Rh5DG459800

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Reverse (-)
73030782 .. 73031108
327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG459800.1

Sequence Viewer

Length: 327 bp
ATGTTTGAAGCAACCATTCCTCGTGAAGATAAGCGGCGGATGATGTTCGAGAGAGAAATATATGATAATGACATAATGAATGTCATAGCTTGCGAGGGACTGGAAAGGTTTGAAAGACCTGATACATACAAGAAGTGGCAGATCAGGAATGTGAGGACTGGGTTGAAGCAGCACCCGTTGGACCAGGAGCGGCTGAAGAAAGTAAAGAACTTGTCCAAGTTGATGGGTTATCATAAGGATTTTAGAGTTAAAGAAGATAGGCATTGGATGCTGCAGGGATGGAAAGGAAGGATCATCGTGGCTCTTTCATTTTGGATATCTGCCTAG

Protein Analysis

108

Amino Acids

13.24

Weight (kDa)

9.76

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 2 - 105 3.3e-24 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 190
AciI CCGC 3 cut(s) 34, 37, 190
AclWI GGATC 1 cut(s) 299
AcuI CTGAAG 1 cut(s) 215
AgsI TTSAA 3 cut(s) 8, 113, 166
AjnI CCWGG 1 cut(s) 183
AluBI AGCT 1 cut(s) 89
AluI AGCT 1 cut(s) 89
AlwI GGATC 1 cut(s) 299
ApeKI GCWGC 2 cut(s) 169, 271
AspS9I GGNCC 1 cut(s) 181
AvaII GGWCC 1 cut(s) 181
BauI CACGAG 1 cut(s) 21
BbvI GCAGC 2 cut(s) 181, 258
BccI CCATC 2 cut(s) 217, 273
BciT130I CCWGG 1 cut(s) 185
BfaI CTAG 1 cut(s) 325
BfmI CTRYAG 1 cut(s) 272
BisI GCNGC 4 cut(s) 35, 170, 191, 272
BlsI GCNGC 4 cut(s) 36, 171, 192, 273
Bme1390I CCNGG 1 cut(s) 185
Bme18I GGWCC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 181
BmrFI CCNGG 1 cut(s) 185
BmrI ACTGGG 1 cut(s) 168
BmsI GCATC 1 cut(s) 258
BmuI ACTGGG 1 cut(s) 168
Bse1I ACTGG 2 cut(s) 105, 163
BseBI CCWGG 1 cut(s) 185
BseGI GGATG 3 cut(s) 45, 273, 284
BseNI ACTGG 2 cut(s) 105, 163
BseXI GCAGC 2 cut(s) 181, 258
BslFI GGGAC 1 cut(s) 111
BsmFI GGGAC 1 cut(s) 111
Bsp143I GATC 2 cut(s) 141, 291
BspACI CCGC 3 cut(s) 34, 37, 190
BspMAI CTGCAG 1 cut(s) 276
BspPI GGATC 1 cut(s) 299
BsrBI CCGCTC 1 cut(s) 190
BsrI ACTGG 2 cut(s) 105, 163
BssMI GATC 2 cut(s) 141, 291
BssSI CACGAG 1 cut(s) 21
Bst2BI CACGAG 1 cut(s) 21
Bst2UI CCWGG 1 cut(s) 185
BstAPI GCANNNNNTGC 1 cut(s) 268
BstC8I GCNNGC 1 cut(s) 91
BstF5I GGATG 3 cut(s) 45, 273, 284
BstKTI GATC 2 cut(s) 144, 294
BstMBI GATC 2 cut(s) 141, 291
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 185
BstSCI CCNGG 1 cut(s) 183
BstSFI CTRYAG 1 cut(s) 272
BstV1I GCAGC 2 cut(s) 181, 258
BstXI CCANNNNNNTGG 1 cut(s) 223
BtsCI GGATG 3 cut(s) 45, 273, 284
Cac8I GCNNGC 1 cut(s) 91
Cfr13I GGNCC 1 cut(s) 181
CviJI RGCY 3 cut(s) 89, 193, 302
CviKI_1 RGCY 3 cut(s) 89, 193, 302
DpnI GATC 2 cut(s) 143, 293
DpnII GATC 2 cut(s) 141, 291
EciI GGCGGA 1 cut(s) 52
Eco32I GATATC 1 cut(s) 318
Eco47I GGWCC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 183
EcoRV GATATC 1 cut(s) 318
FaiI YATR 6 cut(s) 61, 63, 74, 86, 127, 234
FaqI GGGAC 1 cut(s) 111
Fnu4HI GCNGC 4 cut(s) 35, 170, 191, 272
FokI GGATG 3 cut(s) 52, 280, 291
Fsp4HI GCNGC 4 cut(s) 35, 170, 191, 272
FspBI CTAG 1 cut(s) 325
GluI GCNGC 4 cut(s) 35, 170, 191, 272
Hpy188III TCNNGA 3 cut(s) 23, 49, 145
HpyAV CCTTC 1 cut(s) 282
HpyCH4V TGCA 1 cut(s) 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
Kzo9I GATC 2 cut(s) 141, 291
LmnI GCTCC 1 cut(s) 187
LpnPI CCDG 7 cut(s) 86, 130, 132, 144, 170, 197, 260
Lsp1109I GCAGC 2 cut(s) 181, 258
LweI GCATC 1 cut(s) 258
MaeI CTAG 1 cut(s) 325
MalI GATC 2 cut(s) 143, 293
MbiI CCGCTC 1 cut(s) 190
MboI GATC 2 cut(s) 141, 291
MboII GAAGA 3 cut(s) 38, 208, 266
MmeI TCCRAC 1 cut(s) 159
MnlI CCTC 3 cut(s) 30, 88, 147
MseI TTAA 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 185
MvaI CCWGG 1 cut(s) 185
MwoI GCNNNNNNNGC 1 cut(s) 268
NdeII GATC 2 cut(s) 141, 291
PkrI GCNGC 4 cut(s) 36, 171, 192, 273
Psp6I CCWGG 1 cut(s) 183
PspGI CCWGG 1 cut(s) 183
PspPI GGNCC 1 cut(s) 181
PstI CTGCAG 1 cut(s) 276
SaqAI TTAA 1 cut(s) 249
SatI GCNGC 4 cut(s) 35, 170, 191, 272
Sau3AI GATC 2 cut(s) 141, 291
Sau96I GGNCC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 185
SetI ASST 3 cut(s) 91, 110, 121
SfaNI GCATC 1 cut(s) 258
SfcI CTRYAG 1 cut(s) 272
SinI GGWCC 1 cut(s) 181
SsiI CCGC 3 cut(s) 34, 37, 190
SspMI CTAG 1 cut(s) 325
StyD4I CCNGG 1 cut(s) 183
TaqI TCGA 1 cut(s) 48
TauI GCSGC 2 cut(s) 37, 193
Tru1I TTAA 1 cut(s) 249
Tru9I TTAA 1 cut(s) 249
TseI GCWGC 2 cut(s) 169, 271
TspDTI ATGAA 2 cut(s) 92, 297
VpaK11BI GGWCC 1 cut(s) 181
XspI CTAG 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.