Rorug05G0373300

Belongs to the GRAS family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000175
Physical Location & Seq
Reverse (-)
50265860 .. 50266232
373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0373300.1

Sequence Viewer

Length: 282 bp
ATGATAAGCATCGATGAAAACAGTGTATGGGAAGAATATGCGAAGTCTTATGATGAAGCTGTAAGCTTTCGGTTTAAAAGAATCCAAAGTTGGGATGATATAGTTTATTTGTGTGGCAAAGATAGAGCCACTGGAAAGGGTGCTGAAACAGGTTTTGAAGCCGTTGAGGTTATGACTCCTCCTGTTAATGAAGATAATCATGTTGATTTGGAAGGTGATGACCAAGCATCAGAAGATATTCACATCATTGAAGACATTTCACCGAACCAAACAAGTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAS

Protein Analysis

93

Amino Acids

10.49

Weight (kDa)

4.1

Isoelectric Point (pI)

44.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 91
AgsI TTSAA 2 cut(s) 158, 251
AjuI GAANNNNNNNTTGG 2 cut(s) 73, 105
AluBI AGCT 2 cut(s) 59, 66
AluI AGCT 2 cut(s) 59, 66
Asp700I GAANNNNTTC 1 cut(s) 237
AsuHPI GGTGA 2 cut(s) 227, 252
BbsI GAAGAC 1 cut(s) 258
BceAI ACGGC 1 cut(s) 146
BmsI GCATC 2 cut(s) 18, 236
BpiI GAAGAC 1 cut(s) 258
Bsa29I ATCGAT 1 cut(s) 12
BsaBI GATNNNNATC 1 cut(s) 8
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse1I ACTGG 1 cut(s) 136
Bse8I GATNNNNATC 1 cut(s) 8
BseCI ATCGAT 1 cut(s) 12
BseGI GGATG 1 cut(s) 100
BseJI GATNNNNATC 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 91
BseNI ACTGG 1 cut(s) 136
BseRI GAGGAG 1 cut(s) 168
BshVI ATCGAT 1 cut(s) 12
BslI CCNNNNNNNGG 1 cut(s) 91
BspDI ATCGAT 1 cut(s) 12
BsrI ACTGG 1 cut(s) 136
Bst4CI ACNGT 1 cut(s) 23
BstDEI CTNAG 1 cut(s) 279
BstF5I GGATG 1 cut(s) 100
BstV2I GAAGAC 1 cut(s) 258
Bsu15I ATCGAT 1 cut(s) 12
BsuTUI ATCGAT 1 cut(s) 12
BtsCI GGATG 1 cut(s) 100
BtsIMutI CAGTG 2 cut(s) 28, 129
ClaI ATCGAT 1 cut(s) 12
CviAII CATG 1 cut(s) 200
CviJI RGCY 4 cut(s) 59, 66, 128, 161
CviKI_1 RGCY 4 cut(s) 59, 66, 128, 161
DdeI CTNAG 1 cut(s) 279
DraI TTTAAA 1 cut(s) 76
FaeI CATG 1 cut(s) 203
FaiI YATR 6 cut(s) 28, 39, 51, 101, 173, 201
FatI CATG 1 cut(s) 199
FokI GGATG 1 cut(s) 107
Hin1II CATG 1 cut(s) 203
HindIII AAGCTT 1 cut(s) 64
HinfI GANTC 2 cut(s) 81, 175
HphI GGTGA 2 cut(s) 227, 252
Hpy188I TCNGA 1 cut(s) 232
HpyAV CCTTC 1 cut(s) 206
HpyCH4III ACNGT 1 cut(s) 23
HpyF3I CTNAG 1 cut(s) 279
Hsp92II CATG 1 cut(s) 203
LpnPI CCDG 3 cut(s) 117, 135, 195
LweI GCATC 2 cut(s) 18, 236
MboII GAAGA 4 cut(s) 44, 203, 245, 263
MlyI GAGTC 1 cut(s) 169
MnlI CCTC 2 cut(s) 160, 189
MroXI GAANNNNTTC 1 cut(s) 237
MseI TTAA 2 cut(s) 75, 186
NlaIII CATG 1 cut(s) 203
PdmI GAANNNNTTC 1 cut(s) 237
PfeI GAWTC 1 cut(s) 81
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
SaqAI TTAA 2 cut(s) 75, 186
SchI GAGTC 1 cut(s) 169
SetI ASST 5 cut(s) 61, 68, 154, 171, 217
SfaNI GCATC 2 cut(s) 18, 236
SgeI CNNG 5 cut(s) 144, 162, 194, 212, 236
TaaI ACNGT 1 cut(s) 23
TaqI TCGA 1 cut(s) 12
TfiI GAWTC 1 cut(s) 81
Tru1I TTAA 2 cut(s) 75, 186
Tru9I TTAA 2 cut(s) 75, 186
TscAI CASTG 2 cut(s) 28, 136
TspDTI ATGAA 3 cut(s) 30, 69, 204
TspRI CASTG 2 cut(s) 28, 136
XmnI GAANNNNTTC 1 cut(s) 237
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.