FvH4_3g36691

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000175
Physical Location & Seq
Forward (+)
31450586 .. 31453670
3085 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g36691.t1

Sequence Viewer

Length: 2100 bp
ATGGATACCCTTCATAGATATTCTGTTCCAGAGTTCAAATATGACCATGGCCCTGTTTCTGTCTGTCCAAATCCAATTGTAAATGGGTTCAAAGTAAATCATGAATCCACCAATCCGGTGTTACCTGCATCCAGATCTGAGCTGTCTAGTGATTCAAGTAATGAGGGCTCAGAGGTAGATGGTCTTGATATCAATGACTGCAATCATCCTGTACTCAAGTACATAAGTGATATTCTTCTAGAAGAAGACTTGGAGGGTAAGCCCTGCATGTTGCATGACTGTTTAGCCCTCCAAACTGCTGAGAAGTCTTTCTATGATGCCCTTGTTCAGAAGGACCCTCCTTTACCCAACCAACCCTCCTCTAGTTCTGTGCACCAAAGCTCTGAGAGTTCTGATGATGATTCCCCACAGAGTTTCCAAAGCAGTAATCGCTCCTTTCCTGTCAAGACAGATTGGGTTTGGGATCCGGCGTTCTCTCCTGTCCAATCTTCTCTGTTTGAGTCTTTCTCCAATACTCTTTTGGTTTCTGATTCAATTTCTAAGATGCAAAGTCTTGGAAATTTTGGAGGGGTGGGGGAAGCAAGCAAGTTCCTTTCAAATGCGAAACTTGAAATGGTTGACTTAGATAGGTTTCAATTGATGCCTCAAGGTCCAGTCTCATCTGAGTCAGGGGCGGATGGATACAGCTTTACAAATGGATCAAAGGGAAAGAAGACTCATCAGAGGGAGGATAGTCATTTTCTAGAAGAAGAAGAGAGGAGCAGCAAGCAGTCAGCTGCTACAGGGGATGACTTTGAGCCACAAGAATTGTTTGACAAGGTTTTACTTTGTCCTCATGAAAATCATGAGTCTGAGCTTTGTGCAGATGATGAGTCTTTTAAAACAGAAGGAAATGGGAAGTTGCAGCGTAAAAAGCAGCCAAAAGGATCAAAGGCAAAGCGACAGAATAACATTGGTGAAGTGGTAGATTTGTGCACAATGCTAACTCAATGTGCACAAGCTGTGGCAAACTTTGACCAACGAACTGCAAGTGAACTACTCAAGCAGATAAGGCAGCACTCAACCCCCCATGGTGATGCAACCCAGAGATTAGCTCATTACTTTGCTGATGGCCTCCAGACACGCTTGGCTGGTGCCAAAACCCCATCGTATTCGCCTCTTGTAAGTGTGCAGATATCAGCTGCTGAAATATTGAAAGCATACCAGGTATTTATTACAGCTTGCCCTTTCAAGAAGATGTCACACTTCTTTGCCAACAGAACAATTATGAAACTAGCAGAAAATGCAACAAGGCTTCACATTATTGATTTTGGTATTTCTTATGGATTTCAATGGCCTTGCCTGATTCAACGTCTGTCCCAAAGACCTGGTGGACCTCCTAAGCTTCGTATCACAGCAATTGAGCTGCCCCAACCAGGTTTTCGACCTACAGAAAGAGTTGAAGAGACCGGACGTCGCTTGGAAAAATATGCCAAGAGATTTGATGTCCCCTTTGAGTATAATGTCATTGCTCAGAAATGGGAAACTATCCGAATTGAGGACATCAAAATTGACAGAAGTGAGTTGATTGTGGTCAATTGTATGCACCGTTTAAGGAACATACCAGATGAGACGGTGATGGTGAACAGTCCAAGAGATGCTGTCCTTAAGTTGATAAGGAAAATTAGTCCAGACCTTTTCATTCATGGTGTTGTCAATGGGACATATAATGCTCCCTTCTTTCTCACACGATTCAGAGAGGCACTTCTCCACTACTATACACTGTTTGATATGCTGGAGGCGACCATCTCTCGTGAAGATGGACAACAGCGGTTTATGTTTGAGCAAGCAATATATGGTAGAGATGTAGTTAATGTCGTAGCGTGTGAGGGACTGGAAAGAGTTGATAGGCCTGAAACATACAGACAATGGCAGGCCAGGAATGTGAGGGCTGGGTTCAAGCAGCTACCATTAGACCAGAAGCTGTTGAAGAAAGTGAAGACTATGTCAAAAGTCATGTGTTATCATGATGATTTTAGAGTTGATGAAGATGGACATTGGATGCTGCAGGGATGGAAAGGAAGAACCATCATGGCTCTTTCTTTTTGGAAGCCTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS RVT_2

Protein Analysis

700

Amino Acids

79.23

Weight (kDa)

6.03

Isoelectric Point (pI)

52.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 326 - 697 2.6e-122 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1456
Acc36I ACCTGC 1 cut(s) 133
AccB1I GGYRCC 1 cut(s) 1133
AciI CCGC 2 cut(s) 674, 1810
AclWI GGATC 4 cut(s) 458, 471, 706, 934
AcsI RAATTY 1 cut(s) 559
AcyI GRCGYC 1 cut(s) 1453
AfaI GTAC 2 cut(s) 213, 221
AfiI CCNNNNNNNGG 2 cut(s) 1415, 1537
AflII CTTAAG 1 cut(s) 1646
AhdI GACNNNNNGTC 1 cut(s) 1452
AjnI CCWGG 4 cut(s) 1203, 1366, 1414, 1916
AjuI GAANNNNNNNTTGG 2 cut(s) 1404, 1436
AloI GAACNNNNNNTCC 2 cut(s) 455, 487
Alw21I GWGCWC 3 cut(s) 375, 977, 997
Alw26I GTCTC 3 cut(s) 661, 1439, 1604
Alw44I GTGCAC 3 cut(s) 371, 973, 993
AlwI GGATC 4 cut(s) 458, 471, 706, 934
AlwNI CAGNNNCTG 2 cut(s) 1184, 1963
AoxI GGCC 5 cut(s) 49, 1111, 1334, 1889, 1914
ApaLI GTGCAC 3 cut(s) 371, 973, 993
ApeKI GCWGC 9 cut(s) 762, 776, 904, 916, 1054, 1181, 1405, 1942, 2044
ApoI RAATTY 1 cut(s) 559
Asp700I GAANNNNTTC 1 cut(s) 308
AspS9I GGNCC 4 cut(s) 50, 334, 650, 1373
AsuHPI GGTGA 4 cut(s) 968, 1085, 1627, 1633
AvaII GGWCC 3 cut(s) 334, 650, 1373
BaeGI GKGCMC 3 cut(s) 375, 977, 997
BamHI GGATCC 1 cut(s) 463
BanI GGYRCC 1 cut(s) 1133
BanII GRGCYC 1 cut(s) 170
BauI CACGAG 1 cut(s) 1791
BbsI GAAGAC 3 cut(s) 252, 719, 1985
Bbv12I GWGCWC 3 cut(s) 375, 977, 997
BbvI GCAGC 9 cut(s) 763, 774, 916, 928, 1066, 1168, 1392, 1954, 2031
BciT130I CCWGG 4 cut(s) 1205, 1368, 1416, 1918
BciVI GTATCC 1 cut(s) 674
BcoDI GTCTC 3 cut(s) 661, 1439, 1604
BfaI CTAG 5 cut(s) 147, 239, 363, 743, 1274
BfmI CTRYAG 3 cut(s) 780, 1428, 2045
BfrI CTTAAG 1 cut(s) 1646
BfuAI ACCTGC 1 cut(s) 133
BfuI GTATCC 1 cut(s) 674
BglII AGATCT 1 cut(s) 134
BisI GCNGC 9 cut(s) 763, 777, 905, 917, 1055, 1182, 1406, 1943, 2045
BlsI GCNGC 9 cut(s) 764, 778, 906, 918, 1056, 1183, 1407, 1944, 2046
Bme1390I CCNGG 4 cut(s) 1205, 1368, 1416, 1918
Bme18I GGWCC 3 cut(s) 334, 650, 1373
BmeRI GACNNNNNGTC 1 cut(s) 1452
BmgT120I GGNCC 4 cut(s) 50, 334, 650, 1373
BmiI GGNNCC 3 cut(s) 336, 465, 1135
BmrFI CCNGG 4 cut(s) 1205, 1368, 1416, 1918
BmsI GCATC 7 cut(s) 137, 307, 534, 630, 1066, 1627, 2031
BpiI GAAGAC 3 cut(s) 252, 719, 1985
BplI GAGNNNNNCTC 4 cut(s) 491, 523, 1078, 1110
BpmI CTGGAG 2 cut(s) 1100, 1796
Bpu10I CCTNAGC 1 cut(s) 1380
BpuEI CTTGAG 3 cut(s) 200, 630, 1025
BsaHI GRCGYC 1 cut(s) 1453
BsaI GGTCTC 1 cut(s) 1439
BsaJI CCNNGG 2 cut(s) 46, 1069
BsaWI WCCGGW 2 cut(s) 115, 1448
BsaXI ACNNNNNCTCC 2 cut(s) 341, 371
Bsc4I CCNNNNNNNGG 2 cut(s) 1415, 1537
Bse1I ACTGG 2 cut(s) 653, 1878
Bse3DI GCAATG 1 cut(s) 1506
BseBI CCWGG 4 cut(s) 1205, 1368, 1416, 1918
BseDI CCNNGG 2 cut(s) 46, 1069
BseGI GGATG 6 cut(s) 128, 205, 682, 793, 2046, 2057
BseLI CCNNNNNNNGG 2 cut(s) 1415, 1537
BseMI GCAATG 1 cut(s) 1506
BseMII CTCAG 7 cut(s) 129, 183, 291, 375, 654, 843, 1526
BseNI ACTGG 2 cut(s) 653, 1878
BseRI GAGGAG 2 cut(s) 349, 772
BseSI GKGCMC 3 cut(s) 375, 977, 997
BseXI GCAGC 9 cut(s) 763, 774, 916, 928, 1066, 1168, 1392, 1954, 2031
BseYI CCCAGC 1 cut(s) 1931
BsgI GTGCAG 2 cut(s) 882, 1190
BshFI GGCC 5 cut(s) 51, 1113, 1336, 1891, 1916
BshNI GGYRCC 1 cut(s) 1133
BsiHKAI GWGCWC 3 cut(s) 375, 977, 997
BsiSI CCGG 3 cut(s) 116, 467, 1449
BslFI GGGAC 4 cut(s) 1342, 1472, 1714, 1884
BslI CCNNNNNNNGG 2 cut(s) 1415, 1537
BsmAI GTCTC 3 cut(s) 661, 1439, 1604
BsmBI CGTCTC 1 cut(s) 1604
BsmFI GGGAC 4 cut(s) 1342, 1472, 1714, 1884
BsnI GGCC 5 cut(s) 51, 1113, 1336, 1891, 1916
Bso31I GGTCTC 1 cut(s) 1439
Bsp1286I GDGCHC 4 cut(s) 170, 375, 977, 997
Bsp143I GATC 4 cut(s) 134, 463, 698, 926
Bsp19I CCATGG 2 cut(s) 46, 1069
BspACI CCGC 2 cut(s) 674, 1810
BspANI GGCC 5 cut(s) 51, 1113, 1336, 1891, 1916
BspCNI CTCAG 7 cut(s) 130, 182, 292, 376, 655, 844, 1525
BspHI TCATGA 4 cut(s) 100, 835, 844, 2005
BspLI GGNNCC 3 cut(s) 336, 465, 1135
BspMAI CTGCAG 1 cut(s) 2049
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 4 cut(s) 458, 471, 706, 934
BspT107I GGYRCC 1 cut(s) 1133
BspTI CTTAAG 1 cut(s) 1646
BspTNI GGTCTC 1 cut(s) 1439
BsrDI GCAATG 1 cut(s) 1506
BsrI ACTGG 2 cut(s) 653, 1878
BssECI CCNNGG 2 cut(s) 46, 1069
BssMI GATC 4 cut(s) 134, 463, 698, 926
BssNI GRCGYC 1 cut(s) 1453
BssSI CACGAG 1 cut(s) 1791
BssT1I CCWWGG 2 cut(s) 46, 1069
Bst2BI CACGAG 1 cut(s) 1791
Bst2UI CCWGG 4 cut(s) 1205, 1368, 1416, 1918
Bst4CI ACNGT 5 cut(s) 281, 1589, 1615, 1628, 1764
Bst6I CTCTTC 2 cut(s) 747, 1437
BstACI GRCGYC 1 cut(s) 1453
BstAFI CTTAAG 1 cut(s) 1646
BstAPI GCANNNNNTGC 1 cut(s) 1283
BstC8I GCNNGC 5 cut(s) 583, 767, 1222, 1827, 1914
BstDSI CCRYGG 2 cut(s) 46, 1069
BstF5I GGATG 6 cut(s) 128, 205, 682, 793, 2046, 2057
BstKTI GATC 4 cut(s) 137, 466, 701, 929
BstMAI GTCTC 3 cut(s) 661, 1439, 1604
BstMBI GATC 4 cut(s) 134, 463, 698, 926
BstMWI GCNNNNNNNGC 4 cut(s) 429, 913, 1051, 1283
BstNI CCWGG 4 cut(s) 1205, 1368, 1416, 1918
BstNSI RCATGY 1 cut(s) 271
BstSCI CCNGG 4 cut(s) 1203, 1366, 1414, 1916
BstSFI CTRYAG 3 cut(s) 780, 1428, 2045
BstSLI GKGCMC 3 cut(s) 375, 977, 997
BstV1I GCAGC 9 cut(s) 763, 774, 916, 928, 1066, 1168, 1392, 1954, 2031
BstV2I GAAGAC 3 cut(s) 252, 719, 1985
BstX2I RGATCY 2 cut(s) 134, 463
BstXI CCANNNNNNTGG 1 cut(s) 1367
BstYI RGATCY 2 cut(s) 134, 463
BsuI GTATCC 1 cut(s) 674
BsuRI GGCC 5 cut(s) 51, 1113, 1336, 1891, 1916
BtgI CCRYGG 2 cut(s) 46, 1069
BtsCI GGATG 6 cut(s) 128, 205, 682, 793, 2046, 2057
BtsIMutI CAGTG 1 cut(s) 1760
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 5 cut(s) 583, 767, 1222, 1827, 1914
CaiI CAGNNNCTG 2 cut(s) 1184, 1963
CciI TCATGA 4 cut(s) 100, 835, 844, 2005
Cfr13I GGNCC 4 cut(s) 50, 334, 650, 1373
CsiI ACCWGGT 3 cut(s) 1203, 1366, 1414
Csp6I GTAC 2 cut(s) 212, 220
CspCI CAANNNNNGTGG 2 cut(s) 789, 824
CviQI GTAC 2 cut(s) 212, 220
DpnI GATC 4 cut(s) 136, 465, 700, 928
DpnII GATC 4 cut(s) 134, 463, 698, 926
DraI TTTAAA 1 cut(s) 880
DriI GACNNNNNGTC 1 cut(s) 1452
Eam1104I CTCTTC 2 cut(s) 747, 1437
Eam1105I GACNNNNNGTC 1 cut(s) 1452
EarI CTCTTC 2 cut(s) 747, 1437
EciI GGCGGA 1 cut(s) 689
Eco130I CCWWGG 2 cut(s) 46, 1069
Eco147I AGGCCT 1 cut(s) 1891
Eco24I GRGCYC 1 cut(s) 170
Eco31I GGTCTC 1 cut(s) 1439
Eco32I GATATC 2 cut(s) 190, 1176
Eco47I GGWCC 3 cut(s) 334, 650, 1373
EcoO109I RGGNCCY 1 cut(s) 334
EcoRII CCWGG 4 cut(s) 1203, 1366, 1414, 1916
EcoRV GATATC 2 cut(s) 190, 1176
EcoT14I CCWWGG 2 cut(s) 46, 1069
EcoT38I GRGCYC 1 cut(s) 170
ErhI CCWWGG 2 cut(s) 46, 1069
Esp3I CGTCTC 1 cut(s) 1604
FaqI GGGAC 4 cut(s) 1342, 1472, 1714, 1884
Fnu4HI GCNGC 9 cut(s) 763, 777, 905, 917, 1055, 1182, 1406, 1943, 2045
FokI GGATG 6 cut(s) 115, 192, 689, 800, 2053, 2064
FriOI GRGCYC 1 cut(s) 170
Fsp4HI GCNGC 9 cut(s) 763, 777, 905, 917, 1055, 1182, 1406, 1943, 2045
FspBI CTAG 5 cut(s) 147, 239, 363, 743, 1274
GluI GCNGC 9 cut(s) 763, 777, 905, 917, 1055, 1182, 1406, 1943, 2045
GsaI CCCAGC 1 cut(s) 1935
GsuI CTGGAG 2 cut(s) 1100, 1796
HaeIII GGCC 5 cut(s) 51, 1113, 1336, 1891, 1916
HapII CCGG 3 cut(s) 116, 467, 1449
Hin1I GRCGYC 1 cut(s) 1453
HincII GTYRAC 1 cut(s) 619
HindII GTYRAC 1 cut(s) 619
HindIII AAGCTT 1 cut(s) 1382
HpaII CCGG 3 cut(s) 116, 467, 1449
HphI GGTGA 4 cut(s) 968, 1085, 1627, 1633
Hpy166II GTNNAC 7 cut(s) 373, 619, 975, 995, 1034, 1373, 1624
Hpy8I GTNNAC 7 cut(s) 373, 619, 975, 995, 1034, 1373, 1624
Hpy99I CGWCG 1 cut(s) 1458
HpyAV CCTTC 4 cut(s) 20, 325, 881, 1726
HpyCH4III ACNGT 5 cut(s) 281, 1589, 1615, 1628, 1764
HpyCH4IV ACGT 2 cut(s) 1351, 1453
HpyF10VI GCNNNNNNNGC 4 cut(s) 429, 913, 1051, 1283
HpySE526I ACGT 2 cut(s) 1351, 1453
Hsp92I GRCGYC 1 cut(s) 1453
Kzo9I GATC 4 cut(s) 134, 463, 698, 926
LmnI GCTCC 3 cut(s) 437, 759, 1717
Lsp1109I GCAGC 9 cut(s) 763, 774, 916, 928, 1066, 1168, 1392, 1954, 2031
LweI GCATC 7 cut(s) 137, 307, 534, 630, 1066, 1627, 2031
MabI ACCWGGT 3 cut(s) 1203, 1366, 1414
MaeI CTAG 5 cut(s) 147, 239, 363, 743, 1274
MaeII ACGT 2 cut(s) 1351, 1453
MaeIII GTNAC 2 cut(s) 120, 1239
MalI GATC 4 cut(s) 136, 465, 700, 928
MboI GATC 4 cut(s) 134, 463, 698, 926
MfeI CAATTG 4 cut(s) 75, 635, 1398, 1576
MflI RGATCY 2 cut(s) 134, 463
MhlI GDGCHC 4 cut(s) 170, 375, 977, 997
MlyI GAGTC 5 cut(s) 509, 674, 709, 857, 881
MroXI GAANNNNTTC 1 cut(s) 308
MseI TTAA 4 cut(s) 879, 1592, 1647, 1851
MslI CAYNNNNRTG 1 cut(s) 1074
MspA1I CMGCKG 3 cut(s) 776, 1181, 1810
MspCI CTTAAG 1 cut(s) 1646
MspI CCGG 3 cut(s) 116, 467, 1449
MspR9I CCNGG 4 cut(s) 1205, 1368, 1416, 1918
MunI CAATTG 4 cut(s) 75, 635, 1398, 1576
MvaI CCWGG 4 cut(s) 1205, 1368, 1416, 1918
MwoI GCNNNNNNNGC 4 cut(s) 429, 913, 1051, 1283
NcoI CCATGG 2 cut(s) 46, 1069
NdeII GATC 4 cut(s) 134, 463, 698, 926
NlaIV GGNNCC 3 cut(s) 336, 465, 1135
NmuCI GTSAC 1 cut(s) 1239
NspI RCATGY 1 cut(s) 271
PagI TCATGA 4 cut(s) 100, 835, 844, 2005
PceI AGGCCT 1 cut(s) 1891
PdmI GAANNNNTTC 1 cut(s) 308
PfeI GAWTC 6 cut(s) 104, 152, 401, 530, 1345, 1731
PflFI GACNNNGTC 1 cut(s) 1984
PkrI GCNGC 9 cut(s) 764, 778, 906, 918, 1056, 1183, 1407, 1944, 2046
PleI GAGTC 5 cut(s) 508, 673, 709, 856, 880
PpsI GAGTC 5 cut(s) 508, 673, 709, 856, 880
PpuMI RGGWCCY 1 cut(s) 334
Psp5II RGGWCCY 1 cut(s) 334
Psp6I CCWGG 4 cut(s) 1203, 1366, 1414, 1916
PspFI CCCAGC 1 cut(s) 1931
PspGI CCWGG 4 cut(s) 1203, 1366, 1414, 1916
PspN4I GGNNCC 3 cut(s) 336, 465, 1135
PspPI GGNCC 4 cut(s) 50, 334, 650, 1373
PspPPI RGGWCCY 1 cut(s) 334
PstI CTGCAG 1 cut(s) 2049
PstNI CAGNNNCTG 2 cut(s) 1184, 1963
PsuI RGATCY 2 cut(s) 134, 463
PsyI GACNNNGTC 1 cut(s) 1984
PvuII CAGCTG 2 cut(s) 776, 1181
RsaI GTAC 2 cut(s) 213, 221
RsaNI GTAC 2 cut(s) 212, 220
RseI CAYNNNNRTG 1 cut(s) 1074
SaqAI TTAA 4 cut(s) 879, 1592, 1647, 1851
SatI GCNGC 9 cut(s) 763, 777, 905, 917, 1055, 1182, 1406, 1943, 2045
Sau3AI GATC 4 cut(s) 134, 463, 698, 926
Sau96I GGNCC 4 cut(s) 50, 334, 650, 1373
SchI GAGTC 5 cut(s) 509, 674, 709, 857, 881
ScrFI CCNGG 4 cut(s) 1205, 1368, 1416, 1918
SduI GDGCHC 4 cut(s) 170, 375, 977, 997
SexAI ACCWGGT 3 cut(s) 1203, 1366, 1414
SfaNI GCATC 7 cut(s) 137, 307, 534, 630, 1066, 1627, 2031
SfcI CTRYAG 3 cut(s) 780, 1428, 2045
SinI GGWCC 3 cut(s) 334, 650, 1373
SmiMI CAYNNNNRTG 1 cut(s) 1074
SmlI CTYRAG 4 cut(s) 215, 645, 1040, 1646
SmoI CTYRAG 4 cut(s) 215, 645, 1040, 1646
SseBI AGGCCT 1 cut(s) 1891
SsiI CCGC 2 cut(s) 674, 1810
SspI AATATT 1 cut(s) 1191
SspMI CTAG 5 cut(s) 147, 239, 363, 743, 1274
StuI AGGCCT 1 cut(s) 1891
StyD4I CCNGG 4 cut(s) 1203, 1366, 1414, 1916
StyI CCWWGG 2 cut(s) 46, 1069
TaaI ACNGT 5 cut(s) 281, 1589, 1615, 1628, 1764
TaiI ACGT 2 cut(s) 1354, 1456
TaqI TCGA 1 cut(s) 1423
TatI WGTACW 2 cut(s) 211, 219
TfiI GAWTC 6 cut(s) 104, 152, 401, 530, 1345, 1731
Tru1I TTAA 4 cut(s) 879, 1592, 1647, 1851
Tru9I TTAA 4 cut(s) 879, 1592, 1647, 1851
TscAI CASTG 1 cut(s) 1767
TseFI GTSAC 1 cut(s) 1239
TseI GCWGC 9 cut(s) 762, 776, 904, 916, 1054, 1181, 1405, 1942, 2044
Tsp45I GTSAC 1 cut(s) 1239
TspDTI ATGAA 6 cut(s) 117, 852, 1283, 1669, 1673, 2040
TspRI CASTG 1 cut(s) 1767
Tth111I GACNNNGTC 1 cut(s) 1984
Vha464I CTTAAG 1 cut(s) 1646
VneI GTGCAC 3 cut(s) 371, 973, 993
VpaK11BI GGWCC 3 cut(s) 334, 650, 1373
XapI RAATTY 1 cut(s) 559
XbaI TCTAGA 2 cut(s) 238, 742
XceI RCATGY 1 cut(s) 271
XcmI CCANNNNNNNNNTGG 2 cut(s) 517, 1367
XmnI GAANNNNTTC 1 cut(s) 308
XspI CTAG 5 cut(s) 147, 239, 363, 743, 1274
ZraI GACGTC 1 cut(s) 1454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.