Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000175

Physical Location & Seq

Genomic Coordinates Reverse (-)

74104393 .. 74104785

Gene Structure 393 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG431100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGAGAACTCCCCAAGAGATGCCGTTCTCAAGTTGATCAAGAATATAAATCCCAACTTTTTCATTCATGGGATTGCCAATGGGACATACATTTCACCCTTCTTTGCCACAAGGTTCAAAGTGGCACTCTTGCACTACTATGCCATGTTTGATATGTTTGAAGCAACCATTCCTCGTGAAGATACGCAGCGGATGATGTTCGAGAGAGAAATATATGATAATGACATAATGAATGTCATAGCTTGCGAGGGACTGGAAAGGTTTGAAAGACCTGATACATACAAGAAGTGGCAGATCAGGAATGTGAGGACTGGGTTGAAGCAGCTCCCGTATGTTGGACCAGGAGCAGCTGAAGAAAGTAAAGAACTTGTCCAAGTTGATGGGTTGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

130

Amino Acids

15.14

Weight (kDa)

5.7

Isoelectric Point (pI)

29.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	3 - 125	1.5e-27	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca	FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica	MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica	Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis	pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis	RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata	RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora	Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa	Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha	Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana	Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	190
AcuI	CTGAAG	1 cut(s)	372
AfiI	CCNNNNNNNGG	1 cut(s)	335
AgsI	TTSAA	4 cut(s)	118, 161, 266, 319
AjnI	CCWGG	1 cut(s)	340
AluBI	AGCT	3 cut(s)	242, 325, 350
AluI	AGCT	3 cut(s)	242, 325, 350
ApeKI	GCWGC	3 cut(s)	187, 322, 347
AspS9I	GGNCC	1 cut(s)	338
AsuHPI	GGTGA	1 cut(s)	87
AvaII	GGWCC	1 cut(s)	338
BauI	CACGAG	1 cut(s)	174
BbvI	GCAGC	3 cut(s)	199, 334, 359
BccI	CCATC	1 cut(s)	374
BceAI	ACGGC	1 cut(s)	8
BciT130I	CCWGG	1 cut(s)	342
BclI	TGATCA	1 cut(s)	36
BisI	GCNGC	3 cut(s)	188, 323, 348
BlsI	GCNGC	3 cut(s)	189, 324, 349
Bme1390I	CCNGG	1 cut(s)	342
Bme18I	GGWCC	1 cut(s)	338
BmgT120I	GGNCC	1 cut(s)	338
BmrFI	CCNGG	1 cut(s)	342
BmrI	ACTGGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	10
BmuI	ACTGGG	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	14
Bsc4I	CCNNNNNNNGG	1 cut(s)	335
Bse1I	ACTGG	2 cut(s)	258, 316
BseBI	CCWGG	1 cut(s)	342
BseGI	GGATG	1 cut(s)	198
BseLI	CCNNNNNNNGG	1 cut(s)	335
BseNI	ACTGG	2 cut(s)	258, 316
BseXI	GCAGC	3 cut(s)	199, 334, 359
BslFI	GGGAC	2 cut(s)	97, 264
BslI	CCNNNNNNNGG	1 cut(s)	335
BsmFI	GGGAC	2 cut(s)	97, 264
Bsp143I	GATC	2 cut(s)	36, 294
BspACI	CCGC	1 cut(s)	190
BsrI	ACTGG	2 cut(s)	258, 316
BssMI	GATC	2 cut(s)	36, 294
BssSI	CACGAG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	342
BstC8I	GCNNGC	1 cut(s)	244
BstF5I	GGATG	1 cut(s)	198
BstKTI	GATC	2 cut(s)	39, 297
BstMBI	GATC	2 cut(s)	36, 294
BstNI	CCWGG	1 cut(s)	342
BstSCI	CCNGG	1 cut(s)	340
BstV1I	GCAGC	3 cut(s)	199, 334, 359
BstXI	CCANNNNNNTGG	1 cut(s)	380
BtsCI	GGATG	1 cut(s)	198
Cac8I	GCNNGC	1 cut(s)	244
Cfr13I	GGNCC	1 cut(s)	338
CviAII	CATG	2 cut(s)	68, 145
CviJI	RGCY	3 cut(s)	242, 325, 350
CviKI_1	RGCY	3 cut(s)	242, 325, 350
DpnI	GATC	2 cut(s)	38, 296
DpnII	GATC	2 cut(s)	36, 294
Eco47I	GGWCC	1 cut(s)	338
Eco57I	CTGAAG	1 cut(s)	372
EcoRII	CCWGG	1 cut(s)	340
FaeI	CATG	2 cut(s)	71, 148
FaqI	GGGAC	2 cut(s)	97, 264
FatI	CATG	2 cut(s)	67, 144
FbaI	TGATCA	1 cut(s)	36
Fnu4HI	GCNGC	3 cut(s)	188, 323, 348
FokI	GGATG	1 cut(s)	205
Fsp4HI	GCNGC	3 cut(s)	188, 323, 348
GluI	GCNGC	3 cut(s)	188, 323, 348
Hin1II	CATG	2 cut(s)	71, 148
HphI	GGTGA	1 cut(s)	87
Hpy188III	TCNNGA	4 cut(s)	40, 176, 202, 298
HpyAV	CCTTC	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	133
Hsp92II	CATG	2 cut(s)	71, 148
Ksp22I	TGATCA	1 cut(s)	36
Kzo9I	GATC	2 cut(s)	36, 294
LmnI	GCTCC	2 cut(s)	330, 344
LpnPI	CCDG	6 cut(s)	239, 283, 285, 297, 327, 354
Lsp1109I	GCAGC	3 cut(s)	199, 334, 359
LweI	GCATC	1 cut(s)	10
MalI	GATC	2 cut(s)	38, 296
MboI	GATC	2 cut(s)	36, 294
MboII	GAAGA	2 cut(s)	191, 365
MmeI	TCCRAC	1 cut(s)	316
MnlI	CCTC	3 cut(s)	183, 241, 300
MslI	CAYNNNNRTG	1 cut(s)	138
MspA1I	CMGCKG	2 cut(s)	190, 350
MspR9I	CCNGG	1 cut(s)	342
MvaI	CCWGG	1 cut(s)	342
NdeII	GATC	2 cut(s)	36, 294
NlaIII	CATG	2 cut(s)	71, 148
PkrI	GCNGC	3 cut(s)	189, 324, 349
Psp6I	CCWGG	1 cut(s)	340
PspGI	CCWGG	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	138
SatI	GCNGC	3 cut(s)	188, 323, 348
Sau3AI	GATC	2 cut(s)	36, 294
Sau96I	GGNCC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	342
SetI	ASST	6 cut(s)	116, 244, 263, 274, 327, 352
SfaNI	GCATC	1 cut(s)	10
SinI	GGWCC	1 cut(s)	338
SmiMI	CAYNNNNRTG	1 cut(s)	138
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
SsiI	CCGC	1 cut(s)	190
StyD4I	CCNGG	1 cut(s)	340
TaqI	TCGA	1 cut(s)	201
TseI	GCWGC	3 cut(s)	187, 322, 347
TspDTI	ATGAA	3 cut(s)	52, 56, 245
VpaK11BI	GGWCC	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.