Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0000175

Physical Location & Seq

Genomic Coordinates Forward (+)

71537648 .. 71539635

Gene Structure 1988 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G040550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1938 bp

ATGGATACCTTTTTTGATAGAGTTTCTGGTCCTACGGAAAGATTCAAATTTGGCCATGCCTCAACTTCAGTCACTTCCAATCCAAATCTTGACAACAGGTTTCAAATAAATCAAGAATCCACCGATACACTTTTCCATCCCAGTGATTCAGCTACGTCTTTGAGCCCGGATTCCGAGGAAGAAACTTTTGATATAAATTACTTCAATAATCCGATGCTCAAGTACATTAGTGATATTCTTCTGGATGAAGAACTGGAAGGAAAGAACTGCATGTTGCAGGACAGTTTGTCTCTCCAAGCTGCTGAAAAATCTTTCTACGACGTCCTTAATCCGAAGGATCCTCCTCCACCCAACCAACTCCCTCTGCCTGTGTACCAAAACTTTGAGCACTCAGATGATGATTCCACTCATATGTTGCACCAATCTTCTCTTGTTGTGTCTTTTTCAGATACTCTTTTGGTTTCAGATTCTCATTTCAAGAAGCAAAGTCTTGGGAATTTCGAACAGGCTGGGGAGGCAAACAAGTTCCTTACAAATGGGAATTTTGGTTTCATTAATGAGGAGAGGTACCAAACAAATGGACTAAAGGGAAAGAAGAATCATCAAAGAGATGATGAAAATTATCCAGAAGAAGGGAGAAACAGCAAACAGTCGGTTGTTTCTGCCGATGACTCTGAGCCTCAAGAAATGTTTGATAAGGTGTTACTCTGTCAAGGTGATCATCATCAGGAGTGGGAGTCTTGTACTCCTCATTGCTCTATGAAAAGGGAGGGAGCAGAGCAGTTGCAGCATAACAAGCAGTCAAAAGGATCTAAAACAAATCGTTCAAAGCGACAAAATAAAGATGAGGAAGGAGTAGATTTGACCACCATGCTAAATCAATGTGCACAAGCCGTGGCAAGCTATGAACAAGGAACGGCGAGTGAACTACTCAAGAAGATAAGGCGGCACTCCTCCCCCCATGGACATGCAACTCAGAGATTAGCTCACTACTTTGCCAATGGCCTAGAGGCGCGGCTTACTGGTGTCGGAACCCCATCATTTTCACCTCTCTTTAGTAGGCAGACATCAGCTGCTGAAATCCTACAAGCGTACGAGGTATTTACTACTTCAACCCCTTTCAAGACGATATCACAATTCCTTGCCAACAGAACAATCATGAAGCTAGCAAGAAATGAAACAAGGCTTCACATTATTGATTTTGGTATTTCTTATGGTTTCCAATGGCCTTGCCTTATCCAACATCTCTCCAATAGACCTAACGGACCACTAAAAAGGGTTGAAGAGACCGGACATCGCCTAGCAAGGTATTGTGCAAAGTTCAGTGTGCCGTTTGAGTACAATGTCATTGCTAAAAAATGGGAAACTATTCAATGTGAGGATCTTAAACTTGACAAAAAGGAGCTGGTAGTGGTTAATTGTTTGCACCGGTTAAAGCACATACATGATGAGACGGTTATGGAGAACTCTCCGAGAGATGCCGTCCTGAAGTTGATCAAGAATATAAACCCCAACCTTTTCATTCATGGGATTAGCAATGGGACACACAATACACCCTTCTTTGCTACACGGTTTAGAGAGGCACTCTTGCACTACTATGCAGTGTTTGATATGTTTGAAGCAACCATTCCTCGTGAGGAGAATCGTCGGATGATGTTGGAGAAAGACTTCCATGGTAGAGACATAATGAATATCATAGCATGCGAGGGAGTGGAAAGAGTTGAAAGGCCTGAGACTTACAAGAAGTGGCAGATCAGGAATGTGAGGGCTGGGTTGAAGCAGCTTCCACTGGACCGGGAACTATTGAAGAAAGCGAAGAAATTGTCGGAGCTAATGGGTTATCATAATGATTTTAGACTTGATGAAGATGGGCATTGGATGCTGCATGGATGGAAAGGAAGGATCATCACTGCTCTTTCATTTTGGAAACCTGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

645

Amino Acids

74.18

Weight (kDa)

6.35

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	289 - 643	1.2e-104	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G46600 AT3G46600 AT3G46600 AT5G59450
fragaria_vesca	FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36690 FvH4_3g36691 FvH4_3g36700 FvH4_3g36711 FvH4_3g36711 FvH4_3g36720 FvH4_3g36730 FvH4_3g36760
malus_domestica	MD03G1088900.v1.1 MD03G1089100.v1.1 MD03G1089200.v1.1 MD03G1089300.v1.1 MD11G1097900.v1.1 MD11G1098000.v1.1 MD11G1098100.v1.1 MD11G1098400.v1.1 MD11G1098900.v1.1
prunus_persica	Prupe.6G073300_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073400_v2.0.a1 Prupe.6G073500_v2.0.a1 Prupe.6G073600_v2.0.a1 Prupe.6G073700_v2.0.a1 Prupe.6G073800_v2.0.a1 Prupe.I004400_v2.0.a1 Prupe.I004500_v2.0.a1
pyrus_communis	pycom03g07050 pycom03g07060 pycom03g07070 pycom03g07110 pycom04g11870 pycom11g08270 pycom11g08280
rosa_chinensis	RchiOBHm_Chr5g0065591 RchiOBHm_Chr5g0065601 RchiOBHm_Chr5g0065621 RchiOBHm_Chr5g0065631 RchiOBHm_Chr5g0065641 RchiOBHm_Chr5g0065651 RchiOBHm_Chr5g0065671 RchiOBHm_Chr5g0065721 RchiOBHm_Chr5g0065731 RchiOBHm_Chr5g0065751 RchiOBHm_Chr5g0065791 RchiOBHm_Chr5g0065811
rosa_laevigata	RLG00000035800 RLG00000035801 RLG00000035803 RLG00000035804 RLG00000035805 RLG00000035806 RLG00000035807 RLG00000035808 RLG00000035809 RLG00000035810 RLG00000035813 RLG00000035814 RLG00000035816
rosa_multiflora	Rmu_co8233911.1_g000001 Rmu_co8258053.1_g000001 Rmu_co8279117.1_g000001 Rmu_sc0000235.1_g000004 Rmu_sc0000235.1_g000024 Rmu_sc0000235.1_g000060 Rmu_sc0000235.1_g000074 Rmu_sc0001010.1_g000001 Rmu_sc0001010.1_g000015 Rmu_sc0001010.1_g000030 Rmu_sc0001010.1_g000037 Rmu_sc0001010.1_g000043 Rmu_sc0001010.1_g000063 Rmu_sc0001010.1_g000066 Rmu_sc0003636.1_g000008 Rmu_sc0003636.1_g000011 Rmu_sc0003636.1_g000012 Rmu_sc0003636.1_g000015 Rmu_sc0005971.1_g000017 Rmu_sc0008231.1_g000001 Rmu_sc0032155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00015360 Rroxscaffold_1G00015390 Rroxscaffold_1G00015410 Rroxscaffold_1G00015430 Rroxscaffold_1G00015490 Rroxscaffold_1G00015520 Rroxscaffold_1G00015530 Rroxscaffold_1G00015550 Rroxscaffold_1G00015560 Rroxscaffold_1G00015580 Rroxscaffold_1G00015600 Rroxscaffold_1G00015610 Rroxscaffold_1G00015620 Rroxscaffold_1G00015630
rosa_rugosa	Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0372800 Rorug05G0373100 Rorug05G0373100 Rorug05G0373200 Rorug05G0373300 Rorug05G0373400 Rorug05G0373500 Rorug05G0373600 Rorug05G0373700 Rorug05G0378700
rosa_samantha	Rh5AG430900 Rh5AG431000 Rh5AG431100 Rh5AG431200 Rh5AG431700 Rh5AG431800 Rh5AG431900 Rh5AG432200 Rh5AG432500 Rh5BG445200 Rh5BG446000 Rh5BG447100 Rh5BG447200 Rh5BG447400 Rh5BG447800 Rh5BG447900 Rh5BG448000 Rh5BG448100 Rh5BG448300 Rh5BG448400 Rh5BG448500 Rh5BG448600 Rh5CG467400 Rh5CG468000 Rh5CG469000 Rh5CG469100 Rh5CG469400 Rh5CG469700 Rh5CG469900 Rh5CG470100 Rh5CG470200 Rh5CG470600 Rh5CG470700 Rh5CG470800 Rh5DG459500 Rh5DG459700 Rh5DG459800 Rh5DG460000 Rh5DG460900 Rh5DG461300 Rh5DG461500 Rh5DG461900 Rh5DG462000 Rh5DG462100
rosa_wichuraiana	Rw5G040420 Rw5G040430 Rw5G040440 Rw5G040470 Rw5G040480 Rw5G040500 Rw5G040510 Rw5G040530 Rw5G040550 Rw5G040560

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	324
Acc65I	GGTACC	1 cut(s)	567
AccB1I	GGYRCC	1 cut(s)	567
AccII	CGCG	1 cut(s)	1015
AciI	CCGC	2 cut(s)	946, 1015
AclWI	GGATC	5 cut(s)	332, 345, 817, 1389, 1910
AcoI	YGGCCR	1 cut(s)	52
AcsI	RAATTY	3 cut(s)	47, 496, 541
AcuI	CTGAAG	2 cut(s)	51, 1508
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	6 cut(s)	224, 374, 569, 745, 1094, 1340
AfiI	CCNNNNNNNGG	1 cut(s)	632
AgeI	ACCGGT	1 cut(s)	1428
AhdI	GACNNNNNGTC	1 cut(s)	286
AluBI	AGCT	9 cut(s)	152, 299, 903, 986, 1073, 1165, 1405, 1783, 1831
AluI	AGCT	9 cut(s)	152, 299, 903, 986, 1073, 1165, 1405, 1783, 1831
Alw21I	GWGCWC	2 cut(s)	390, 889
Alw26I	GTCTC	5 cut(s)	294, 1280, 1445, 1674, 1727
Alw44I	GTGCAC	1 cut(s)	885
AlwI	GGATC	5 cut(s)	332, 345, 817, 1389, 1910
AlwNI	CAGNNNCTG	1 cut(s)	1076
AoxI	GGCC	4 cut(s)	52, 1003, 1226, 1727
ApaLI	GTGCAC	1 cut(s)	885
ApeKI	GCWGC	5 cut(s)	299, 787, 1073, 1780, 1882
ApoI	RAATTY	3 cut(s)	47, 496, 541
ArsI	GACNNNNNNTTYG	2 cut(s)	1808, 1840
AseI	ATTAAT	1 cut(s)	555
AsiGI	ACCGGT	1 cut(s)	1428
Asp700I	GAANNNNTTC	2 cut(s)	1368, 1667
Asp718I	GGTACC	1 cut(s)	567
AspLEI	GCGC	1 cut(s)	1015
AspS9I	GGNCC	3 cut(s)	29, 1265, 1792
AsuC2I	CCSGG	2 cut(s)	167, 1796
AsuHPI	GGTGA	2 cut(s)	728, 1038
AsuII	TTCGAA	1 cut(s)	501
AsuNHI	GCTAGC	1 cut(s)	1165
AvaII	GGWCC	3 cut(s)	29, 1265, 1792
BaeGI	GKGCMC	1 cut(s)	889
BalI	TGGCCA	1 cut(s)	54
BamHI	GGATCC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	567
BanII	GRGCYC	1 cut(s)	167
BauI	CACGAG	1 cut(s)	1632
Bbv12I	GWGCWC	2 cut(s)	390, 889
BbvI	GCAGC	5 cut(s)	286, 799, 1060, 1792, 1869
BccI	CCATC	4 cut(s)	144, 1045, 1862, 1884
BceAI	ACGGC	4 cut(s)	878, 933, 1315, 1466
BclI	TGATCA	2 cut(s)	718, 1494
BcnI	CCSGG	2 cut(s)	167, 1796
BcoDI	GTCTC	5 cut(s)	294, 1280, 1445, 1674, 1727
BfaI	CTAG	4 cut(s)	1007, 1166, 1301, 1936
BisI	GCNGC	7 cut(s)	300, 788, 947, 1016, 1074, 1781, 1883
BlsI	GCNGC	7 cut(s)	301, 789, 948, 1017, 1075, 1782, 1884
Bme1390I	CCNGG	2 cut(s)	167, 1796
Bme18I	GGWCC	3 cut(s)	29, 1265, 1792
BmeRI	GACNNNNNGTC	1 cut(s)	286
BmgT120I	GGNCC	3 cut(s)	29, 1265, 1792
BmiI	GGNNCC	3 cut(s)	339, 569, 1033
BmrFI	CCNGG	2 cut(s)	167, 1796
BmrI	ACTGGG	1 cut(s)	135
BmsI	GCATC	3 cut(s)	204, 1468, 1869
BmtI	GCTAGC	1 cut(s)	1169
BmuI	ACTGGG	1 cut(s)	135
BplI	GAGNNNNNCTC	4 cut(s)	970, 1002, 1569, 1601
Bpu14I	TTCGAA	1 cut(s)	501
BpuEI	CTTGAG	3 cut(s)	203, 666, 917
BpuMI	CCSGG	2 cut(s)	167, 1796
BsaBI	GATNNNNATC	1 cut(s)	723
BsaHI	GRCGYC	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	1280
BsaJI	CCNNGG	4 cut(s)	174, 894, 961, 1672
BsaWI	WCCGGW	2 cut(s)	1289, 1428
BsaXI	ACNNNNNCTCC	2 cut(s)	722, 752
Bsc4I	CCNNNNNNNGG	1 cut(s)	632
Bse118I	RCCGGY	1 cut(s)	1428
Bse1I	ACTGG	4 cut(s)	141, 258, 1027, 1794
Bse3DI	GCAATG	3 cut(s)	751, 1347, 1543
Bse8I	GATNNNNATC	1 cut(s)	723
BseDI	CCNNGG	4 cut(s)	174, 894, 961, 1672
BseGI	GGATG	5 cut(s)	136, 250, 1656, 1884, 1895
BseJI	GATNNNNATC	1 cut(s)	723
BseLI	CCNNNNNNNGG	1 cut(s)	632
BseMI	GCAATG	3 cut(s)	751, 1347, 1543
BseMII	CTCAG	4 cut(s)	405, 666, 989, 1722
BseNI	ACTGG	4 cut(s)	141, 258, 1027, 1794
BseRI	GAGGAG	5 cut(s)	333, 575, 738, 943, 1652
BseSI	GKGCMC	1 cut(s)	889
BseXI	GCAGC	5 cut(s)	286, 799, 1060, 1792, 1869
BseYI	CCCAGC	2 cut(s)	509, 1769
Bsh1236I	CGCG	1 cut(s)	1015
BshFI	GGCC	4 cut(s)	54, 1005, 1228, 1729
BshNI	GGYRCC	1 cut(s)	567
BshTI	ACCGGT	1 cut(s)	1428
BsiHKAI	GWGCWC	2 cut(s)	390, 889
BsiSI	CCGG	4 cut(s)	167, 1290, 1429, 1795
BsiWI	CGTACG	1 cut(s)	1092
BslFI	GGGAC	1 cut(s)	1555
BslI	CCNNNNNNNGG	1 cut(s)	632
BsmAI	GTCTC	5 cut(s)	294, 1280, 1445, 1674, 1727
BsmBI	CGTCTC	1 cut(s)	1445
BsmFI	GGGAC	1 cut(s)	1555
BsnI	GGCC	4 cut(s)	54, 1005, 1228, 1729
Bso31I	GGTCTC	1 cut(s)	1280
Bsp119I	TTCGAA	1 cut(s)	501
Bsp1286I	GDGCHC	3 cut(s)	167, 390, 889
Bsp143I	GATC	7 cut(s)	337, 718, 809, 1381, 1494, 1752, 1902
Bsp19I	CCATGG	2 cut(s)	961, 1672
BspACI	CCGC	2 cut(s)	946, 1015
BspANI	GGCC	4 cut(s)	54, 1005, 1228, 1729
BspCNI	CTCAG	4 cut(s)	404, 667, 988, 1723
BspFNI	CGCG	1 cut(s)	1015
BspHI	TCATGA	1 cut(s)	1158
BspLI	GGNNCC	3 cut(s)	339, 569, 1033
BspOI	GCTAGC	1 cut(s)	1169
BspPI	GGATC	5 cut(s)	332, 345, 817, 1389, 1910
BspT104I	TTCGAA	1 cut(s)	501
BspT107I	GGYRCC	1 cut(s)	567
BspTNI	GGTCTC	1 cut(s)	1280
BsrDI	GCAATG	3 cut(s)	751, 1347, 1543
BsrFI	RCCGGY	1 cut(s)	1428
BsrI	ACTGG	4 cut(s)	141, 258, 1027, 1794
BssAI	RCCGGY	1 cut(s)	1428
BssECI	CCNNGG	4 cut(s)	174, 894, 961, 1672
BssMI	GATC	7 cut(s)	337, 718, 809, 1381, 1494, 1752, 1902
BssNI	GRCGYC	1 cut(s)	321
BssSI	CACGAG	1 cut(s)	1632
BssT1I	CCWWGG	2 cut(s)	961, 1672
Bst2BI	CACGAG	1 cut(s)	1632
Bst4CI	ACNGT	4 cut(s)	284, 651, 1456, 1572
Bst6I	CTCTTC	1 cut(s)	1278
BstACI	GRCGYC	1 cut(s)	321
BstAPI	GCANNNNNTGC	1 cut(s)	1879
BstBI	TTCGAA	1 cut(s)	501
BstC8I	GCNNGC	3 cut(s)	901, 1167, 1702
BstDEI	CTNAG	4 cut(s)	391, 675, 975, 1731
BstDSI	CCRYGG	3 cut(s)	894, 961, 1672
BstF5I	GGATG	5 cut(s)	136, 250, 1656, 1884, 1895
BstFNI	CGCG	1 cut(s)	1015
BstHHI	GCGC	1 cut(s)	1015
BstKTI	GATC	7 cut(s)	340, 721, 812, 1384, 1497, 1755, 1905
BstMAI	GTCTC	5 cut(s)	294, 1280, 1445, 1674, 1727
BstMBI	GATC	7 cut(s)	337, 718, 809, 1381, 1494, 1752, 1902
BstMWI	GCNNNNNNNGC	4 cut(s)	515, 787, 796, 1879
BstNSI	RCATGY	3 cut(s)	274, 971, 1704
BstSCI	CCNGG	2 cut(s)	165, 1794
BstSLI	GKGCMC	1 cut(s)	889
BstUI	CGCG	1 cut(s)	1015
BstV1I	GCAGC	5 cut(s)	286, 799, 1060, 1792, 1869
BstX2I	RGATCY	3 cut(s)	337, 809, 1381
BstXI	CCANNNNNNTGG	1 cut(s)	578
BstYI	RGATCY	3 cut(s)	337, 809, 1381
BsuRI	GGCC	4 cut(s)	54, 1005, 1228, 1729
BtgI	CCRYGG	3 cut(s)	894, 961, 1672
BtgZI	GCGATG	1 cut(s)	1280
BtsCI	GGATG	5 cut(s)	136, 250, 1656, 1884, 1895
BtsI	GCAGTG	2 cut(s)	1608, 1908
BtsIMutI	CAGTG	5 cut(s)	148, 1330, 1608, 1787, 1908
Cac8I	GCNNGC	3 cut(s)	901, 1167, 1702
CaiI	CAGNNNCTG	1 cut(s)	1076
CciI	TCATGA	1 cut(s)	1158
CfoI	GCGC	1 cut(s)	1015
Cfr10I	RCCGGY	1 cut(s)	1428
Cfr13I	GGNCC	3 cut(s)	29, 1265, 1792
Csp6I	GTAC	6 cut(s)	223, 373, 568, 744, 1093, 1339
CspAI	ACCGGT	1 cut(s)	1428
CviQI	GTAC	6 cut(s)	223, 373, 568, 744, 1093, 1339
DdeI	CTNAG	4 cut(s)	391, 675, 975, 1731
DpnI	GATC	7 cut(s)	339, 720, 811, 1383, 1496, 1754, 1904
DpnII	GATC	7 cut(s)	337, 718, 809, 1381, 1494, 1752, 1902
DriI	GACNNNNNGTC	1 cut(s)	286
EaeI	YGGCCR	1 cut(s)	52
Eam1104I	CTCTTC	1 cut(s)	1278
Eam1105I	GACNNNNNGTC	1 cut(s)	286
EarI	CTCTTC	1 cut(s)	1278
Eco130I	CCWWGG	2 cut(s)	961, 1672
Eco147I	AGGCCT	1 cut(s)	1729
Eco24I	GRGCYC	1 cut(s)	167
Eco31I	GGTCTC	1 cut(s)	1280
Eco32I	GATATC	1 cut(s)	1131
Eco47I	GGWCC	3 cut(s)	29, 1265, 1792
Eco57I	CTGAAG	2 cut(s)	51, 1508
EcoRV	GATATC	1 cut(s)	1131
EcoT14I	CCWWGG	2 cut(s)	961, 1672
EcoT38I	GRGCYC	1 cut(s)	167
ErhI	CCWWGG	2 cut(s)	961, 1672
Esp3I	CGTCTC	1 cut(s)	1445
FaqI	GGGAC	1 cut(s)	1555
FauNDI	CATATG	1 cut(s)	411
FbaI	TGATCA	2 cut(s)	718, 1494
Fnu4HI	GCNGC	7 cut(s)	300, 788, 947, 1016, 1074, 1781, 1883
FokI	GGATG	5 cut(s)	123, 257, 1663, 1891, 1902
FriOI	GRGCYC	1 cut(s)	167
Fsp4HI	GCNGC	7 cut(s)	300, 788, 947, 1016, 1074, 1781, 1883
FspBI	CTAG	4 cut(s)	1007, 1166, 1301, 1936
GlaI	GCGC	1 cut(s)	1014
GluI	GCNGC	7 cut(s)	300, 788, 947, 1016, 1074, 1781, 1883
GsaI	CCCAGC	2 cut(s)	513, 1773
HaeIII	GGCC	4 cut(s)	54, 1005, 1228, 1729
HapII	CCGG	4 cut(s)	167, 1290, 1429, 1795
HhaI	GCGC	1 cut(s)	1015
Hin1I	GRCGYC	1 cut(s)	321
Hin6I	GCGC	1 cut(s)	1013
HinP1I	GCGC	1 cut(s)	1013
HpaII	CCGG	4 cut(s)	167, 1290, 1429, 1795
HphI	GGTGA	2 cut(s)	728, 1038
Hpy166II	GTNNAC	3 cut(s)	373, 887, 926
Hpy8I	GTNNAC	3 cut(s)	373, 887, 926
Hpy99I	CGWCG	2 cut(s)	323, 1650
HpyAV	CCTTC	6 cut(s)	251, 328, 626, 845, 1567, 1893
HpyCH4III	ACNGT	4 cut(s)	284, 651, 1456, 1572
HpyCH4IV	ACGT	2 cut(s)	155, 321
HpyF10VI	GCNNNNNNNGC	4 cut(s)	515, 787, 796, 1879
HpyF3I	CTNAG	4 cut(s)	391, 675, 975, 1731
HpySE526I	ACGT	2 cut(s)	155, 321
Hsp92I	GRCGYC	1 cut(s)	321
HspAI	GCGC	1 cut(s)	1013
KpnI	GGTACC	1 cut(s)	571
Ksp22I	TGATCA	2 cut(s)	718, 1494
Kzo9I	GATC	7 cut(s)	337, 718, 809, 1381, 1494, 1752, 1902
LmnI	GCTCC	3 cut(s)	773, 1402, 1828
Lsp1109I	GCAGC	5 cut(s)	286, 799, 1060, 1792, 1869
LweI	GCATC	3 cut(s)	204, 1468, 1869
MaeI	CTAG	4 cut(s)	1007, 1166, 1301, 1936
MaeII	ACGT	2 cut(s)	155, 321
MaeIII	GTNAC	2 cut(s)	70, 702
MalI	GATC	7 cut(s)	339, 720, 811, 1383, 1496, 1754, 1904
MboI	GATC	7 cut(s)	337, 718, 809, 1381, 1494, 1752, 1902
MflI	RGATCY	3 cut(s)	337, 809, 1381
MhlI	GDGCHC	3 cut(s)	167, 390, 889
MlsI	TGGCCA	1 cut(s)	54
MluCI	AATT	8 cut(s)	47, 196, 496, 541, 619, 1136, 1417, 1820
MluNI	TGGCCA	1 cut(s)	54
MlyI	GAGTC	2 cut(s)	665, 746
MmeI	TCCRAC	5 cut(s)	1009, 1264, 1628, 1638, 1806
Mox20I	TGGCCA	1 cut(s)	54
MroXI	GAANNNNTTC	2 cut(s)	1368, 1667
MscI	TGGCCA	1 cut(s)	54
MseI	TTAA	5 cut(s)	327, 555, 1386, 1416, 1433
MslI	CAYNNNNRTG	6 cut(s)	141, 393, 410, 966, 1443, 1596
Msp20I	TGGCCA	1 cut(s)	54
MspA1I	CMGCKG	1 cut(s)	1073
MspI	CCGG	4 cut(s)	167, 1290, 1429, 1795
MspR9I	CCNGG	2 cut(s)	167, 1796
MvnI	CGCG	1 cut(s)	1015
MwoI	GCNNNNNNNGC	4 cut(s)	515, 787, 796, 1879
NciI	CCSGG	2 cut(s)	167, 1796
NcoI	CCATGG	2 cut(s)	961, 1672
NdeI	CATATG	1 cut(s)	411
NdeII	GATC	7 cut(s)	337, 718, 809, 1381, 1494, 1752, 1902
NheI	GCTAGC	1 cut(s)	1165
NlaIV	GGNNCC	3 cut(s)	339, 569, 1033
NmuCI	GTSAC	1 cut(s)	70
NspI	RCATGY	3 cut(s)	274, 971, 1704
NspV	TTCGAA	1 cut(s)	501
PaeI	GCATGC	1 cut(s)	1704
PagI	TCATGA	1 cut(s)	1158
PceI	AGGCCT	1 cut(s)	1729
PcsI	WCGNNNNNNNCGW	1 cut(s)	829
PdmI	GAANNNNTTC	2 cut(s)	1368, 1667
PfeI	GAWTC	8 cut(s)	42, 116, 146, 170, 401, 467, 598, 1642
Pfl23II	CGTACG	1 cut(s)	1092
PinAI	ACCGGT	1 cut(s)	1428
PkrI	GCNGC	7 cut(s)	301, 789, 948, 1017, 1075, 1782, 1884
PleI	GAGTC	2 cut(s)	665, 745
PpsI	GAGTC	2 cut(s)	665, 745
PshBI	ATTAAT	1 cut(s)	555
PspFI	CCCAGC	2 cut(s)	509, 1769
PspLI	CGTACG	1 cut(s)	1092
PspN4I	GGNNCC	3 cut(s)	339, 569, 1033
PspPI	GGNCC	3 cut(s)	29, 1265, 1792
PstNI	CAGNNNCTG	1 cut(s)	1076
PsuI	RGATCY	3 cut(s)	337, 809, 1381
PvuII	CAGCTG	1 cut(s)	1073
RsaI	GTAC	6 cut(s)	224, 374, 569, 745, 1094, 1340
RsaNI	GTAC	6 cut(s)	223, 373, 568, 744, 1093, 1339
RseI	CAYNNNNRTG	6 cut(s)	141, 393, 410, 966, 1443, 1596
SaqAI	TTAA	5 cut(s)	327, 555, 1386, 1416, 1433
SatI	GCNGC	7 cut(s)	300, 788, 947, 1016, 1074, 1781, 1883
Sau3AI	GATC	7 cut(s)	337, 718, 809, 1381, 1494, 1752, 1902
Sau96I	GGNCC	3 cut(s)	29, 1265, 1792
SchI	GAGTC	2 cut(s)	665, 746
ScrFI	CCNGG	2 cut(s)	167, 1796
SduI	GDGCHC	3 cut(s)	167, 390, 889
SfaNI	GCATC	3 cut(s)	204, 1468, 1869
SfuI	TTCGAA	1 cut(s)	501
SinI	GGWCC	3 cut(s)	29, 1265, 1792
SmiMI	CAYNNNNRTG	6 cut(s)	141, 393, 410, 966, 1443, 1596
SmlI	CTYRAG	3 cut(s)	218, 681, 932
SmoI	CTYRAG	3 cut(s)	218, 681, 932
SphI	GCATGC	1 cut(s)	1704
Sse9I	AATT	8 cut(s)	47, 196, 496, 541, 619, 1136, 1417, 1820
SseBI	AGGCCT	1 cut(s)	1729
SsiI	CCGC	2 cut(s)	946, 1015
SspMI	CTAG	4 cut(s)	1007, 1166, 1301, 1936
StuI	AGGCCT	1 cut(s)	1729
StyD4I	CCNGG	2 cut(s)	165, 1794
StyI	CCWWGG	2 cut(s)	961, 1672
TaaI	ACNGT	4 cut(s)	284, 651, 1456, 1572
TaiI	ACGT	2 cut(s)	158, 324
TaqI	TCGA	1 cut(s)	501
TasI	AATT	8 cut(s)	47, 196, 496, 541, 619, 1136, 1417, 1820
TatI	WGTACW	3 cut(s)	222, 743, 1338
TauI	GCSGC	2 cut(s)	949, 1018
TfiI	GAWTC	8 cut(s)	42, 116, 146, 170, 401, 467, 598, 1642
Tru1I	TTAA	5 cut(s)	327, 555, 1386, 1416, 1433
Tru9I	TTAA	5 cut(s)	327, 555, 1386, 1416, 1433
TscAI	CASTG	5 cut(s)	148, 1330, 1608, 1794, 1915
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	5 cut(s)	299, 787, 1073, 1780, 1882
Tsp45I	GTSAC	1 cut(s)	70
TspGWI	ACGGA	2 cut(s)	50, 1278
TspRI	CASTG	5 cut(s)	148, 1330, 1608, 1794, 1915
VneI	GTGCAC	1 cut(s)	885
VpaK11BI	GGWCC	3 cut(s)	29, 1265, 1792
VspI	ATTAAT	1 cut(s)	555
XapI	RAATTY	3 cut(s)	47, 496, 541
XceI	RCATGY	3 cut(s)	274, 971, 1704
XmnI	GAANNNNTTC	2 cut(s)	1368, 1667
XspI	CTAG	4 cut(s)	1007, 1166, 1301, 1936
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.