Rroxscaffold_1G00015600

oxidosqualene cyclase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000175
Physical Location & Seq
Forward (+)
19390105 .. 19392117
2013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00015600.1

Sequence Viewer

Length: 2013 bp
ATGGATACCCTCTTTGATAGATTTTCTGGTCCCATAGAGGGACTTTATTTTGGCCATGCCCCAACTTCAATCACTTTCAATCCAAATCTTGCAGACGGGTGCAAAGTCACTCAGGAATCCAGCAATGCACTTATCCATCCAGCTAACTTAGACCATCCAAGTTATTTGAGTAAGTCTTTGAGCCCAGCTTCTGAGGAAGAAACTGTTGATGTTAGTTACTCCAACAATCCTGTTATCAAGTACATAAGTGATATTCTTCTGGATGAAGACCTGGAGGACGGGAGCGGCATACTGCAGGACTATTTGGCCGTCCAAGCTGCTGAAAAATCTTTCTATGATGTCCTTAATCCGAATGATCCTCATTCACCCAACAAGGCTTCTCTTGGTGAATCGTTTTCAGATACTCTTTTGGTTTCAGATTCACTTTTTGAGATGCAGAGTCTTGGAAATTTCGGAAAAGTTGGGGAGGCAGACAAGCTCCTTCCTATTGGGGAATTCTATATCATTGACAAGGAGAGGTACGAATTACTGCCTGCAGCACGTTCTAACCTGGTGAAAGGGAATCTGGCCTCCGATAAAAAAAATGATGTAAACAACCCAACAAATGGTGTGAAGGGAAAGAAAAATCATCGCAGAGAGGATGGAGATTATCCAGAGGAAGGGAGAAGCAGCAAGCAGTCAGTTGTTTCTGCTGATGACTCTGAGCCTCAAGAAATGTTTGATAAGGTGTTACTCTGTCAAGCTGAGCATCATCATCGGGAGTGGGAATCTTGTACGCCTCATTGCTCTATGAAAAGGGAGGAAACAGAGCAGTTGCAGCAAAACAGGCAGCCTAAAGGATCTAAAACAAATCGTTCAAAGCGACAAAATAAAGATGAGGAAGGAGTAGATTTGACCACCATGCTAAATCAATGTGCACAAGCCGTGGCAAGCTATGAACAAGGAACGGCGAGTGAACTACTCAAGAAGATAAGGCAGCACTCCTCCCCCCATGGACATGCAACTCAGAGATTAGCTCACTACTTTGCCAATGGCCTAGAGGCGCGGCTTACTGGTGTCGGAACCCCATCATTTTCACCTCTCTTTAGTAGGCAGACATCAGCCGCTGAATACTTACTAGCTTACCAGGTATATACTACTTCATGCCCTTTCAAGATGATGTCACAATTATTTGCCAACAGAGCAATCATGAAGCTAGCAAAAAATGAAACAAGGCTTCACATTATTGATTTTGGTATTTCTTATGGTTTCCAATGGCCCTTCCTTATCCAACATCTCTCCGAGAGACCTAATGGACCTCCCAAGTTACACATCACAGGAATTGAGCTTCCGCAACCTGGTTTTCGACCTAGAGAAAGGGTTGAAGAGACCGGACGTCGCCTAGCAAGGTATTGTGCAAAGTTCAATGTCCCGTTTGAGTACGATGTCATTGCTCAAAGATGGGAAACCATACAATGTGAGGATCTTAAAATTGACCGAAACGAACTGGTAGTGGTCAATTGTCTGAACAGGTTAAAGCACATACATGATGAGACGGTGATGGAGAACTCTCCGAGAGATACTGTCCTGAATTTGATCAAGAATATAGATCCCGACCTTTTCATTCATGGGATTGTCAATGGGATGTACAATACACCCTTCTTTGCCACACGGTTCAAAGAGGCACTCTTGCATTACTATGCCGTGTTTGATATGTTTGAAGCAACTGTTCCTCGTGAAGATGAACGGCGGATGATTATCGAGAGAGAAAAATGTGGTACAGACATAATGAATATCGTAGCATGCGAGGGAGTGGAAAGGTTTCAAAGACCTGAGACATATAAGAAATGGCAGATCAGGAATGTGAGGGCTGGTTTGAAGCAGCTCCCGTTGGACCAGGAGGAGTTGAAGAAAGTGAAGAACTTATATAAGGGTTATCATAATGATTTTAGAGTTGAAGAAGATGGGCAGTGGATACTGCAGGGATGGAAAGGAAGGATACTCCGGGCTCTTTCACTTTGGACTTCTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 map00100 map00909 map01100 map01110
Pfam Domains
Protein Families
Prenyltrans SQHop_cyclase_C SQHop_cyclase_N

Protein Analysis

670

Amino Acids

76.46

Weight (kDa)

5.89

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 299 - 668 6.8e-117 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1378
AccB7I CCANNNNNTGG 1 cut(s) 605
AccBSI CCGCTC 1 cut(s) 285
AccII CGCG 1 cut(s) 1045
AciI CCGC 5 cut(s) 285, 1045, 1104, 1331, 1729
AclWI GGATC 4 cut(s) 350, 847, 1470, 1583
AcoI YGGCCR 2 cut(s) 52, 306
AcsI RAATTY 3 cut(s) 448, 494, 1570
AcyI GRCGYC 1 cut(s) 1375
AfaI GTAC 6 cut(s) 242, 521, 775, 1421, 1628, 1759
AfiI CCNNNNNNNGG 4 cut(s) 38, 605, 659, 1337
AhdI GACNNNNNGTC 1 cut(s) 1374
AjnI CCWGG 5 cut(s) 270, 549, 1125, 1336, 1875
Alw21I GWGCWC 1 cut(s) 919
Alw26I GTCTC 4 cut(s) 1279, 1361, 1526, 1808
Alw44I GTGCAC 1 cut(s) 915
AlwI GGATC 4 cut(s) 350, 847, 1470, 1583
AlwNI CAGNNNCTG 2 cut(s) 191, 1106
AoxI GGCC 5 cut(s) 52, 306, 567, 1033, 1256
ApaLI GTGCAC 1 cut(s) 915
ApeKI GCWGC 7 cut(s) 317, 536, 669, 817, 829, 976, 1861
ApoI RAATTY 3 cut(s) 448, 494, 1570
Asp700I GAANNNNTTC 1 cut(s) 1800
AspLEI GCGC 1 cut(s) 1045
AspS9I GGNCC 4 cut(s) 29, 1257, 1295, 1873
AsuC2I CCSGG 1 cut(s) 1985
AsuHPI GGTGA 5 cut(s) 357, 398, 565, 1068, 1549
AsuNHI GCTAGC 1 cut(s) 1195
AvaII GGWCC 3 cut(s) 29, 1295, 1873
BaeGI GKGCMC 1 cut(s) 919
BalI TGGCCA 1 cut(s) 54
BanII GRGCYC 2 cut(s) 185, 1990
BauI CACGAG 1 cut(s) 1713
BbsI GAAGAC 1 cut(s) 273
Bbv12I GWGCWC 1 cut(s) 919
BbvI GCAGC 7 cut(s) 304, 548, 681, 829, 841, 988, 1873
BccI CCATC 8 cut(s) 144, 162, 635, 1075, 1434, 1534, 1937, 1959
BceAI ACGGC 5 cut(s) 293, 908, 963, 1667, 1742
BcgI CGANNNNNNTGC 4 cut(s) 737, 771, 1412, 1446
BciT130I CCWGG 5 cut(s) 272, 551, 1127, 1338, 1877
BciVI GTATCC 2 cut(s) 1947, 1971
BclI TGATCA 1 cut(s) 1575
BcnI CCSGG 1 cut(s) 1985
BcoDI GTCTC 4 cut(s) 1279, 1361, 1526, 1808
BfaI CTAG 6 cut(s) 1037, 1118, 1196, 1350, 1382, 2011
BfmI CTRYAG 3 cut(s) 293, 534, 1958
BfuI GTATCC 2 cut(s) 1947, 1971
BlpI GCTNAGC 1 cut(s) 744
Bme1390I CCNGG 6 cut(s) 272, 551, 1127, 1338, 1877, 1985
Bme18I GGWCC 3 cut(s) 29, 1295, 1873
BmeRI GACNNNNNGTC 1 cut(s) 1374
BmgT120I GGNCC 4 cut(s) 29, 1257, 1295, 1873
BmiI GGNNCC 2 cut(s) 31, 1063
BmrFI CCNGG 6 cut(s) 272, 551, 1127, 1338, 1877, 1985
BmsI GCATC 2 cut(s) 423, 757
BmtI GCTAGC 1 cut(s) 1199
BpiI GAAGAC 1 cut(s) 273
BplI GAGNNNNNCTC 2 cut(s) 1000, 1032
BpmI CTGGAG 1 cut(s) 293
Bpu1102I GCTNAGC 1 cut(s) 744
BpuEI CTTGAG 2 cut(s) 693, 947
BpuMI CCSGG 1 cut(s) 1985
BsaBI GATNNNNATC 1 cut(s) 1736
BsaHI GRCGYC 1 cut(s) 1375
BsaI GGTCTC 2 cut(s) 1279, 1361
BsaJI CCNNGG 2 cut(s) 924, 991
BsaWI WCCGGW 1 cut(s) 1370
Bsc4I CCNNNNNNNGG 4 cut(s) 38, 605, 659, 1337
Bse1I ACTGG 2 cut(s) 1057, 1491
Bse3DI GCAATG 3 cut(s) 130, 781, 1428
Bse8I GATNNNNATC 1 cut(s) 1736
BseBI CCWGG 5 cut(s) 272, 551, 1127, 1338, 1877
BseDI CCNNGG 2 cut(s) 924, 991
BseGI GGATG 7 cut(s) 136, 154, 268, 646, 1629, 1737, 1970
BseJI GATNNNNATC 1 cut(s) 1736
BseLI CCNNNNNNNGG 4 cut(s) 38, 605, 659, 1337
BseMI GCAATG 3 cut(s) 130, 781, 1428
BseMII CTCAG 6 cut(s) 125, 183, 693, 735, 1019, 1803
BseNI ACTGG 2 cut(s) 1057, 1491
BseRI GAGGAG 2 cut(s) 973, 1895
BseSI GKGCMC 1 cut(s) 919
BseXI GCAGC 7 cut(s) 304, 548, 681, 829, 841, 988, 1873
BseYI CCCAGC 1 cut(s) 184
Bsh1236I CGCG 1 cut(s) 1045
BshFI GGCC 5 cut(s) 54, 308, 569, 1035, 1258
BsiHKAI GWGCWC 1 cut(s) 919
BsiSI CCGG 2 cut(s) 1371, 1984
BslFI GGGAC 3 cut(s) 15, 54, 1394
BslI CCNNNNNNNGG 4 cut(s) 38, 605, 659, 1337
BsmAI GTCTC 4 cut(s) 1279, 1361, 1526, 1808
BsmBI CGTCTC 1 cut(s) 1526
BsmFI GGGAC 3 cut(s) 15, 54, 1394
BsnI GGCC 5 cut(s) 54, 308, 569, 1035, 1258
Bso31I GGTCTC 2 cut(s) 1279, 1361
Bsp1286I GDGCHC 3 cut(s) 185, 919, 1990
Bsp1407I TGTACA 1 cut(s) 1626
Bsp143I GATC 6 cut(s) 355, 839, 1462, 1575, 1588, 1833
Bsp1720I GCTNAGC 1 cut(s) 744
Bsp19I CCATGG 1 cut(s) 991
BspACI CCGC 5 cut(s) 285, 1045, 1104, 1331, 1729
BspANI GGCC 5 cut(s) 54, 308, 569, 1035, 1258
BspCNI CTCAG 6 cut(s) 124, 184, 694, 736, 1018, 1804
BspFNI CGCG 1 cut(s) 1045
BspHI TCATGA 1 cut(s) 1188
BspLI GGNNCC 2 cut(s) 31, 1063
BspMAI CTGCAG 3 cut(s) 297, 538, 1962
BspOI GCTAGC 1 cut(s) 1199
BspPI GGATC 4 cut(s) 350, 847, 1470, 1583
BspTNI GGTCTC 2 cut(s) 1279, 1361
BsrBI CCGCTC 1 cut(s) 285
BsrDI GCAATG 3 cut(s) 130, 781, 1428
BsrGI TGTACA 1 cut(s) 1626
BsrI ACTGG 2 cut(s) 1057, 1491
BssECI CCNNGG 2 cut(s) 924, 991
BssMI GATC 6 cut(s) 355, 839, 1462, 1575, 1588, 1833
BssNI GRCGYC 1 cut(s) 1375
BssSI CACGAG 1 cut(s) 1713
BssT1I CCWWGG 1 cut(s) 991
Bst2BI CACGAG 1 cut(s) 1713
Bst2UI CCWGG 5 cut(s) 272, 551, 1127, 1338, 1877
Bst4CI ACNGT 5 cut(s) 205, 1537, 1564, 1653, 1708
Bst6I CTCTTC 1 cut(s) 1359
BstACI GRCGYC 1 cut(s) 1375
BstAUI TGTACA 1 cut(s) 1626
BstC8I GCNNGC 5 cut(s) 534, 674, 931, 1197, 1783
BstDEI CTNAG 7 cut(s) 111, 148, 192, 702, 744, 1005, 1812
BstDSI CCRYGG 2 cut(s) 924, 991
BstF5I GGATG 7 cut(s) 136, 154, 268, 646, 1629, 1737, 1970
BstFNI CGCG 1 cut(s) 1045
BstHHI GCGC 1 cut(s) 1045
BstKTI GATC 6 cut(s) 358, 842, 1465, 1578, 1591, 1836
BstMAI GTCTC 4 cut(s) 1279, 1361, 1526, 1808
BstMBI GATC 6 cut(s) 355, 839, 1462, 1575, 1588, 1833
BstMWI GCNNNNNNNGC 4 cut(s) 314, 817, 826, 1181
BstNI CCWGG 5 cut(s) 272, 551, 1127, 1338, 1877
BstNSI RCATGY 2 cut(s) 1001, 1785
BstSCI CCNGG 6 cut(s) 270, 549, 1125, 1336, 1875, 1983
BstSFI CTRYAG 3 cut(s) 293, 534, 1958
BstSLI GKGCMC 1 cut(s) 919
BstUI CGCG 1 cut(s) 1045
BstV1I GCAGC 7 cut(s) 304, 548, 681, 829, 841, 988, 1873
BstV2I GAAGAC 1 cut(s) 273
BstX2I RGATCY 3 cut(s) 839, 1462, 1588
BstYI RGATCY 3 cut(s) 839, 1462, 1588
BsuI GTATCC 2 cut(s) 1947, 1971
BsuRI GGCC 5 cut(s) 54, 308, 569, 1035, 1258
BtgI CCRYGG 2 cut(s) 924, 991
BtgZI GCGATG 1 cut(s) 614
BtsCI GGATG 7 cut(s) 136, 154, 268, 646, 1629, 1737, 1970
BtsI GCAGTG 1 cut(s) 1955
BtsIMutI CAGTG 1 cut(s) 1955
Cac8I GCNNGC 5 cut(s) 534, 674, 931, 1197, 1783
CaiI CAGNNNCTG 2 cut(s) 191, 1106
CciI TCATGA 1 cut(s) 1188
CfoI GCGC 1 cut(s) 1045
Cfr13I GGNCC 4 cut(s) 29, 1257, 1295, 1873
CsiI ACCWGGT 3 cut(s) 549, 1125, 1336
Csp6I GTAC 6 cut(s) 241, 520, 774, 1420, 1627, 1758
CviAII CATG 9 cut(s) 56, 901, 992, 998, 1143, 1189, 1526, 1607, 1782
CviQI GTAC 6 cut(s) 241, 520, 774, 1420, 1627, 1758
DdeI CTNAG 7 cut(s) 111, 148, 192, 702, 744, 1005, 1812
DpnI GATC 6 cut(s) 357, 841, 1464, 1577, 1590, 1835
DpnII GATC 6 cut(s) 355, 839, 1462, 1575, 1588, 1833
DriI GACNNNNNGTC 1 cut(s) 1374
EaeI YGGCCR 2 cut(s) 52, 306
Eam1104I CTCTTC 1 cut(s) 1359
Eam1105I GACNNNNNGTC 1 cut(s) 1374
EarI CTCTTC 1 cut(s) 1359
EciI GGCGGA 1 cut(s) 1744
Eco130I CCWWGG 1 cut(s) 991
Eco24I GRGCYC 2 cut(s) 185, 1990
Eco31I GGTCTC 2 cut(s) 1279, 1361
Eco47I GGWCC 3 cut(s) 29, 1295, 1873
EcoRI GAATTC 1 cut(s) 494
EcoRII CCWGG 5 cut(s) 270, 549, 1125, 1336, 1875
EcoT14I CCWWGG 1 cut(s) 991
EcoT38I GRGCYC 2 cut(s) 185, 1990
ErhI CCWWGG 1 cut(s) 991
Esp3I CGTCTC 1 cut(s) 1526
FaeI CATG 9 cut(s) 59, 904, 995, 1001, 1146, 1192, 1529, 1610, 1785
FaqI GGGAC 3 cut(s) 15, 54, 1394
FatI CATG 9 cut(s) 55, 900, 991, 997, 1142, 1188, 1525, 1606, 1781
FbaI TGATCA 1 cut(s) 1575
FokI GGATG 7 cut(s) 123, 141, 275, 653, 1636, 1744, 1977
FriOI GRGCYC 2 cut(s) 185, 1990
FspBI CTAG 6 cut(s) 1037, 1118, 1196, 1350, 1382, 2011
GlaI GCGC 1 cut(s) 1044
GsaI CCCAGC 1 cut(s) 188
GsuI CTGGAG 1 cut(s) 293
HaeIII GGCC 5 cut(s) 54, 308, 569, 1035, 1258
HapII CCGG 2 cut(s) 1371, 1984
HhaI GCGC 1 cut(s) 1045
Hin1I GRCGYC 1 cut(s) 1375
Hin1II CATG 9 cut(s) 59, 904, 995, 1001, 1146, 1192, 1529, 1610, 1785
Hin6I GCGC 1 cut(s) 1043
HinP1I GCGC 1 cut(s) 1043
HinfI GANTC 7 cut(s) 116, 389, 419, 439, 562, 698, 767
HpaII CCGG 2 cut(s) 1371, 1984
HphI GGTGA 5 cut(s) 357, 398, 565, 1068, 1549
Hpy166II GTNNAC 3 cut(s) 592, 917, 956
Hpy8I GTNNAC 3 cut(s) 592, 917, 956
Hpy99I CGWCG 1 cut(s) 1380
HpyAV CCTTC 7 cut(s) 491, 607, 653, 875, 1270, 1648, 1968
HpyCH4III ACNGT 5 cut(s) 205, 1537, 1564, 1653, 1708
HpyCH4IV ACGT 2 cut(s) 541, 1375
HpyF10VI GCNNNNNNNGC 4 cut(s) 314, 817, 826, 1181
HpyF3I CTNAG 7 cut(s) 111, 148, 192, 702, 744, 1005, 1812
HpySE526I ACGT 2 cut(s) 541, 1375
Hsp92I GRCGYC 1 cut(s) 1375
Hsp92II CATG 9 cut(s) 59, 904, 995, 1001, 1146, 1192, 1529, 1610, 1785
HspAI GCGC 1 cut(s) 1043
Ksp22I TGATCA 1 cut(s) 1575
Kzo9I GATC 6 cut(s) 355, 839, 1462, 1575, 1588, 1833
LmnI GCTCC 3 cut(s) 282, 483, 1869
Lsp1109I GCAGC 7 cut(s) 304, 548, 681, 829, 841, 988, 1873
LweI GCATC 2 cut(s) 423, 757
MabI ACCWGGT 3 cut(s) 549, 1125, 1336
MaeI CTAG 6 cut(s) 1037, 1118, 1196, 1350, 1382, 2011
MaeII ACGT 2 cut(s) 541, 1375
MaeIII GTNAC 5 cut(s) 106, 215, 729, 1161, 1305
MalI GATC 6 cut(s) 357, 841, 1464, 1577, 1590, 1835
MbiI CCGCTC 1 cut(s) 285
MboI GATC 6 cut(s) 355, 839, 1462, 1575, 1588, 1833
MfeI CAATTG 1 cut(s) 1498
MflI RGATCY 3 cut(s) 839, 1462, 1588
MhlI GDGCHC 3 cut(s) 185, 919, 1990
MlsI TGGCCA 1 cut(s) 54
MluCI AATT 8 cut(s) 448, 494, 524, 1166, 1320, 1470, 1498, 1570
MluNI TGGCCA 1 cut(s) 54
MlyI GAGTC 2 cut(s) 448, 692
MmeI TCCRAC 4 cut(s) 246, 1039, 1294, 1851
Mox20I TGGCCA 1 cut(s) 54
MroXI GAANNNNTTC 1 cut(s) 1800
MscI TGGCCA 1 cut(s) 54
MseI TTAA 3 cut(s) 345, 1467, 1514
MslI CAYNNNNRTG 3 cut(s) 996, 1524, 1677
Msp20I TGGCCA 1 cut(s) 54
MspA1I CMGCKG 1 cut(s) 1106
MspI CCGG 2 cut(s) 1371, 1984
MspR9I CCNGG 6 cut(s) 272, 551, 1127, 1338, 1877, 1985
MunI CAATTG 1 cut(s) 1498
MvaI CCWGG 5 cut(s) 272, 551, 1127, 1338, 1877
MvnI CGCG 1 cut(s) 1045
MwoI GCNNNNNNNGC 4 cut(s) 314, 817, 826, 1181
NciI CCSGG 1 cut(s) 1985
NcoI CCATGG 1 cut(s) 991
NdeII GATC 6 cut(s) 355, 839, 1462, 1575, 1588, 1833
NheI GCTAGC 1 cut(s) 1195
NlaIII CATG 9 cut(s) 59, 904, 995, 1001, 1146, 1192, 1529, 1610, 1785
NlaIV GGNNCC 2 cut(s) 31, 1063
NmuCI GTSAC 2 cut(s) 106, 1161
NspI RCATGY 2 cut(s) 1001, 1785
PaeI GCATGC 1 cut(s) 1785
PagI TCATGA 1 cut(s) 1188
PcsI WCGNNNNNNNCGW 2 cut(s) 859, 1782
PdmI GAANNNNTTC 1 cut(s) 1800
PfeI GAWTC 5 cut(s) 116, 389, 419, 562, 767
PflMI CCANNNNNTGG 1 cut(s) 605
PleI GAGTC 2 cut(s) 447, 692
PpsI GAGTC 2 cut(s) 447, 692
Psp6I CCWGG 5 cut(s) 270, 549, 1125, 1336, 1875
PspFI CCCAGC 1 cut(s) 184
PspGI CCWGG 5 cut(s) 270, 549, 1125, 1336, 1875
PspN4I GGNNCC 2 cut(s) 31, 1063
PspPI GGNCC 4 cut(s) 29, 1257, 1295, 1873
PstI CTGCAG 3 cut(s) 297, 538, 1962
PstNI CAGNNNCTG 2 cut(s) 191, 1106
PsuI RGATCY 3 cut(s) 839, 1462, 1588
RsaI GTAC 6 cut(s) 242, 521, 775, 1421, 1628, 1759
RsaNI GTAC 6 cut(s) 241, 520, 774, 1420, 1627, 1758
RseI CAYNNNNRTG 3 cut(s) 996, 1524, 1677
SaqAI TTAA 3 cut(s) 345, 1467, 1514
Sau3AI GATC 6 cut(s) 355, 839, 1462, 1575, 1588, 1833
Sau96I GGNCC 4 cut(s) 29, 1257, 1295, 1873
SchI GAGTC 2 cut(s) 448, 692
ScrFI CCNGG 6 cut(s) 272, 551, 1127, 1338, 1877, 1985
SduI GDGCHC 3 cut(s) 185, 919, 1990
SexAI ACCWGGT 3 cut(s) 549, 1125, 1336
SfaNI GCATC 2 cut(s) 423, 757
SfcI CTRYAG 3 cut(s) 293, 534, 1958
SinI GGWCC 3 cut(s) 29, 1295, 1873
SmiMI CAYNNNNRTG 3 cut(s) 996, 1524, 1677
SmlI CTYRAG 2 cut(s) 708, 962
SmoI CTYRAG 2 cut(s) 708, 962
SphI GCATGC 1 cut(s) 1785
Sse9I AATT 8 cut(s) 448, 494, 524, 1166, 1320, 1470, 1498, 1570
SsiI CCGC 5 cut(s) 285, 1045, 1104, 1331, 1729
SspMI CTAG 6 cut(s) 1037, 1118, 1196, 1350, 1382, 2011
StyD4I CCNGG 6 cut(s) 270, 549, 1125, 1336, 1875, 1983
StyI CCWWGG 1 cut(s) 991
TaaI ACNGT 5 cut(s) 205, 1537, 1564, 1653, 1708
TaiI ACGT 2 cut(s) 544, 1378
TaqI TCGA 2 cut(s) 1345, 1740
TaqII GACCGA 1 cut(s) 1491
TasI AATT 8 cut(s) 448, 494, 524, 1166, 1320, 1470, 1498, 1570
TatI WGTACW 2 cut(s) 240, 1626
TauI GCSGC 3 cut(s) 288, 1048, 1106
TfiI GAWTC 5 cut(s) 116, 389, 419, 562, 767
Tru1I TTAA 3 cut(s) 345, 1467, 1514
Tru9I TTAA 3 cut(s) 345, 1467, 1514
TscAI CASTG 1 cut(s) 1955
TseFI GTSAC 2 cut(s) 106, 1161
TseI GCWGC 7 cut(s) 317, 536, 669, 817, 829, 976, 1861
Tsp45I GTSAC 2 cut(s) 106, 1161
TspRI CASTG 1 cut(s) 1955
Van91I CCANNNNNTGG 1 cut(s) 605
VneI GTGCAC 1 cut(s) 915
VpaK11BI GGWCC 3 cut(s) 29, 1295, 1873
XapI RAATTY 3 cut(s) 448, 494, 1570
XceI RCATGY 2 cut(s) 1001, 1785
XmnI GAANNNNTTC 1 cut(s) 1800
XspI CTAG 6 cut(s) 1037, 1118, 1196, 1350, 1382, 2011
ZraI GACGTC 1 cut(s) 1376
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.