Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001010.1

Orthogroup ID

OG0000175

Physical Location & Seq

Genomic Coordinates Forward (+)

134666 .. 136375

Gene Structure 1710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001010.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atgtggcgtctcattaagatgagggcggtggcattattcatagccgtacgctcgaatatgagctcaggctcggtggtgcttcacttggaggatgcgtgcggtggtgggatttggccgagaggaggtcgcaaactgcttgttttgctaaccaagaaggctgcaggtgcagctgggtcgtgcggatattcgagaggtgctaaaggtgtagcggactgctatgtgagctacagggggcagcggatgcacgccaccattcctcgtgaagataagcggcggatgatgttcgagagagaaatatatgataatgacataatgaatgtcatagcttgcgagggactagaaaggtttgaaagacctgatacatacaagaagtggcagattaggaatgtgaggactgggttgaagcagcacccattggactag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

140

Amino Acids

15.88

Weight (kDa)

9.91

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca	FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica	MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica	Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis	pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis	RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata	RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora	Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa	Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha	Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana	Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	152
Acc36I	ACCTGC	1 cut(s)	152
AciI	CCGC	7 cut(s)	26, 99, 180, 209, 238, 271, 274
AcoI	YGGCCR	1 cut(s)	113
AcyI	GRCGYC	1 cut(s)	7
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	122
AgsI	TTSAA	2 cut(s)	350, 403
AluBI	AGCT	4 cut(s)	63, 170, 225, 326
AluI	AGCT	4 cut(s)	63, 170, 225, 326
Alw21I	GWGCWC	1 cut(s)	65
Alw26I	GTCTC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	113
ApeKI	GCWGC	4 cut(s)	158, 167, 235, 406
BanII	GRGCYC	1 cut(s)	65
BauI	CACGAG	1 cut(s)	258
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	4 cut(s)	145, 179, 247, 418
BceAI	ACGGC	1 cut(s)	29
BcgI	CGANNNNNNTGC	2 cut(s)	156, 190
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	2 cut(s)	338, 421
BfmI	CTRYAG	2 cut(s)	159, 226
BfuAI	ACCTGC	1 cut(s)	152
BisI	GCNGC	5 cut(s)	159, 168, 236, 272, 407
BlsI	GCNGC	5 cut(s)	160, 169, 237, 273, 408
BmrI	ACTGGG	1 cut(s)	405
BmsI	GCATC	2 cut(s)	82, 231
BmuI	ACTGGG	1 cut(s)	405
Bpu10I	CCTNAGC	1 cut(s)	64
BsaHI	GRCGYC	1 cut(s)	7
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	1 cut(s)	400
BseGI	GGATG	3 cut(s)	97, 246, 282
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	400
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	4 cut(s)	145, 179, 247, 418
BseYI	CCCAGC	1 cut(s)	170
BsgI	GTGCAG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	65
BsiWI	CGTACG	1 cut(s)	46
BslFI	GGGAC	1 cut(s)	348
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	14
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	348
BsnI	GGCC	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	65
BspACI	CCGC	7 cut(s)	26, 99, 180, 209, 238, 271, 274
BspANI	GGCC	1 cut(s)	115
BspCNI	CTCAG	1 cut(s)	77
BspMAI	CTGCAG	1 cut(s)	163
BspMI	ACCTGC	1 cut(s)	152
BsrI	ACTGG	1 cut(s)	400
BssNI	GRCGYC	1 cut(s)	7
BssSI	CACGAG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	258
BstACI	GRCGYC	1 cut(s)	7
BstAPI	GCANNNNNTGC	1 cut(s)	241
BstC8I	GCNNGC	3 cut(s)	97, 246, 328
BstDEI	CTNAG	1 cut(s)	64
BstF5I	GGATG	3 cut(s)	97, 246, 282
BstMAI	GTCTC	1 cut(s)	14
BstMWI	GCNNNNNNNGC	5 cut(s)	142, 164, 167, 222, 241
BstSFI	CTRYAG	2 cut(s)	159, 226
BstV1I	GCAGC	4 cut(s)	145, 179, 247, 418
BsuRI	GGCC	1 cut(s)	115
BtsCI	GGATG	3 cut(s)	97, 246, 282
BveI	ACCTGC	1 cut(s)	152
Cac8I	GCNNGC	3 cut(s)	97, 246, 328
Csp6I	GTAC	1 cut(s)	47
CviJI	RGCY	8 cut(s)	44, 63, 69, 115, 158, 170, 225, 326
CviKI_1	RGCY	8 cut(s)	44, 63, 69, 115, 158, 170, 225, 326
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	113
EciI	GGCGGA	1 cut(s)	289
Ecl136II	GAGCTC	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	63
EcoICRI	GAGCTC	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	65
Esp3I	CGTCTC	1 cut(s)	14
FaiI	YATR	8 cut(s)	41, 59, 219, 298, 300, 311, 323, 364
FaqI	GGGAC	1 cut(s)	348
Fnu4HI	GCNGC	5 cut(s)	159, 168, 236, 272, 407
FokI	GGATG	3 cut(s)	104, 253, 289
FriOI	GRGCYC	1 cut(s)	65
Fsp4HI	GCNGC	5 cut(s)	159, 168, 236, 272, 407
FspBI	CTAG	2 cut(s)	338, 421
GluI	GCNGC	5 cut(s)	159, 168, 236, 272, 407
GsaI	CCCAGC	1 cut(s)	174
HaeIII	GGCC	1 cut(s)	115
Hin1I	GRCGYC	1 cut(s)	7
Hpy188III	TCNNGA	3 cut(s)	189, 260, 286
HpyAV	CCTTC	1 cut(s)	148
HpyCH4V	TGCA	3 cut(s)	161, 167, 244
HpyF10VI	GCNNNNNNNGC	5 cut(s)	142, 164, 167, 222, 241
HpyF3I	CTNAG	1 cut(s)	64
Hsp92I	GRCGYC	1 cut(s)	7
LpnPI	CCDG	6 cut(s)	51, 147, 156, 214, 369, 381
Lsp1109I	GCAGC	4 cut(s)	145, 179, 247, 418
LweI	GCATC	2 cut(s)	82, 231
MaeI	CTAG	2 cut(s)	338, 421
MboII	GAAGA	1 cut(s)	275
MhlI	GDGCHC	1 cut(s)	65
MnlI	CCTC	8 cut(s)	15, 82, 113, 116, 185, 267, 325, 384
MseI	TTAA	1 cut(s)	15
MslI	CAYNNNNRTG	1 cut(s)	17
MspA1I	CMGCKG	2 cut(s)	170, 238
MwoI	GCNNNNNNNGC	5 cut(s)	142, 164, 167, 222, 241
NmeAIII	GCCGAG	1 cut(s)	141
PaqCI	CACCTGC	1 cut(s)	152
Pfl23II	CGTACG	1 cut(s)	46
PkrI	GCNGC	5 cut(s)	160, 169, 237, 273, 408
Psp124BI	GAGCTC	1 cut(s)	65
PspFI	CCCAGC	1 cut(s)	170
PspLI	CGTACG	1 cut(s)	46
PstI	CTGCAG	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	17
SacI	GAGCTC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	5 cut(s)	159, 168, 236, 272, 407
SduI	GDGCHC	1 cut(s)	65
SfaNI	GCATC	2 cut(s)	82, 231
SfcI	CTRYAG	2 cut(s)	159, 226
SmiMI	CAYNNNNRTG	1 cut(s)	17
SsiI	CCGC	7 cut(s)	26, 99, 180, 209, 238, 271, 274
SspMI	CTAG	2 cut(s)	338, 421
SstI	GAGCTC	1 cut(s)	65
TaqI	TCGA	3 cut(s)	53, 188, 285
TauI	GCSGC	1 cut(s)	274
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TseI	GCWGC	4 cut(s)	158, 167, 235, 406
TspDTI	ATGAA	2 cut(s)	28, 329
XspI	CTAG	2 cut(s)	338, 421

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.