390I CCNGG 3 cut(s) 155, 1311, 1825
Bme18I GGWCC 1 cut(s) 1268
BmeRI GACNNNNNGTC 2 cut(s) 1347, 1602
BmgT120I GGNCC 3 cut(s) 1230, 1268, 1821
BmiI GGNNCC 2 cut(s) 1030, 1839
BmrFI CCNGG 3 cut(s) 155, 1311, 1825
BmsI GCATC 4 cut(s) 961, 1124, 1168, 1923
BpiI GAAGAC 3 cut(s) 243, 393, 1181
Bpu10I CCTNAGC 1 cut(s) 696
Bpu14I TTCGAA 1 cut(s) 1713
BpuEI CTTGAG 3 cut(s) 191, 696, 920
BpuMI CCSGG 1 cut(s) 1825
BsaHI GRCGYC 1 cut(s) 1348
BsaI GGTCTC 1 cut(s) 1499
BsaJI CCNNGG 5 cut(s) 154, 532, 818, 897, 964
BsaWI WCCGGW 2 cut(s) 1098, 1482
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 4 cut(s) 662, 1310, 1432, 1830
Bse118I RCCGGY 3 cut(s) 912, 1098, 1482
Bse1I ACTGG 1 cut(s) 1770
Bse3DI GCAATG 3 cut(s) 1401, 1805, 1852
BseBI CCWGG 2 cut(s) 155, 1311
BseDI CCNNGG 5 cut(s) 154, 532, 818, 897, 964
BseGI GGATG 7 cut(s) 124, 133, 649, 868, 1115, 1938, 1949
BseLI CCNNNNNNNGG 4 cut(s) 662, 1310, 1432, 1830
BseMI GCAATG 3 cut(s) 1401, 1805, 1852
BseMII CTCAG 9 cut(s) 393, 533, 696, 710, 753, 786, 1266, 1421, 1831
BseNI ACTGG 1 cut(s) 1770
BseRI GAGGAG 2 cut(s) 302, 765
BseSI GKGCMC 2 cut(s) 892, 1657
BseXI GCAGC 6 cut(s) 274, 684, 695, 698, 1063, 1923
Bsh1236I CGCG 1 cut(s) 1263
BshFI GGCC 5 cut(s) 1231, 1321, 1676, 1783, 1823
BshNI GGYRCC 2 cut(s) 1028, 1837
BshTI ACCGGT 2 cut(s) 1098, 1482
BsiHKAI GWGCWC 4 cut(s) 892, 1096, 1461, 1657
BsiSI CCGG 5 cut(s) 913, 1099, 1318, 1483, 1824
BslFI GGGAC 4 cut(s) 1367, 1609, 1748, 1776
BslI CCNNNNNNNGG 4 cut(s) 662, 1310, 1432, 1830
BsmAI GTCTC 6 cut(s) 46, 817, 1334, 1499, 1524, 1781
BsmFI GGGAC 4 cut(s) 1367, 1609, 1748, 1776
BsnI GGCC 5 cut(s) 1231, 1321, 1676, 1783, 1823
Bso31I GGTCTC 1 cut(s) 1499
Bsp119I TTCGAA 1 cut(s) 1713
Bsp1286I GDGCHC 5 cut(s) 892, 1096, 1461, 1657, 1816
Bsp143I GATC 6 cut(s) 307, 611, 836, 1435, 1548, 1693
Bsp19I CCATGG 1 cut(s) 964
BspACI CCGC 1 cut(s) 1263
BspANI GGCC 5 cut(s) 1231, 1321, 1676, 1783, 1823
BspCNI CTCAG 9 cut(s) 392, 532, 697, 709, 754, 787, 1265, 1420, 1830
BspFNI CGCG 1 cut(s) 1263
BspHI TCATGA 1 cut(s) 754
BspLI GGNNCC 2 cut(s) 1030, 1839
BspMAI CTGCAG 1 cut(s) 1081
BspMI ACCTGC 1 cut(s) 1825
BspPI GGATC 3 cut(s) 619, 844, 1443
BspQI GCTCTTC 1 cut(s) 1865
BspT104I TTCGAA 1 cut(s) 1713
BspT107I GGYRCC 2 cut(s) 1028, 1837
BspTI CTTAAG 1 cut(s) 1087
BspTNI GGTCTC 1 cut(s) 1499
BsrDI GCAATG 3 cut(s) 1401, 1805, 1852
BsrFI RCCGGY 3 cut(s) 912, 1098, 1482
BsrI ACTGG 1 cut(s) 1770
BssAI RCCGGY 3 cut(s) 912, 1098, 1482
BssECI CCNNGG 5 cut(s) 154, 532, 818, 897, 964
BssMI GATC 6 cut(s) 307, 611, 836, 1435, 1548, 1693
BssNI GRCGYC 1 cut(s) 1348
BssSI CACGAG 2 cut(s) 777, 1686
BssT1I CCWWGG 3 cut(s) 532, 818, 964
Bst2BI CACGAG 2 cut(s) 777, 1686
Bst2UI CCWGG 2 cut(s) 155, 1311
Bst4CI ACNGT 6 cut(s) 272, 496, 1510, 1604, 1626, 1659
Bst6I CTCTTC 4 cut(s) 49, 1332, 1865, 1914
BstACI GRCGYC 1 cut(s) 1348
BstAFI CTTAAG 1 cut(s) 1087
BstAPI GCANNNNNTGC 2 cut(s) 692, 1178
BstBI TTCGAA 1 cut(s) 1713
BstC8I GCNNGC 6 cut(s) 677, 681, 904, 918, 1018, 1022
BstDSI CCRYGG 2 cut(s) 897, 964
BstF5I GGATG 7 cut(s) 124, 133, 649, 868, 1115, 1938, 1949
BstFNI CGCG 1 cut(s) 1263
BstKTI GATC 6 cut(s) 310, 614, 839, 1438, 1551, 1696
BstMAI GTCTC 6 cut(s) 46, 817, 1334, 1499, 1524, 1781
BstMBI GATC 6 cut(s) 307, 611, 836, 1435, 1548, 1693
BstMWI GCNNNNNNNGC 4 cut(s) 284, 692, 1178, 1820
BstNI CCWGG 2 cut(s) 155, 1311
BstNSI RCATGY 2 cut(s) 262, 1879
BstSCI CCNGG 3 cut(s) 153, 1309, 1823
BstSFI CTRYAG 3 cut(s) 595, 1077, 1323
BstSLI GKGCMC 2 cut(s) 892, 1657
BstUI CGCG 1 cut(s) 1263
BstV1I GCAGC 6 cut(s) 274, 684, 695, 698, 1063, 1923
BstV2I GAAGAC 3 cut(s) 243, 393, 1181
BstX2I RGATCY 1 cut(s) 1435
BstYI RGATCY 1 cut(s) 1435
BsuI GTATCC 1 cut(s) 97
BsuRI GGCC 5 cut(s) 1231, 1321, 1676, 1783, 1823
BtgI CCRYGG 2 cut(s) 897, 964
BtsCI GGATG 7 cut(s) 124, 133, 649, 868, 1115, 1938, 1949
BtsIMutI CAGTG 1 cut(s) 1655
BveI ACCTGC 1 cut(s) 1825
Cac8I GCNNGC 6 cut(s) 677, 681, 904, 918, 1018, 1022
CaiI CAGNNNCTG 1 cut(s) 692
CciI TCATGA 1 cut(s) 754
Cfr10I RCCGGY 3 cut(s) 912, 1098, 1482
Cfr13I GGNCC 3 cut(s) 1230, 1268, 1821
CseI GACGC 2 cut(s) 1269, 1337
CsiI ACCWGGT 1 cut(s) 1309
Csp6I GTAC 5 cut(s) 141, 211, 361, 1393, 1538
CspAI ACCGGT 2 cut(s) 1098, 1482
CviQI GTAC 5 cut(s) 141, 211, 361, 1393, 1538
DpnI GATC 6 cut(s) 309, 613, 838, 1437, 1550, 1695
DpnII GATC 6 cut(s) 307, 611, 836, 1435, 1548, 1693
DraI TTTAAA 1 cut(s) 1125
DraIII CACNNNGTG 1 cut(s) 922
DriI GACNNNNNGTC 2 cut(s) 1347, 1602
Eam1104I CTCTTC 4 cut(s) 49, 1332, 1865, 1914
Eam1105I GACNNNNNGTC 2 cut(s) 1347, 1602
EarI CTCTTC 4 cut(s) 49, 1332, 1865, 1914
Ecl136II GAGCTC 2 cut(s) 1094, 1459
Eco130I CCWWGG 3 cut(s) 532, 818, 964
Eco24I GRGCYC 3 cut(s) 1096, 1461, 1816
Eco31I GGTCTC 1 cut(s) 1499
Eco32I GATATC 1 cut(s) 1084
Eco47I GGWCC 1 cut(s) 1268
Eco53kI GAGCTC 2 cut(s) 1094, 1459
Eco57I CTGAAG 1 cut(s) 21
EcoICRI GAGCTC 2 cut(s) 1094, 1459
EcoRII CCWGG 2 cut(s) 153, 1309
EcoRV GATATC 1 cut(s) 1084
EcoT14I CCWWGG 3 cut(s) 532, 818, 964
EcoT38I GRGCYC 3 cut(s) 1096, 1461, 1816
ErhI CCWWGG 3 cut(s) 532, 818, 964
FaqI GGGAC 4 cut(s) 1367, 1609, 1748, 1776
FauNDI CATATG 1 cut(s) 1284
FbaI TGATCA 1 cut(s) 1548
FblI GTMKAC 1 cut(s) 482
Fnu4HI GCNGC 6 cut(s) 288, 673, 684, 687, 1077, 1937
FokI GGATG 7 cut(s) 111, 120, 656, 875, 1102, 1945, 1956
FriOI GRGCYC 3 cut(s) 1096, 1461, 1816
Fsp4HI GCNGC 6 cut(s) 288, 673, 684, 687, 1077, 1937
FspBI CTAG 4 cut(s) 242, 542, 819, 1355
GluI GCNGC 6 cut(s) 288, 673, 684, 687, 1077, 1937
HaeIII GGCC 5 cut(s) 1231, 1321, 1676, 1783, 1823
HapII CCGG 5 cut(s) 913, 1099, 1318, 1483, 1824
HgaI GACGC 2 cut(s) 1269, 1337
Hin1I GRCGYC 1 cut(s) 1348
HincII GTYRAC 1 cut(s) 1887
HindII GTYRAC 1 cut(s) 1887
HindIII AAGCTT 1 cut(s) 367
HpaII CCGG 5 cut(s) 913, 1099, 1318, 1483, 1824
HphI GGTGA 5 cut(s) 24, 980, 1041, 1088, 1480
Hpy166II GTNNAC 8 cut(s) 79, 251, 483, 890, 1268, 1607, 1655, 1887
Hpy8I GTNNAC 8 cut(s) 79, 251, 483, 890, 1268, 1607, 1655, 1887
Hpy99I CGWCG 1 cut(s) 1353
HpyAV CCTTC 4 cut(s) 20, 45, 342, 1621
HpyCH4III ACNGT 6 cut(s) 272, 496, 1510, 1604, 1626, 1659
HpyCH4IV ACGT 1 cut(s) 508
HpyF10VI GCNNNNNNNGC 4 cut(s) 284, 692, 1178, 1820
HpySE526I ACGT 1 cut(s) 508
Hsp92I GRCGYC 1 cut(s) 1348
Ksp22I TGATCA 1 cut(s) 1548
Kzo9I GATC 6 cut(s) 307, 611, 836, 1435, 1548, 1693
LguI GCTCTTC 1 cut(s) 1865
Lsp1109I GCAGC 6 cut(s) 274, 684, 695, 698, 1063, 1923
LweI GCATC 4 cut(s) 961, 1124, 1168, 1923
MabI ACCWGGT 1 cut(s) 1309
MaeI CTAG 4 cut(s) 242, 542, 819, 1355
MaeII ACGT 1 cut(s) 508
MaeIII GTNAC 4 cut(s) 176, 810, 1108, 1618
MalI GATC 6 cut(s) 309, 613, 838, 1437, 1550, 1695
MboI GATC 6 cut(s) 307, 611, 836, 1435, 1548, 1693
MfeI CAATTG 1 cut(s) 1293
MflI RGATCY 1 cut(s) 1435
MhlI GDGCHC 5 cut(s) 892, 1096, 1461, 1657, 1816
MluCI AATT 7 cut(s) 782, 1150, 1166, 1293, 1471, 1557, 1911
MlyI GAGTC 3 cut(s) 383, 488, 1030
MmeI TCCRAC 1 cut(s) 1267
MslI CAYNNNNRTG 3 cut(s) 969, 1466, 1650
MspA1I CMGCKG 1 cut(s) 1076
MspCI CTTAAG 1 cut(s) 1087
MspI CCGG 5 cut(s) 913, 1099, 1318, 1483, 1824
MspR9I CCNGG 3 cut(s) 155, 1311, 1825
MunI CAATTG 1 cut(s) 1293
MvaI CCWGG 2 cut(s) 155, 1311
MvnI CGCG 1 cut(s) 1263
MwoI GCNNNNNNNGC 4 cut(s) 284, 692, 1178, 1820
NciI CCSGG 1 cut(s) 1825
NcoI CCATGG 1 cut(s) 964
NdeI CATATG 1 cut(s) 1284
NdeII GATC 6 cut(s) 307, 611, 836, 1435, 1548, 1693
NlaIV GGNNCC 2 cut(s) 1030, 1839
NmeAIII GCCGAG 1 cut(s) 502
NmuCI GTSAC 3 cut(s) 176, 1108, 1618
NspI RCATGY 2 cut(s) 262, 1879
NspV TTCGAA 1 cut(s) 1713
PagI TCATGA 1 cut(s) 754
PaqCI CACCTGC 1 cut(s) 1825
PciSI GCTCTTC 1 cut(s) 1865
PfeI GAWTC 7 cut(s) 69, 436, 538, 701, 751, 758, 1956
PflMI CCANNNNNTGG 1 cut(s) 662
PinAI ACCGGT 2 cut(s) 1098, 1482
PkrI GCNGC 6 cut(s) 289, 674, 685, 688, 1078, 1938
PleI GAGTC 3 cut(s) 383, 487, 1030
PpsI GAGTC 3 cut(s) 383, 487, 1030
PshBI ATTAAT 2 cut(s) 1560, 1590
Psp124BI GAGCTC 2 cut(s) 1096, 1461
Psp6I CCWGG 2 cut(s) 153, 1309
PspGI CCWGG 2 cut(s) 153, 1309
PspN4I GGNNCC 2 cut(s) 1030, 1839
PspPI GGNCC 3 cut(s) 1230, 1268, 1821
PstI CTGCAG 1 cut(s) 1081
PstNI CAGNNNCTG 1 cut(s) 692
PsuI RGATCY 1 cut(s) 1435
PvuII CAGCTG 1 cut(s) 1076
RsaI GTAC 5 cut(s) 142, 212, 362, 1394, 1539
RsaNI GTAC 5 cut(s) 141, 211, 361, 1393, 1538
RseI CAYNNNNRTG 3 cut(s) 969, 1466, 1650
SacI GAGCTC 2 cut(s) 1096, 1461
SapI GCTCTTC 1 cut(s) 1865
SatI GCNGC 6 cut(s) 288, 673, 684, 687, 1077, 1937
Sau3AI GATC 6 cut(s) 307, 611, 836, 1435, 1548, 1693
Sau96I GGNCC 3 cut(s) 1230, 1268, 1821
ScaI AGTACT 1 cut(s) 1539
SchI GAGTC 3 cut(s) 383, 488, 1030
ScrFI CCNGG 3 cut(s) 155, 1311, 1825
SduI GDGCHC 5 cut(s) 892, 1096, 1461, 1657, 1816
SexAI ACCWGGT 1 cut(s) 1309
SfaNI GCATC 4 cut(s) 961, 1124, 1168, 1923
SfcI CTRYAG 3 cut(s) 595, 1077, 1323
SfuI TTCGAA 1 cut(s) 1713
SinI GGWCC 1 cut(s) 1268
SmiMI CAYNNNNRTG 3 cut(s) 969, 1466, 1650
SmlI CTYRAG 4 cut(s) 206, 711, 935, 1087
SmoI CTYRAG 4 cut(s) 206, 711, 935, 1087
Sse9I AATT 7 cut(s) 782, 1150, 1166, 1293, 1471, 1557, 1911
SsiI CCGC 1 cut(s) 1263
SspI AATATT 1 cut(s) 1444
SspMI CTAG 4 cut(s) 242, 542, 819, 1355
SstI GAGCTC 2 cut(s) 1096, 1461
StyD4I CCNGG 3 cut(s) 153, 1309, 1823
StyI CCWWGG 3 cut(s) 532, 818, 964
TaaI ACNGT 6 cut(s) 272, 496, 1510, 1604, 1626, 1659
TaiI ACGT 1 cut(s) 511
TaqI TCGA 2 cut(s) 1713, 1880
TasI AATT 7 cut(s) 782, 1150, 1166, 1293, 1471, 1557, 1911
TatI WGTACW 3 cut(s) 210, 1392, 1537
TfiI GAWTC 7 cut(s) 69, 436, 538, 701, 751, 758, 1956
TscAI CASTG 1 cut(s) 1662
TseFI GTSAC 3 cut(s) 176, 1108, 1618
TseI GCWGC 6 cut(s) 287, 672, 683, 686, 1076, 1936
Tsp45I GTSAC 3 cut(s) 176, 1108, 1618
TspRI CASTG 1 cut(s) 1662
Van91I CCANNNNNTGG 1 cut(s) 662
Vha464I CTTAAG 1 cut(s) 1087
VneI GTGCAC 2 cut(s) 888, 1653
VpaK11BI GGWCC 1 cut(s) 1268
VspI ATTAAT 2 cut(s) 1560, 1590
XapI RAATTY 1 cut(s) 782
XceI RCATGY 2 cut(s) 262, 1879
XcmI CCANNNNNNNNNTGG 1 cut(s) 1165
XmaJI CCTAGG 1 cut(s) 818
XmiI GTMKAC 1 cut(s) 482
XspI CTAG 4 cut(s) 242, 542, 819, 1355
ZrmI AGTACT 1 cut(s) 1539
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.